Virome assembly reveals draft genomes of native Pseudomonas phages isolated from a paediatric bronchoalveolar lavage sample

COMBAT study group

doi:10.1128/mra.01030-24

Virome assembly reveals draft genomes of native Pseudomonas phages isolated from a paediatric bronchoalveolar lavage sample

COMBAT study group

Research output: Contribution to journal › Article › peer-review

Abstract

We present lung virome data recovered through shotgun metagenomics in bronchoalveolar lavage fluid from an infant with cystic fibrosis, who tested positive for Stenotrophomonas maltophilia infection. Using a bioinformatic pipeline for virus characterization in shotgun metagenomic data, we identified five viral contigs representing Pseudomonas phages classified as Caudoviricetes.

Original language	English
Pages (from-to)	1-5
Number of pages	5
Journal	Microbiology Resource Announcements
Volume	14
Issue number	2
Early online date	20 Dec 2024
DOIs	https://doi.org/10.1128/mra.01030-24
Publication status	Published - Feb 2025

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10.1128/mra.01030-24Licence: CC BY

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@article{300d7a4a38cf42baab5ba3bb4e96ddeb,

title = "Virome assembly reveals draft genomes of native Pseudomonas phages isolated from a paediatric bronchoalveolar lavage sample",

abstract = "We present lung virome data recovered through shotgun metagenomics in bronchoalveolar lavage fluid from an infant with cystic fibrosis, who tested positive for Stenotrophomonas maltophilia infection. Using a bioinformatic pipeline for virus characterization in shotgun metagenomic data, we identified five viral contigs representing Pseudomonas phages classified as Caudoviricetes.",

keywords = "bronchoalveolar lavage, cystic fibrosis, metagenomics, viruses",

author = "{COMBAT study group} and Patricia Agudelo-Romero and Caparros-Martin, {Jose A.} and Abhinav Sharma and Montserrat Saladi{\'e} and Sly, {Peter D.} and Stick, {Stephen M.} and Fergal O'Gara",

note = "Publisher Copyright: Copyright {\textcopyright} 2024 Agudelo-Romero et al.",

year = "2025",

month = feb,

doi = "10.1128/mra.01030-24",

language = "English",

volume = "14",

pages = "1--5",

journal = "Microbiology Resource Announcements",

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publisher = "American Society for Microbiology",

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T1 - Virome assembly reveals draft genomes of native Pseudomonas phages isolated from a paediatric bronchoalveolar lavage sample

AU - COMBAT study group

AU - Agudelo-Romero, Patricia

AU - Caparros-Martin, Jose A.

AU - Sharma, Abhinav

AU - Saladié, Montserrat

AU - Sly, Peter D.

AU - Stick, Stephen M.

AU - O'Gara, Fergal

PY - 2025/2

Y1 - 2025/2

N2 - We present lung virome data recovered through shotgun metagenomics in bronchoalveolar lavage fluid from an infant with cystic fibrosis, who tested positive for Stenotrophomonas maltophilia infection. Using a bioinformatic pipeline for virus characterization in shotgun metagenomic data, we identified five viral contigs representing Pseudomonas phages classified as Caudoviricetes.

AB - We present lung virome data recovered through shotgun metagenomics in bronchoalveolar lavage fluid from an infant with cystic fibrosis, who tested positive for Stenotrophomonas maltophilia infection. Using a bioinformatic pipeline for virus characterization in shotgun metagenomic data, we identified five viral contigs representing Pseudomonas phages classified as Caudoviricetes.

KW - bronchoalveolar lavage

KW - cystic fibrosis

KW - metagenomics

KW - viruses

UR - http://www.scopus.com/inward/record.url?scp=85217809437&partnerID=8YFLogxK

U2 - 10.1128/mra.01030-24

DO - 10.1128/mra.01030-24

M3 - Article

C2 - 39704517

AN - SCOPUS:85217809437

SN - 2576-098X

VL - 14

SP - 1

EP - 5

JO - Microbiology Resource Announcements

JF - Microbiology Resource Announcements

IS - 2

ER -

Virome assembly reveals draft genomes of native Pseudomonas phages isolated from a paediatric bronchoalveolar lavage sample

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