clinker & clustermap.js: automatic generation of gene cluster comparison figures

Cameron L.M. Gilchrist, Yit-heng Chooi

Research output: Contribution to journalArticlepeer-review

82 Citations (Web of Science)

Abstract

Genes involved in biological pathways are often collocalised in gene clusters, the comparison of which can give valuable insights into their function and evolutionary history. However, comparison and visualization of gene cluster similarity is a tedious process, particularly when many clusters are being compared. Here, we present clinker, a Python based tool and clustermap.js, a companion JavaScript visualization library, which used together can automatically generate accurate, interactive, publication-quality gene cluster comparison figures directly from sequence files.
Original languageEnglish
Pages (from-to)2473-2475
Number of pages3
JournalBioinformatics
Volume37
Issue number16
Early online date18 Jan 2021
DOIs
Publication statusPublished - 15 Aug 2021

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