Searching for Homologous Genes Using Daisychain

Research output: Chapter in Book/Conference paperChapterpeer-review

1 Citation (Scopus)

Abstract

Genome assemblies have become a standard tool of genomics research and are relatively inexpensive to produce due to falling sequencing costs. For many species, there are now several reference-grade genome assemblies. However, comparing different assemblies or the same or related individuals is not an easy task, especially with different levels of quality of assembly and annotation. Tools are needed to visualise related genes with different IDs across genome assemblies. Here, we present a workflow to search and visualise related genes using Daisychain, a web-based tool aimed at researchers who wish to compare genes between assemblies.

Original languageEnglish
Title of host publicationPlant Comparative Genomics
EditorsAlejandro Pereira-Santana, Samuel David Gamboa-Tuz, Luis Carlos Rodriguez-Zapata
Place of PublicationUSA
PublisherHumana Press Inc.
Chapter7
Pages95-101
ISBN (Electronic)978-1-0716-2429-6
ISBN (Print)978-1-0716-2428-9
DOIs
Publication statusPublished - 2022

Publication series

NameMethods in molecular biology (Clifton, N.J.)
PublisherHumana Press
Volume2512
ISSN (Print)1064-3745

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