Abstract
A pangenome is a collection of genomic sequences found in the entire species rather than a single individual. It allows for comprehensive, species-wide characterization of genetic variations and mining of variable genes which may play important roles in phenotypes of interest. Recent advances in sequencing technologies have facilitated draft genome sequence construction and have made pangenome constructions feasible. Here, we present a reference genome-based iterative mapping and assembly method to construct a pangenome for a legume species.
| Original language | English |
|---|---|
| Title of host publication | Legume Genomics |
| Subtitle of host publication | Methods and Protocols |
| Editors | Mukesh Jain, Rohini Garg |
| Place of Publication | New York |
| Publisher | Humana Press |
| Pages | 35-47 |
| Number of pages | 13 |
| Volume | 2107 |
| ISBN (Electronic) | 978-1-0716-0235-5 |
| ISBN (Print) | 978-1-0716-0234-8 |
| DOIs | |
| Publication status | Published - 1 Jan 2020 |
Publication series
| Name | Methods in Molecular Biology |
|---|---|
| Volume | 2107 |
| ISSN (Print) | 1064-3745 |
| ISSN (Electronic) | 1940-6029 |
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Legume pangenome construction using an iterative mapping and assembly approach. / Hu, Haifei; Yuan, Yuxuan; Bayer, Philipp E.; Fernandez, Cassandria T.; Scheben, Armin; Golicz, Agnieszka A.; Edwards, David.
Legume Genomics: Methods and Protocols. ed. / Mukesh Jain; Rohini Garg. Vol. 2107 New York : Humana Press, 2020. p. 35-47 (Methods in Molecular Biology; Vol. 2107).Research output: Chapter in Book/Conference paper › Chapter
TY - CHAP
T1 - Legume pangenome construction using an iterative mapping and assembly approach
AU - Hu, Haifei
AU - Yuan, Yuxuan
AU - Bayer, Philipp E.
AU - Fernandez, Cassandria T.
AU - Scheben, Armin
AU - Golicz, Agnieszka A.
AU - Edwards, David
PY - 2020/1/1
Y1 - 2020/1/1
N2 - A pangenome is a collection of genomic sequences found in the entire species rather than a single individual. It allows for comprehensive, species-wide characterization of genetic variations and mining of variable genes which may play important roles in phenotypes of interest. Recent advances in sequencing technologies have facilitated draft genome sequence construction and have made pangenome constructions feasible. Here, we present a reference genome-based iterative mapping and assembly method to construct a pangenome for a legume species.
AB - A pangenome is a collection of genomic sequences found in the entire species rather than a single individual. It allows for comprehensive, species-wide characterization of genetic variations and mining of variable genes which may play important roles in phenotypes of interest. Recent advances in sequencing technologies have facilitated draft genome sequence construction and have made pangenome constructions feasible. Here, we present a reference genome-based iterative mapping and assembly method to construct a pangenome for a legume species.
KW - Assembly
KW - De novo
KW - Legume
KW - Mapping
KW - Pangenome
UR - http://www.scopus.com/inward/record.url?scp=85077473109&partnerID=8YFLogxK
U2 - 10.1007/978-1-0716-0235-5_3
DO - 10.1007/978-1-0716-0235-5_3
M3 - Chapter
SN - 978-1-0716-0234-8
VL - 2107
T3 - Methods in Molecular Biology
SP - 35
EP - 47
BT - Legume Genomics
A2 - Jain, Mukesh
A2 - Garg, Rohini
PB - Humana Press
CY - New York
ER -