A comprehensive and user-friendly framework for 3D-data visualisation in invertebrates and other organisms

Thomas L. Semple, Rod Peakall, Nikolai J. Tatarnic

Research output: Contribution to journalArticle

Abstract

Methods for 3D-imaging of biological samples are experiencing unprecedented development, with tools such as X-ray micro-computed tomography (μCT) becoming more accessible to biologists. These techniques are inherently suited to small subjects and can simultaneously image both external and internal morphology, thus offering considerable benefits for invertebrate research. However, methods for visualising 3D-data are trailing behind the development of tools for generating such data. Our aim in this article is to make the processing, visualisation and pre- sentation of 3D-data easier, thereby encouraging more researchers to utilise 3D-imaging. Here, we present a comprehensive workflow for manipulating and visualising 3D-data, including basic and advanced options for producing images, videos and interactive 3D-PDFs, from both volume and surface-mesh renderings. We discuss the importance of visualisation for quantitative analysis of invertebrate morphology from 3D-data, and provide example figures illustrating the differ- ent options for generating 3D-figures for publication. As more biology journals adopt 3D-PDFs as a standard option, research on microscopic invertebrates and other organisms can be pre- sented in high-resolution 3D-figures, enhancing the way we communicate science.
Original languageEnglish
Pages (from-to)223-231
Number of pages9
JournalJournal of Morphology
Volume280
Issue number2
DOIs
Publication statusPublished - 1 Feb 2019

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Invertebrates
invertebrates
organisms
image analysis
micro-computed tomography
X-Ray Microtomography
Workflow
rendering
Research
biologists
Publications
quantitative analysis
X-radiation
researchers
methodology
Research Personnel
Biological Sciences
sampling

Cite this

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A comprehensive and user-friendly framework for 3D-data visualisation in invertebrates and other organisms. / Semple, Thomas L.; Peakall, Rod; Tatarnic, Nikolai J.

In: Journal of Morphology, Vol. 280, No. 2, 01.02.2019, p. 223-231.

Research output: Contribution to journalArticle

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