Single-cell genomic analysis in plants

Yuxuan Yuan, Huey Tyng Lee, Haifei Hu, Armin Scheben, David Edwards

Research output: Contribution to journalReview article

11 Citations (Scopus)

Abstract

Individual cells in an organism are variable, which strongly impacts cellular processes. Advances in sequencing technologies have enabled single-cell genomic analysis to become widespread, addressing shortcomings of analyses conducted on populations of bulk cells. While the field of single-cell plant genomics is in its infancy, there is great potential to gain insights into cell lineage and functional cell types to help understand complex cellular interactions in plants. In this review, we discuss current approaches for single-cell plant genomic analysis, with a focus on single-cell isolation, DNA amplification, next-generation sequencing, and bioinformatics analysis. We outline the technical challenges of analysing material from a single plant cell, and then examine applications of single-cell genomics and the integration of this approach with genome editing. Finally, we indicate future directions we expect in the rapidly developing field of plant single-cell genomic analysis.

Original languageEnglish
Article number50
JournalGenes
Volume9
Issue number1
DOIs
Publication statusPublished - 22 Jan 2018

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    Yuan, Y., Lee, H. T., Hu, H., Scheben, A., & Edwards, D. (2018). Single-cell genomic analysis in plants. Genes, 9(1), [50]. https://doi.org/10.3390/genes9010050