TY - JOUR
T1 - Universal prediction of vertebrate species age at maturity
AU - Budd, Alyssa M.
AU - Yong, Suk Yee
AU - Heydenrych, Matthew J.
AU - Mayne, Benjamin
AU - Berry, Oliver
AU - Jarman, Simon
PY - 2024/10/30
Y1 - 2024/10/30
N2 - Animal age at maturity can be used as a universal and simple predictor of species extinction risk. At present, methods to estimate age at maturity are typically species-specific, limiting comparisons among species, or are infeasible due to practical constraints. To overcome this, here we develop a universal predictor of species-level age at maturity for vertebrates. We show that modelling the frequency of 'CG' sequences (CpG sites) in gene promoter regions yields rapid predictions of vertebrate age at maturity. Our models predict age at maturity with remarkable accuracy and generalisability, with median error rates of 30% (less than 1 year) and are robust to genome assemblies of varying quality. We generate predictions for 1912 vertebrate species for which age at maturity estimates were previously absent from public databases. The predictions can be used to help to inform management decisions for the many species for which more detailed population information is currently unavailable.
AB - Animal age at maturity can be used as a universal and simple predictor of species extinction risk. At present, methods to estimate age at maturity are typically species-specific, limiting comparisons among species, or are infeasible due to practical constraints. To overcome this, here we develop a universal predictor of species-level age at maturity for vertebrates. We show that modelling the frequency of 'CG' sequences (CpG sites) in gene promoter regions yields rapid predictions of vertebrate age at maturity. Our models predict age at maturity with remarkable accuracy and generalisability, with median error rates of 30% (less than 1 year) and are robust to genome assemblies of varying quality. We generate predictions for 1912 vertebrate species for which age at maturity estimates were previously absent from public databases. The predictions can be used to help to inform management decisions for the many species for which more detailed population information is currently unavailable.
UR - http://www.scopus.com/inward/record.url?scp=85208162387&partnerID=8YFLogxK
U2 - 10.1038/s42003-024-07046-z
DO - 10.1038/s42003-024-07046-z
M3 - Article
C2 - 39478142
AN - SCOPUS:85208162387
SN - 2399-3642
VL - 7
SP - 1414
JO - Communications Biology
JF - Communications Biology
IS - 1
M1 - 1414
ER -