Schex avoids overplotting for large single cell RNA-sequencing datasets

Research output: Contribution to journalArticle

Abstract

SUMMARY: Due to the scale and sparsity of single cell RNA-sequencing data, traditional plots can obscure vital information. Our R package schex overcomes this by implementing hexagonal binning, which has the additional advantages of improving speed and reducing storage for resulting plots.

AVAILABILITY: schex is freely available from Bioconductor via http://bioconductor.org/packages/release/bioc/html/schex.html and its development version can be accessed on GitHub via https://github.com/SaskiaFreytag/schex.

Original languageEnglish
JournalBioinformatics (Oxford, England)
DOIs
Publication statusE-pub ahead of print - 3 Dec 2019

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