Enhanced string covering

T. Flouri, Costas Iliopoulos, T. Kociumaka, S.P. Pissis, S.J. Puglisi, William Smyth, W. Tyczyński

    Research output: Contribution to journalArticle

    20 Citations (Scopus)

    Abstract

    A factor u of a string y is a cover of y if every letter of y lies within some occurrence of u in y; thus every cover u is also a border - both prefix and suffix - of y. If u is a cover of a superstring of y then u is a seed of y. Covers and seeds are two formalisations of quasiperiodicity, and there exist linear-time algorithms for computing all the covers and seeds of y. A string y covered by u thus generalises the idea of a repetition; that is, a string composed of exact concatenations of u. Even though a string is coverable somewhat more frequently than it is a repetition, still a string that can be covered by a single u is rare. As a result, seeking to find a more generally applicable and descriptive notion of cover, many articles were written on the computation of a minimum k-cover of y; that is, the minimum cardinality set of strings of length k that collectively cover y. Unfortunately, this computation turns out to be NP-hard. Therefore, in this article, we propose new, simple, easily-computed, and widely applicable notions of string covering that provide an intuitive and useful characterisation of a string: the enhanced cover; the enhanced left cover; and the enhanced left seed. © 2013 Elsevier B.V.
    Original languageEnglish
    Pages (from-to)102-114
    JournalTheoretical Computer Science
    Volume506
    DOIs
    Publication statusPublished - 2013

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