The FANTOM web resource: From mammalian transcriptional landscape to its dynamic regulation

Hideya Kawaji, Jessica Severin, Marina Lizio, Andrew Waterhouse, Shintaro Katayama, Katharine M. Irvine, David A. Hume, Alistair R.R. Forrest, Harukazu Suzuki, Piero Carninci, Yoshihide Hayashizaki, Carsten O. Daub

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57 Citations (Scopus)

Abstract

In FANTOM4, an international collaborative research project, we collected a wide range of genome-scale data, including 24 million mRNA 5′-reads (CAGE tags) and microarray expression profiles along a differentiation time course of the human THP-1 cell line and under 52 systematic siRNA perturbations. In addition, data regarding chromatin status derived from ChIP-chip to elucidate the transcriptional regulatory interactions are included. Here we present these data to the research community as an integrated web resource.

Original languageEnglish
Article numberR40
JournalGenome Biology
Volume10
Issue number4
DOIs
Publication statusPublished - 19 Apr 2009
Externally publishedYes

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    Kawaji, H., Severin, J., Lizio, M., Waterhouse, A., Katayama, S., Irvine, K. M., Hume, D. A., Forrest, A. R. R., Suzuki, H., Carninci, P., Hayashizaki, Y., & Daub, C. O. (2009). The FANTOM web resource: From mammalian transcriptional landscape to its dynamic regulation. Genome Biology, 10(4), [R40]. https://doi.org/10.1186/gb-2009-10-4-r40