The molecular basis for spectral tuning of rod visual pigments in deep-sea fish

David M. Hunt, Kanwaljit S. Dulai, Julian C. Partridge, Phillippa Cottrill, James K. Bowmaker

Research output: Contribution to journalArticlepeer-review

125 Citations (Scopus)


Most species of deep-sea fish possess of a rod-only retina with a pigment that is generally shortwave shifted in λmax towards the blue region of the spectrum. In addition, the λmax values of different species tend to cluster at particular points in the spectrum. In this study, the rod opsin gene sequences from 28 deep-sea fish species drawn from seven different Orders are compared. The λmax values of the rod pigments vary from approximately 520nm to <470nm, with the majority lying between 490 nm and 477 nm. The 520 nm pigment in two species of dragon fish is associated with a Phe261Tyr substitution, whereas the shortwave shifts of the pigments in the other 26 species are accountable by substitutions at a further eight sites (83, 122, 124, 132, 208, 292, 299 and 300). Clustering of λmax values does not, however, involve a common subset of these substitutions in the different species. A phylogenetic analysis predicts that the pigment in the ancestral species would have had a λmax of approximately 480 nm. A total of 27 changes is required to generate the pattern of substitutions seen in the different species, with many sites undergoing multiple changes.

Original languageEnglish
Pages (from-to)3333-3344
Number of pages12
JournalJournal of Experimental Biology
Issue number19
Publication statusPublished - 1 Dec 2001
Externally publishedYes


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