A standardised vocabulary for identifying benthic biota and substrata from underwater imagery: The CATAMI classification scheme

F. Althaus, N. Hill, R. Ferrari, L. Edwards, R. Przeslawski, Christine Schönberg, R. Stuart-Smith, N. Barrett, G. Edgar, J. Colquhoun, M. Tran, A. Jordan, T. Rees, K. Gowlett-Holmes

Research output: Contribution to journalArticle

49 Citations (Scopus)

Abstract

© 2015 Althaus et al.This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Imagery collected by still and video cameras is an increasingly important tool for minimal impact, repeatable observations in the marine environment. Data generated from imagery includes identification, annotation and quantification of biological subjects and environmental features within an image. To be long-lived and useful beyond their project-specific initial purpose, and to maximize their utility across studies and disciplines, marine imagery data should use a standardised vocabulary of defined terms. This would enable the compilation of regional, national and/or global data sets from multiple sources, contributing to broadscale management studies and development of automated annotation algorithms. The classification scheme developed under the Collaborative and Automated Tools for Analysis of Marine Imagery (CATAMI) project provides such a vocabulary. The CATAMI classification scheme introduces Australian-wide acknowledged, standardised terminology for annotating benthic substrates and biota in marine imagery. It combines coarse-level taxonomy and morphology, and is a flexible, hierarchical classification that bridges the gap between habitat/ biotope characterisation and taxonomy, acknowledging limitations when describing biological taxa through imagery. It is fully described, documented, and maintained through curated online databases, and can be applied across benthic image collection methods, annotation platforms and scoring methods. Following release in 2013, the CATAMI classification scheme was taken up by a wide variety of users, including government, academia and industry. This rapid acceptance highlights the scheme's utility and the potential to facilitate broad-scale multidisciplinary studies of marine ecosystems when applied globally. Here we present the CATAMI classification scheme, describe its conception and features, and discuss its utility and the opportunities as well as challenges arising from its use.
Original languageEnglish
Pages (from-to)1-18
JournalPLoS One
Volume10
Issue number10
DOIs
Publication statusPublished - 2015

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Biota
Vocabulary
Imagery (Psychotherapy)
taxonomy
organisms
Taxonomies
Aquatic ecosystems
Video cameras
Terminology
Ecosystem
video cameras
biotopes
terminology
marine environment
Licensure
Substrates
Reproduction
industry
Industry
Research Design

Cite this

Althaus, F. ; Hill, N. ; Ferrari, R. ; Edwards, L. ; Przeslawski, R. ; Schönberg, Christine ; Stuart-Smith, R. ; Barrett, N. ; Edgar, G. ; Colquhoun, J. ; Tran, M. ; Jordan, A. ; Rees, T. ; Gowlett-Holmes, K. / A standardised vocabulary for identifying benthic biota and substrata from underwater imagery: The CATAMI classification scheme. In: PLoS One. 2015 ; Vol. 10, No. 10. pp. 1-18.
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Althaus, F, Hill, N, Ferrari, R, Edwards, L, Przeslawski, R, Schönberg, C, Stuart-Smith, R, Barrett, N, Edgar, G, Colquhoun, J, Tran, M, Jordan, A, Rees, T & Gowlett-Holmes, K 2015, 'A standardised vocabulary for identifying benthic biota and substrata from underwater imagery: The CATAMI classification scheme' PLoS One, vol. 10, no. 10, pp. 1-18. https://doi.org/10.1371/journal.pone.0141039

A standardised vocabulary for identifying benthic biota and substrata from underwater imagery: The CATAMI classification scheme. / Althaus, F.; Hill, N.; Ferrari, R.; Edwards, L.; Przeslawski, R.; Schönberg, Christine; Stuart-Smith, R.; Barrett, N.; Edgar, G.; Colquhoun, J.; Tran, M.; Jordan, A.; Rees, T.; Gowlett-Holmes, K.

In: PLoS One, Vol. 10, No. 10, 2015, p. 1-18.

Research output: Contribution to journalArticle

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AU - Hill, N.

AU - Ferrari, R.

AU - Edwards, L.

AU - Przeslawski, R.

AU - Schönberg, Christine

AU - Stuart-Smith, R.

AU - Barrett, N.

AU - Edgar, G.

AU - Colquhoun, J.

AU - Tran, M.

AU - Jordan, A.

AU - Rees, T.

AU - Gowlett-Holmes, K.

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