TY - JOUR
T1 - FANTOM4 EdgeExpressDB
T2 - An integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions
AU - Severin, Jessica
AU - Waterhouse, Andrew M.
AU - Kawaji, Hideya
AU - Lassmann, Timo
AU - Van Nimwegen, Erik
AU - Balwierz, Piotr J.
AU - De Hoon, Michiel J L
AU - Hume, David A.
AU - Carninci, Piero
AU - Hayashizaki, Yoshihide
AU - Suzuki, Harukazu
AU - Daub, Carsten O.
AU - Forrest, Alistair R.R.
PY - 2009/4/19
Y1 - 2009/4/19
N2 - EdgeExpressDB is a novel database and set of interfaces for interpreting biological networks and comparing large high-throughput expression datasets that requires minimal development for new data types and search patterns. The FANTOM4 EdgeExpress database http://fantom.gsc.riken.jp/4/ edgeexpress summarizes gene expression patterns in the context of alternative promoter structures and regulatory transcription factors and microRNAs using intuitive gene-centric and sub-network views. This is an important resource for gene regulation in acute myeloid leukemia, monocyte/macrophage differentiation and human transcriptional networks.
AB - EdgeExpressDB is a novel database and set of interfaces for interpreting biological networks and comparing large high-throughput expression datasets that requires minimal development for new data types and search patterns. The FANTOM4 EdgeExpress database http://fantom.gsc.riken.jp/4/ edgeexpress summarizes gene expression patterns in the context of alternative promoter structures and regulatory transcription factors and microRNAs using intuitive gene-centric and sub-network views. This is an important resource for gene regulation in acute myeloid leukemia, monocyte/macrophage differentiation and human transcriptional networks.
UR - http://www.scopus.com/inward/record.url?scp=65149106589&partnerID=8YFLogxK
U2 - 10.1186/gb-2009-10-4-r39
DO - 10.1186/gb-2009-10-4-r39
M3 - Article
C2 - 19374773
AN - SCOPUS:65149106589
SN - 1474-7596
VL - 10
JO - Genome Biology
JF - Genome Biology
IS - 4
M1 - R39
ER -