runBNG: a software package for BioNano genomic analysis on the command line

Yuxuan Yuan, Philipp E. Bayer, Huey-Tyng Lee, David Edwards

Research output: Contribution to journalArticle

3 Citations (Scopus)

Abstract

We developed runBNG, an open-source software package which wraps BioNano genomic analysis tools into a single script that can be run on the command line. runBNG can complete analyses, including quality control of single molecule maps, optical map de novo assembly, comparisons between different optical maps, super-scaffolding and structural variation detection. Compared to existing software BioNano IrysView and the KSU scripts, the major advantages of runBNG are that the whole pipeline runs on one single platform and it has a high customizability.

Original languageEnglish
Pages (from-to)3107-3109
Number of pages3
JournalBioinformatics
Volume33
Issue number19
DOIs
Publication statusPublished - 1 Oct 2017

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