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  • Jacqueline Batley

Genome-wide association study identifies new loci for resistance to leptosphaeria maculans in canola

Raman, H., Raman, R., Coombes, N., Song, J., Diffey, S., Kilian, A., Lindbeck, K., Barbulescu, D. M., Batley, J., Edwards, D., Salisbury, P. A. & Marcroft, S., 24 Oct 2016, In : Frontiers in Plant Science. 7, OCTOBER, 1513.

Research output: Contribution to journalArticle

Open Access
17 Citations (Scopus)

Genome‐Wide Association Studies in Plants

Anderson, R., Edwards, D., Batley, J. & Bayer, P., 15 Feb 2019, eLS. John Wiley & Sons, p. 1-7 7 p.

Research output: Chapter in Book/Conference paperChapter

File
148 Downloads (Pure)

Genome-wide association analyses provide genomic insights into natural variation in heat tolerance of Brassica rapa

Chen, S., Hayward, A., Witt Hmon, K. P., Dey, S. S., Inturrisi, F. C., Dolatabadian, A., Neik, T. X., Yang, H., Nelson, M., Turner, N., Siddique, K., Cowling, W. & Batley, J., 2016.

Research output: Contribution to conferenceAbstract

Genome-wide analysis of the lateral organ boundaries domain gene family in brassica napus

Xie, T., Zeng, L., Chen, X., Rong, H., Wu, J., Batley, J., Jiang, J. & Wang, Y., 1 Mar 2020, In : Genes. 11, 3, 280.

Research output: Contribution to journalArticle

Open Access

Genome analysis identified novel candidate genes for ascochyta blight resistance in chickpea using whole genome re-sequencing data

Li, Y., Ruperao, P., Batley, J., Edwards, D., Davidson, J., Hobson, K. & Sutton, T., 17 Mar 2017, In : Frontiers in Plant Science. 8, 359.

Research output: Contribution to journalArticle

Open Access
14 Citations (Scopus)

Genetic and molecular regulation of seed storage proteins (SSPs) to improve protein nutritional value of oilseed rape (Brassica napus L.) seeds

Gacek, K., Bartkowiak-Broda, I. & Batley, J., 2 Jul 2018, In : Frontiers in Plant Science. 9, 890.

Research output: Contribution to journalReview article

Open Access
9 Citations (Scopus)
1 Citation (Scopus)

Exploring the application of wild species for crop improvement in a changing climate

Zhang, F. & Batley, J., 3 Feb 2020, (Accepted/In press) In : Current Opinion in Plant Biology.

Research output: Contribution to journalReview article

Epigenetics: Potentials and Challenges in Crop Breeding

Tirnaz, S. & Batley, J., 7 Oct 2019, In : Molecular Plant. 12, 10, p. 1309-1311 3 p.

Research output: Contribution to journalComment/debate

1 Citation (Scopus)

"Doubled-haploid" allohexaploid Brassica lines lose fertility and viability and accumulate genetic variation due to genomic instability

Mwathi, M. W., Schiessl, S. V., Batley, J. & Mason, A. S., 1 Dec 2019, In : Chromosoma. 128, 4, p. 521-532 12 p.

Research output: Contribution to journalArticle

DNA Methylation: Toward Crop Disease Resistance Improvement

Tirnaz, S. & Batley, J., 8 Oct 2019, In : Trends in Plant Science.

Research output: Contribution to journalReview article

3 Citations (Scopus)

Cytogenetic and molecular characterization of B-genome introgression lines of Brassica napus L.

Dhaliwal, I., Mason, A. S., Banga, S., Bharti, S., Kaur, B., Gurung, A. M., Salisbury, P. A., Batley, J. & Banga, S. S., Jan 2017, In : G3: Genes, Genomes, Genetics. 7, 1, p. 77-86 10 p.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)

Current status and challenges in identifying disease resistance genes in Brassica napus

Neik, T. X., Barbetti, M. & Batley, J., 6 Nov 2017, In : Frontiers in Plant Science. 8, p. 1-37 1788.

Research output: Contribution to journalArticle

Open Access
File
15 Citations (Scopus)
432 Downloads (Pure)

CropSNPdb: a database of SNP array data for Brassica crops and hexaploid bread wheat

Scheben, A., Verpaalen, B., Lawley, C. T., Chan, C-K. K., Bayer, P. E., Batley, J. & Edwards, D., Apr 2019, In : Plant Journal. 98, 1, p. 142-152 11 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Copy number variation and disease resistance in plants

Dolatabadian, A., Patel, D. A., Edwards, D. & Batley, J., Dec 2017, In : Theoretical and Applied Genetics. 130, 12, p. 2479-2490 12 p.

Research output: Contribution to journalArticle

Open Access
File
14 Citations (Scopus)
537 Downloads (Pure)

Construction and comparison of three reference-quality genome assemblies for soybean

Valliyodan, B., Cannon, S. B., Bayer, P. E., Shu, S., Brown, A. V., Ren, L., Jenkins, J., Chung, C. Y-L., Chan, T-F., Daum, C. G., Plott, C., Hastie, A., Baruch, K., Barry, K. W., Huang, W., Patil, G., Varshney, R. K., Hu, H., Batley, J., Yuan, Y. & 10 others, Song, Q., Stupar, R. M., Goodstein, D. M., Stacey, G., Lam, H-M., Jackson, S. A., Schmutz, J., Grimwood, J., Edwards, D. & Nguyen, H. T., Dec 2019, In : The Plant Journal. 100, 5, p. 1066-1082 39 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Characterization of disease resistance genes in the Brassica napus pangenome reveals significant structural variation

Dolatabadian, A., Bayer, P. E., Tirnaz, S., Hurgobin, B., Edwards, D. & Batley, J., 25 Sep 2019, In : Plant Biotechnology Journal. 14 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Centromere Locations in Brassica A and C Genomes Revealed Through Half-Tetrad Analysis

Mason, A. S., Rousseau-Gueutin, M., Morice, J., Bayer, P., Besharat, N., Cousin, A., Pradhan, A., Parkin, I. A., Chevre, A. M., Batley, J. & Nelson, M., Feb 2016, In : Genetics. 202, 2, p. 513-523

Research output: Contribution to journalArticle

Open Access
15 Citations (Scopus)

Can genomics assist the phenological adaptation of canola to new and changing environments?

Nelson, M. N., Lilley, J. M., Helliwell, C., Taylor, C. M., Siddique, K. H. M., Chen, S., Raman, H., Batley, J. & Cowling, W. A., 29 Mar 2016, In : Crop and Pasture Science. 67, 3-4, p. 284-297 14 p.

Research output: Contribution to journalReview article

9 Citations (Scopus)

Brassica 2016 Phenomics to genomics and everything in between

Van De Wouw, A. & Batley, J., 1 Jan 2018, In : Crop and Pasture Science. 69, 1, p. i

Research output: Contribution to journalEditorial

Bias in resistance gene prediction due to repeat masking

Bayer, P. E., Edwards, D. & Batley, J., 1 Oct 2018, In : Nature Plants. 4, 10, p. 762-765 4 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

A user guide to the Brassica60K Illumina Infinium™ SNP genotyping array

Mason, A. S., Higgins, E. E., Snowdon, R. J., Batley, J., Stein, A., Werner, C. & Parkin, I. A. P., Apr 2017, In : Theoretical and Applied Genetics. 130, 4, p. 621–633 13 p.

Research output: Contribution to journalReview article

31 Citations (Scopus)

Assessing Variations in Host Resistance to Fusarium oxysporum f sp. cubense Race 4 in Musa Species, With a Focus on the Subtropical Race 4

Chen, A., Sun, J., Matthews, A., Armas-Egas, L., Chen, N., Hamill, S., Mintoff, S., Tran-Nguyen, L. T. T., Batley, J. & Aitken, E. A. B., 15 May 2019, In : Frontiers in Microbiology. 10, 13 p., 1062.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Assembly and comparison of two closely related Brassica napus genomes

Bayer, P. E., Hurgobin, B., Golicz, A. A., Chan, C-K. K., Yuan, Y., Lee, H., Renton, M., Meng, J., Li, R., Long, Y., Zou, J., Bancroft, I., Chalhoub, B., King, G. J., Batley, J. & Edwards, D., Dec 2017, In : Plant Biotechnology Journal. 15, 12, p. 1-9 9 p.

Research output: Contribution to journalArticle

Open Access
41 Citations (Scopus)

A reference genome for pea provides insight into legume genome evolution

Kreplak, J., Madoui, M. A., Cápal, P., Novák, P., Labadie, K., Aubert, G., Bayer, P. E., Gali, K. K., Syme, R. A., Main, D., Klein, A., Bérard, A., Vrbová, I., Fournier, C., d’Agata, L., Belser, C., Berrabah, W., Toegelová, H., Milec, Z., Vrána, J. & 25 others, Lee, H. T., Kougbeadjo, A., Térézol, M., Huneau, C., Turo, C. J., Mohellibi, N., Neumann, P., Falque, M., Gallardo, K., McGee, R., Tar’an, B., Bendahmane, A., Aury, J. M., Batley, J., Le Paslier, M. C., Ellis, N., Warkentin, T. D., Coyne, C. J., Salse, J., Edwards, D., Lichtenzveig, J., Macas, J., Doležel, J., Wincker, P. & Burstin, J., 2 Sep 2019, In : Nature Genetics. 51, 9, p. 1411-1422 12 p.

Research output: Contribution to journalArticle

Open Access
20 Citations (Scopus)

An efficient approach to BAC based assembly of complex genomes

Visendi, P., Berkman, P. J., Hayashi, S., Golicz, A. A., Bayer, P., Ruperao, P., Hurgobin, B., Montenegro, J., Chan, K., Staňková, H., Batley, J., Šimková, H., Doležel, J. & Edwards, D., 20 Jan 2016, In : Plant Methods. 12, 1, p. 1

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)

An advanced reference genome of Trifolium subterraneum L. reveals genes related to agronomic performance

Kaur, P., Bayer, P. E., Milec, Z., Vrána, J., Yuan, Y., Appels, R., Edwards, D., Batley, J., Nichols, P., Erskine, W. & Doležel, J., 12 Jul 2017, In : Plant Biotechnology Journal. 15, 8, p. 1034-1046 13 p.

Research output: Contribution to journalArticle

Open Access
12 Citations (Scopus)

A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome

Clarke, W. E., Higgins, E. E., Plieske, J., Wieseke, R., Sidebottom, C., Khedikar, Y., Batley, J., Edwards, D., Meng, J., Li, R., Lawley, C. T., Pauquet, J., Laga, B., Cheung, W., Iniguez-Luy, F., Dyrszka, E., Rae, S., Stich, B., Snowdon, R. J., Sharpe, A. G. & 2 others, Ganal, M. W. & Parkin, I. A. P., 2016, In : Theoretical and Applied Genetics. 129, 10, p. 1887-1899

Research output: Contribution to journalArticle

Open Access
68 Citations (Scopus)

Agricultural selection and presence-absence variation in spring-type canola germplasm

Mason, A. S., Chauhan, P., Banga, S., Banga, S. S., Salisbury, P., Barbetti, M. J. & Batley, J., 1 Jan 2018, Crop & Pasture Science: 2016 International Brassica Conference. Van de Wouw, A. & Batley, J. (eds.). 1 ed. Australia: CSIRO Publishing, Vol. 69. p. 55-64 10 p. (Crop and Pasture Science).

Research output: Chapter in Book/Conference paperConference paper

Open Access
File
2 Citations (Scopus)
365 Downloads (Pure)

A differential k-mer analysis pipeline for comparing RNA-Seq transcriptome and meta-transcriptome datasets without a reference

Chan, C. K. K., Rosic, N., Lorenc, M. T., Visendi, P., Lin, M., Kaniewska, P., Ferguson, B. J., Gresshoff, P. M., Batley, J. & Edwards, D., 1 Mar 2019, In : Functional and Integrative Genomics. 19, 2, p. 363-371 9 p.

Research output: Contribution to journalArticle