Genome sequencing of disease and carriage isolates of nontypeable Haemophilus influenzae identifies discrete population structure

M. De Chiara, D.W. Hood, A. Muzzi, D.J.J. Pickard, Tim Perkins, M.G. Pizza, G. Dougan, R. Rappuoli, E.R. Moxon, M. Soriani, C. Donati

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    Abstract

    One of the main hurdles for the development of an effective and broadly protective vaccine against nonencapsulated isolates of Haemophilus influenzae (NTHi) lies in the genetic diversity of the species, which renders extremely difficult the identification of cross-protective candidate antigens. To assess whether a population structure of NTHi could be defined, we performed genome sequencing of a collection of diverse clinical isolates representative of both carriage and disease and of the diversity of the natural population. Analysis of the distribution of polymorphic sites in the core genome and of the composition of the accessory genome defined distinct evolutionary clades and supported a predominantly clonal evolution of NTHi, with the majority of genetic information transmitted vertically within lineages. A correlation between the population structure and the presence of selected surface-associated proteins and lipooligosaccharide structure, known to contribute to virulence, was found. This high-resolution, genome-based population structure of NTHi provides the foundation to obtain a better understanding, of NTHi adaptation to the host as well as its commensal and virulence behavior, that could facilitate intervention strategies against disease caused by this important human pathogen.
    Original languageEnglish
    Pages (from-to)5439-5444
    JournalProceedings of the National Academy of Sciences of the United States of America
    Volume111
    Issue number14
    DOIs
    Publication statusPublished - 2014

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    De Chiara, M., Hood, D. W., Muzzi, A., Pickard, D. J. J., Perkins, T., Pizza, M. G., Dougan, G., Rappuoli, R., Moxon, E. R., Soriani, M., & Donati, C. (2014). Genome sequencing of disease and carriage isolates of nontypeable Haemophilus influenzae identifies discrete population structure. Proceedings of the National Academy of Sciences of the United States of America, 111(14), 5439-5444. https://doi.org/10.1073/pnas.1403353111