PrepMS: TOF MS data graphical preprocessing tool

Yuliya V. Karpievitch; Elizabeth G. Hill; Adam J. Smolka; Jeffrey S. Morris; Kevin R. Coombes; Keith A. Baggerly; Jonas S. Almeida

doi:10.1093/bioinformatics/btl583

PrepMS: TOF MS data graphical preprocessing tool

Yuliya V. Karpievitch, Elizabeth G. Hill, Adam J. Smolka, Jeffrey S. Morris, Kevin R. Coombes, Keith A. Baggerly, Jonas S. Almeida

Research output: Contribution to journal › Article › peer-review

36 Citations (Scopus)

Abstract

Summary: We introduce a simple-to-use graphical tool that enables researchers to easily prepare time-of-flight mass spectrometry data for analysis. For ease of use, the graphical executable provides default parameter settings, experimentally determined to work well in most situations. These values, if desired, can be changed by the user. PrepMS is a stand-alone application made freely available (open source), and is under the General Public License (GPL). Its graphical user interface, default parameter settings, and display plots allow PrepMS to be used effectively for data preprocessing, peak detection and visual data quality assessment.

Original language	English
Pages (from-to)	264-265
Number of pages	2
Journal	Bioinformatics
Volume	23
Issue number	2
DOIs	https://doi.org/10.1093/bioinformatics/btl583
Publication status	Published - 6 Feb 2007
Externally published	Yes

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title = "PrepMS: TOF MS data graphical preprocessing tool",

abstract = "Summary: We introduce a simple-to-use graphical tool that enables researchers to easily prepare time-of-flight mass spectrometry data for analysis. For ease of use, the graphical executable provides default parameter settings, experimentally determined to work well in most situations. These values, if desired, can be changed by the user. PrepMS is a stand-alone application made freely available (open source), and is under the General Public License (GPL). Its graphical user interface, default parameter settings, and display plots allow PrepMS to be used effectively for data preprocessing, peak detection and visual data quality assessment.",

author = "Karpievitch, {Yuliya V.} and Hill, {Elizabeth G.} and Smolka, {Adam J.} and Morris, {Jeffrey S.} and Coombes, {Kevin R.} and Baggerly, {Keith A.} and Almeida, {Jonas S.}",

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doi = "10.1093/bioinformatics/btl583",

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AU - Karpievitch, Yuliya V.

AU - Hill, Elizabeth G.

AU - Smolka, Adam J.

AU - Morris, Jeffrey S.

AU - Coombes, Kevin R.

AU - Baggerly, Keith A.

AU - Almeida, Jonas S.

PY - 2007/2/6

Y1 - 2007/2/6

N2 - Summary: We introduce a simple-to-use graphical tool that enables researchers to easily prepare time-of-flight mass spectrometry data for analysis. For ease of use, the graphical executable provides default parameter settings, experimentally determined to work well in most situations. These values, if desired, can be changed by the user. PrepMS is a stand-alone application made freely available (open source), and is under the General Public License (GPL). Its graphical user interface, default parameter settings, and display plots allow PrepMS to be used effectively for data preprocessing, peak detection and visual data quality assessment.

AB - Summary: We introduce a simple-to-use graphical tool that enables researchers to easily prepare time-of-flight mass spectrometry data for analysis. For ease of use, the graphical executable provides default parameter settings, experimentally determined to work well in most situations. These values, if desired, can be changed by the user. PrepMS is a stand-alone application made freely available (open source), and is under the General Public License (GPL). Its graphical user interface, default parameter settings, and display plots allow PrepMS to be used effectively for data preprocessing, peak detection and visual data quality assessment.

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DO - 10.1093/bioinformatics/btl583

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SN - 1367-4803

VL - 23

SP - 264

EP - 265

JO - Bioinformatics

JF - Bioinformatics

IS - 2

ER -

PrepMS: TOF MS data graphical preprocessing tool

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