CompariMotif: Quick and easy comparisons of sequence motifs

Richard J. Edwards, Norman E. Davey, Denis C. Shields

Research output: Contribution to journalArticlepeer-review

44 Citations (Scopus)

Abstract

CompariMotif is a novel tool for making motif-motif comparisons, identifying and describing similarities between regular expression motifs. CompariMotif can identify a number of different relationships between motifs, including exact matches, variants of degenerate motifs and complex overlapping motifs. Motif relationships are scored using shared information content, allowing the best matches to be easily identified in large comparisons. Many input and search options are available, enabling a list of motifs to be compared to itself (to identify recurring motifs) or to datasets of known motifs.

Original languageEnglish
Pages (from-to)1307-1309
Number of pages3
JournalBioinformatics
Volume24
Issue number10
DOIs
Publication statusPublished - May 2008
Externally publishedYes

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