Method for Genome-Wide Association Study: A Soybean Example

Robyn Anderson, Cassandria Tay Fernandez, Yuxuan Yuan, Agnieszka A Golicz, David Edwards, Philipp E Bayer

Research output: Chapter in Book/Conference paperChapterpeer-review

2 Citations (Scopus)


Genome-wide association studies (GWAS) are a valuable approach to identify single nucleotide polymorphisms (SNPs) associated with a phenotype of interest. There are now a variety of R-packages and command line tools available to perform GWAS. Here, we provide an example downloading and filtering SNP data, followed by GWAS analysis using the R-package rMVP.

Original languageEnglish
Title of host publicationMethods in Molecular Biology
Place of PublicationHumana, New York, NY
Number of pages12
ISBN (Electronic)9781071602355
Publication statusPublished - 2020

Publication series

NameMethods in Molecular Biology
ISSN (Print)1064-3745
ISSN (Electronic)1940-6029


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