TY - CHAP
T1 - Method for Genome-Wide Association Study
T2 - A Soybean Example
AU - Anderson, Robyn
AU - Fernandez, Cassandria Tay
AU - Yuan, Yuxuan
AU - Golicz, Agnieszka A
AU - Edwards, David
AU - Bayer, Philipp E
PY - 2020
Y1 - 2020
N2 - Genome-wide association studies (GWAS) are a valuable approach to identify single nucleotide polymorphisms (SNPs) associated with a phenotype of interest. There are now a variety of R-packages and command line tools available to perform GWAS. Here, we provide an example downloading and filtering SNP data, followed by GWAS analysis using the R-package rMVP.
AB - Genome-wide association studies (GWAS) are a valuable approach to identify single nucleotide polymorphisms (SNPs) associated with a phenotype of interest. There are now a variety of R-packages and command line tools available to perform GWAS. Here, we provide an example downloading and filtering SNP data, followed by GWAS analysis using the R-package rMVP.
UR - https://www.scopus.com/pages/publications/85077467294
U2 - 10.1007/978-1-0716-0235-5_7
DO - 10.1007/978-1-0716-0235-5_7
M3 - Chapter
C2 - 31893446
SN - 9781071602348
VL - 2107
T3 - Methods in Molecular Biology
SP - 147
EP - 158
BT - Methods in Molecular Biology
CY - Humana, New York, NY
ER -