Accessing integrated Brassica genetic and genomic data using the BASC server

Christopher G. Love, David Edwards

Research output: Chapter in Book/Conference paperChapter

2 Citations (Scopus)

Abstract

The BASC system, provides tools for integrated mining and browsing of genetic, genomic and phenotypic data. The BASC demonstration server provides access to raw and analysed information for Brassica species and comparative information with Arabidopsis. We can use the tools within the Brassica BASC server to identify candidate genes for traits, conduct genome comparisons with Arabidopsis, identify syntonic regions and view gene expression profiles. The integration of BASC modules allows researchers to gain a comprehensive view of diverse Brassica genetic, genomic and phenotypic information. This chapter demonstrates the application of this resource, through the identification of candidate genes for an observed seed oil quality trait in Brassica napus.

Original languageEnglish
Title of host publicationPlant Bioinformatics - Methods and Protocols
Pages229-243
Number of pages15
Publication statusPublished - 1 Nov 2007
Externally publishedYes

Publication series

NameMethods in Molecular Biology
Volume406
ISSN (Print)1064-3745

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