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• Article

  Approaches to scheduling water allocations to kikuyugrass grown on a water repellent soil in a drying-climate

  Barton, L., Flottmann, S. J., Stefanovia, K. T. & Colmer, T. D., 1 Mar 2020, In : Agricultural Water Management. 230, 105957.

  Research output: Contribution to journal › Article

  • water repellent soils
  • water allocation
  • allocation
  • drying
  • climate

• Characterization of the multigene family TaHKT 2;1 in bread wheat and the role of gene members in plant Na+ and K+ status

  Ariyarathna, H. C. K., Ul Haq, T., Colmer, T. & Francki, M. G., 2014, In : BMC Plant Biology. 14, 1, p. 15pp

  Research output: Contribution to journal › Article

  Open Access

  • multigene family
  • wheat
  • aneuploidy
  • genes
  • pseudogenes
  10 Citations (Scopus)

• CO2 and O2 dynamics in leaves of aquatic plants with C3 or CAM photosynthesis - application of a novel CO2 microsensor

  Pedersen, O., Colmer, T. D., Garcia-Robledo, E. & Revsbech, N. P., 24 Sep 2018, In : Annals of Botany. 122, 4, p. 605-615 11 p.

  Research output: Contribution to journal › Article

  • Crassulacean acid metabolism
  • aquatic plants
  • photosynthesis
  • carbon dioxide
  • C3 plants
  8 Citations (Scopus)

• Contrasting submergence tolerance in two species of stem-succulent halophytes is not determined by differences in stem internal oxygen dynamics

  Konnerup, D., Moir-Barnetson, L., Pedersen, O., Veneklaas, E. & Colmer, T., 3 Mar 2015, In : Annals of Botany. 115, 3, p. 409-418

  Research output: Contribution to journal › Article

  Open Access

  • flooding tolerance
  • halophytes
  • oxygen
  • stems
  • submergence
  6 Citations (Scopus)

• Cross-tolerance for drought, heat and salinity stresses in chickpea (Cicer arietinum L.)

  Pushpavalli, R., Berger, J. D., Turner, N. C., Siddique, K. H. M., Colmer, T. D. & Vadez, V., 1 Jun 2020, In : Journal of Agronomy and Crop Science. 206, 3, p. 405-419 15 p.

  Research output: Contribution to journal › Article

  • Cicer arietinum
  • salt stress
  • heat stress
  • water stress
  • salinity
  2 Citations (Scopus)

• Defining the waterlogging tolerance of Ornithopus spp. for the temperate pasture zone of southern Australia

  Kidd, D. R., Di Bella, C. E., Kotula, L., Colmer, T. D., Ryan, M. H. & Striker, G. G., May 2020, In : Crop and Pasture Science. 71, 5, p. 506-516 11 p.

  Research output: Contribution to journal › Article

  • Ornithopus
  • flooded conditions
  • Ornithopus sativus
  • pastures
  • nutrient solutions

• Diel O2 Dynamics in Partially and Completely Submerged Deepwater Rice: Leaf Gas Films Enhance Internodal O2 Status, Influence Gene Expression and Accelerate Stem Elongation for 'Snorkelling' during Submergence

  Mori, Y., Kurokawa, Y., Koike, M., Malik, A. I., Colmer, T. D., Ashikari, M., Pedersen, O. & Nagai, K., 1 May 2019, In : Plant & Cell Physiology. 60, 5, p. 973-985 13 p.

  Research output: Contribution to journal › Article

  • submergence
  • Oryza
  • stem elongation
  • Gases
  • gases
  4 Citations (Scopus)

• Drivers of plant traits that allow survival in wetlands

  Pan, Y., Cieraad, E., Clarkson, B. R., Colmer, T. D., Pedersen, O., Visser, E. J. W., Voesenek, L. A. C. J. & van Bodegom, P. M., 1 May 2020, In : Functional Ecology. 34, 5, p. 956-967 12 p.

  Research output: Contribution to journal › Article

  Open Access

  • wetland plants
  • wetlands
  • wetland
  • root shoot ratio
  • porosity
  3 Citations (Scopus)

• Drought tolerances of three stem-succulent halophyte species of an inland semiarid salt lake system

  Marchesini, V., Yin, C., Colmer, T. & Veneklaas, E., Nov 2014, In : Functional Plant Biology. 41, 12, p. 1230-1238 9 p.

  Research output: Contribution to journal › Article

  • salt lakes
  • halophytes
  • drought tolerance
  • drought
  • shoots
  6 Citations (Scopus)

• Early physiological flood tolerance is followed by slow post-flooding root recovery in the dryland riparian tree Eucalyptus camaldulensis subsp. refulgens

  Argus, R., Colmer, T. & Grierson, P., Jun 2015, In : Plant, Cell & Environment. 38, 6, p. 11889-1199

  Research output: Contribution to journal › Article

  Open Access

  File

  • Eucalyptus
  • Eucalyptus camaldulensis
  • arid lands
  • Photosynthesis
  • Soil
  27 Citations (Scopus)

  316 Downloads (Pure)

• Effect of Timing and Duration of Soil Saturation on Soilborne Pythium Diseases of Common Bean (Phaseolus vulgaris)

  Li, Y. P., You, M., Colmer, T. & Barbetti, M., 2015, In : Plant Disease. 99, 1, p. 112-118

  Research output: Contribution to journal › Article
  9 Citations (Scopus)

• Effects of organic acids on the formation of the barrier to radial oxygen loss in roots of hordeum marinum

  Kotula, L., Colmer, T. & Nakazono, M., 2014, In : Functional Plant Biology. 41, 2, p. 187-202

  Research output: Contribution to journal › Article

  • Hordeum marinum
  • hexanoic acid
  • organic acids and salts
  • oxygen
  • butyric acid
  16 Citations (Scopus)

• Efficient use of energy in anoxia-tolerant plants with focus on germinating rice seedlings

  Atwell, B. J., Greenway, H. & Colmer, T., 2015, In : New Phytologist. 206, 1, p. 36-56

  Research output: Contribution to journal › Article

  • Seedlings
  • Oryza
  • hypoxia
  • Hypoxia
  • peptidylprolyl isomerase
  25 Citations (Scopus)

• Gas film retention and underwater photosynthesis during field submergence of four contrasting rice genotypes

  Winkel, A., Pedersen, O., Ella, E. S., Ismail, A. M. & Colmer, T., 2014, In : Journal of Experimental Botany. 65, 12, p. 3225-3233

  Research output: Contribution to journal › Article

  Open Access

  • Photosynthesis
  • submergence
  • Oryza
  • Gases
  • photosynthesis
  41 Citations (Scopus)

• Global patterns of the leaf economics spectrum in wetlands

  Pan, Y., Cieraad, E., Armstrong, J., Armstrong, W., Clarkson, B. R., Colmer, T. D., Pedersen, O., Visser, E. J. W., Voesenek, L. A. C. J. & van Bodegom, P. M., 1 Dec 2020, In : Nature Communications. 11, 1, 4519.

  Research output: Contribution to journal › Article

  Open Access

  • wetlands
  • Wetlands
  • economics
  • leaves
  • Economics

• Growth responses of Melilotus siculus accessions to combined salinity and root-zone hypoxia are correlated with differences in tissue ion concentrations and not differences in root aeration

  Striker, G. G., Teakle, N., Colmer, T. & Barrett-Lennard, E., 2015, In : Environmental and Experimental Botany. 109, p. 89-98

  Research output: Contribution to journal › Article

  • Melilotus siculus
  • growth response
  • hypoxia
  • shoot
  • aeration
  14 Citations (Scopus)

• Heat stress of two tropical seagrass species during low tides - impact on underwater net photosynthesis, dark respiration and diel in situ internal aeration

  Pedersen, O., Colmer, T. D., Borum, J., Zavala-Perez, A. & Kendrick, G. A., 2016, In : New Phytologist. 210, 4, p. 1207-1218 12 p.

  Research output: Contribution to journal › Article

  • Photosynthesis
  • tides
  • Heat-Shock Response
  • aeration
  • heat stress
  55 Citations (Scopus)

• Investigating drought tolerance in chickpea using genome-wide association mapping and genomic selection based on whole-genome resequencing data

  Li, Y., Ruperao, P., Batley, J., Edwards, D., Khan, T., Colmer, T. D., Pang, J., Siddique, K. H. M. & Sutton, T., 19 Feb 2018, In : Frontiers in Plant Science. 9, 190.

  Research output: Contribution to journal › Article

  Open Access

  • marker-assisted selection
  • drought tolerance
  • single nucleotide polymorphism
  • chromosome mapping
  • genome
  29 Citations (Scopus)

• Leaf gas films, underwater photosynthesis and plant species distributions in a flood gradient

  Winkel, A., Visser, E. J. W., Colmer, T., Brodersen, K. P., Voesenek, L. A. C. J., Sand-Jensen, K. & Pedersen, O., 2016, In : Plant, Cell and Environment. 39, 7, p. 1537-1548

  Research output: Contribution to journal › Article

  • Plant Dispersal
  • Photosynthesis
  • biogeography
  • Gases
  • photosynthesis
  19 Citations (Scopus)

• Leaf gas films contribute to rice (Oryza sativa) submergence tolerance during saline floods

  Herzog, M., Konnerup, D., Pedersen, O., Winkel, A. & Colmer, T. D., May 2018, In : Plant Cell and Environment. 41, 5, p. 885-897 13 p.

  Research output: Contribution to journal › Article

  • flooding tolerance
  • Oryza
  • Oryza sativa
  • Gases
  • films (materials)
  7 Citations (Scopus)

• Life at the boundary: Photosynthesis at the soil-fluid interface. A synthesis focusing on mosses

  Raven, J. & Colmer, T., 2016, In : Journal of Experimental Botany. 67, 6, p. 1613-1623

  Research output: Contribution to journal › Article

  • Bryophyta
  • Photosynthesis
  • Soil
  • mosses and liverworts
  • photosynthesis
  9 Citations (Scopus)

• Linking oxygen availability with membrane potential maintenance and K+ retention of barley roots: Implications for waterlogging stress tolerance

  Zeng, F., Konnerup, D., Shabala, L., Zhou, M., Colmer, T., Zhang, G. & Shabala, S. N., 18 Aug 2014, In : Plant, Cell and Environment. 37, 10, p. 2325-2338 14 p.

  Research output: Contribution to journal › Article

  • Hordeum
  • flooded conditions
  • membrane potential
  • Membrane Potentials
  • stress tolerance
  31 Citations (Scopus)

• Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa)

  Shiono, K., Yamauchi, T., Yamazaki, S., Mohanty, B., Malik, I., Nagamura, Y., Nishizawa, N., Tsutsumi, N., Colmer, T. & Nakazono, M., 2014, In : Journal of Experimental Botany. 65, 17, p. 4795-4806

  Research output: Contribution to journal › Article

  • suberin
  • Oryza
  • microarray technology
  • Microarray Analysis
  • lasers
  34 Citations (Scopus)

• Neglecting legumes has compromised human health and sustainable food production

  Foyer, C., Lam, H. M., Nguyen, H. T., Siddique, K., Varshney, R., Colmer, T., Cowling, W., Bramley, H., Mori, T., Hodgson, J., Cooper, J. W., Miller, A. J., Kunert, K., Vorster, J., Cullis, C., Ozga, J. A., Wahlqvist, M. L., Liang, Y., Shou, H., Shi, K. & 6 others, Yu, J., Fodor, N., Kaiser, B. N., Wong, F. L., Valliyodan, B. & Considine, M., 2 Aug 2016, In : Nature Plants. 2, 8, p. 1-10

  Research output: Contribution to journal › Article

  Open Access

  File

  • health foods
  • food production
  • human health
  • legumes
  • food security
  220 Citations (Scopus)

  720 Downloads (Pure)

• Osmotic adjustment and energy limitations to plant growth in saline soil

  Munns, R., Passioura, J. B., Colmer, T. D. & Byrt, C. S., Feb 2020, In : New Phytologist. 225, 3, p. 1091-1096

  Research output: Contribution to journal › Article

  • saline soils
  • Soil
  • plant growth
  • energy
  • Plant Roots
  40 Citations (Scopus)

• Oxygen deficiency and salinity affect cell-specific ion concentrations in adventitious roots of barley (Hordeum vulgare)

  Kotula, L., Clode, P., Striker, G., Pedersen, O., Läuchli, A., Shabala, S. & Colmer, T., Dec 2015, In : New Phytologist. 208, 4, p. 1114-1125 12 p.

  Research output: Contribution to journal › Article

  • Salinity
  • Hordeum
  • adventitious roots
  • Hordeum vulgare
  • hypoxia
  32 Citations (Scopus)

• Oxygen loss from seagrass roots coincides with colonisation of sulphide-oxidising cable bacteria and reduces sulphide stress

  Martin, B. C., Bougoure, J., Ryan, M. H., Bennett, W. W., Colmer, T. D., Joyce, N. K., Olsen, Y. S. & Kendrick, G. A., 23 Oct 2018, In : ISME Journal.

  Research output: Contribution to journal › Article

  • Sulfides
  • seagrass
  • cable
  • sulfides
  • colonization
  14 Citations (Scopus)

• Photosynthetic response to globally increasing CO2 of co-occurring temperate seagrass species

  Borum, J., Pedersen, O., Kotula, L., Fraser, M., Statton, J., Colmer, T. & Kendrick, G., Jun 2016, In : Plant, Cell and Environment. 39, 6, p. 1240-1250

  Research output: Contribution to journal › Article

  Open Access

  File

  • Photosynthesis
  • photosynthesis
  • Zosteraceae
  • Carbon
  • dissolved inorganic carbon
  25 Citations (Scopus)

  805 Downloads (Pure)

• Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

  Varshney, R. K., Thudi, M., Roorkiwal, M., He, W., Upadhyaya, H. D., Yang, W., Bajaj, P., Cubry, P., Rathore, A., Jian, J., Doddamani, D., Khan, A. W., Garg, V., Chitikineni, A., Xu, D., Gaur, P. M., Singh, N. P., Chaturvedi, S. K., Nadigatla, G. V. P. R., Krishnamurthy, L. & 20 others, Dixit, G. P., Fikre, A., Kimurto, P. K., Sreeman, S. M., Bharadwaj, C., Tripathi, S., Wang, J., Lee, S-H., Edwards, D., Polavarapu, K. K. B., Penmetsa, R. V., Crossa, J., Nguyen, H. T., Siddique, K. H. M., Colmer, T. D., Sutton, T., von Wettberg, E., Vigouroux, Y., Xu, X. & Liu, X., May 2019, In : Nature Genetics. 51, 5, p. 857-+ 11 p.

  Research output: Contribution to journal › Article

  Open Access
  36 Citations (Scopus)

• Response of chickpea (Cicer arietinum L.) to terminal drought: leaf stomatal conductance, pod abscisic acid concentration, and seed set

  Pang, J., Turner, N. C., Khan, T., Du, Y. L., Xiong, J-L., Colmer, T. D., Devilla, R., Stefanova, K. & Siddique, K. H. M., 20 Apr 2016, In : Journal of Experimental Botany. 68, 8, p. 1973-1985 13 p.

  Research output: Contribution to journal › Article

  Open Access
  40 Citations (Scopus)

• Responses of rice to Fe2+ in aerated and stagnant conditions: Growth, root porosity and radial oxygen loss barrier

  Mongon, J., Konnerup, D., Colmer, T. & Rerkasem, B., 2014, In : Functional Plant Biology. 41, 9, p. 922-929

  Research output: Contribution to journal › Article

  • porosity
  • root growth
  • iron
  • oxygen
  • rice
  15 Citations (Scopus)

• Rice acclimation to soil flooding: Low concentrations of organic acids can trigger a barrier to radial oxygen loss in roots

  Colmer, T. D., Kotula, L., Malik, A. I., Takahashi, H., Konnerup, D., Nakazono, M. & Pedersen, O., 1 Jul 2019, In : Plant Cell and Environment. 42, 7, p. 2183-2197 15 p.

  Research output: Contribution to journal › Article

  • hexanoic acid
  • Acclimatization
  • Oryza
  • Soil
  • Caproates
  6 Citations (Scopus)

• Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance

  Kurokawa, Y., Nagai, K., Huan, P. D., Shimazaki, K., Qu, H., Mori, Y., Toda, Y., Kuroha, T., Hayashi, N., Aiga, S., Itoh, J. I., Yoshimura, A., Sasaki-Sekimoto, Y., Ohta, H., Shimojima, M., Malik, A. I., Pedersen, O., Colmer, T. D. & Ashikari, M., 1 Jun 2018, In : New Phytologist. 218, 4, p. 1558-1569 12 p.

  Research output: Contribution to journal › Article

  • Waxes
  • Oryza
  • Hydrophobic and Hydrophilic Interactions
  • hydrophobicity
  • waxes
  30 Citations (Scopus)

• Root O₂ consumption, CO₂ production and tissue concentration profiles in chickpea, as influenced by environmental hypoxia

  Colmer, T. D., Winkel, A., Kotula, L., Armstrong, W., Revsbech, N. P. & Pedersen, O., 1 Apr 2020, In : New Phytologist. 226, 2, p. 373-384 12 p.

  Research output: Contribution to journal › Article

  • Cicer
  • hypoxia
  • carbon dioxide
  • Hypoxia
  • Blood Vessels
  4 Citations (Scopus)

• Root phenotypes of dwarf and "overgrowth" SLN1 barley mutants, and implications for hypoxic stress tolerance

  Moriconi, J., Kotula, L., Santa-Maria, G. E. & Colmer, T. D., 2019, In : Journal of Plant Physiology. 234, p. 60-70 11 p.

  Research output: Contribution to journal › Article
  2 Citations (Scopus)

• Root-zone hypoxia reduces growth of the tropical forage grass Urochloa humidicola in high-nutrient but not low-nutrient conditions

  Jiménez, J. D. L. C., Kotula, L., Veneklaas, E. J. & Colmer, T. D., 27 Nov 2019, In : Annals of Botany. 124, 6, p. 1019-1032 14 p.

  Research output: Contribution to journal › Article

  • Urochloa humidicola
  • forage grasses
  • hypoxia
  • rhizosphere
  • nutrients
  4 Citations (Scopus)

• Salinity tolerance in chickpea is associated with the ability to 'exclude' Na from leaf mesophyll cells

  Kotula, L., Clode, P. L., Jimenez, J. D. L. C. & Colmer, T. D., 24 Sep 2019, In : Journal of Experimental Botany. 70, 18, p. 4991-5002 12 p.

  Research output: Contribution to journal › Article

  Open Access

  • Mesophyll Cells
  • Cicer
  • Salt Tolerance
  • mesophyll
  • Photosynthesis
  7 Citations (Scopus)

• Salinity tolerances of three succulent halophytes (Tecticornia spp.) differentially distributed along a salinity gradient

  Moir-Barnetson, L., Veneklaas, E. & Colmer, T., 7 Jun 2016, In : Functional Plant Biology. 43, 8, p. 739-750

  Research output: Contribution to journal › Article

  • halophytes
  • salinity
  • shoots
  • Bidens
  • salt lakes
  6 Citations (Scopus)

• Salinization of the soil solution decreases the further accumulation of salt in the root zone of the halophyte Atriplex nummularia Lindl. growing above shallow saline groundwater

  Alharby, H. F., Colmer, T. D. & Barrett-Lennard, E. G., 1 Jan 2018, In : Plant Cell and Environment. 41, 1, p. 99-110 12 p.

  Research output: Contribution to journal › Article

  • Atriplex
  • Salt-Tolerant Plants
  • Atriplex nummularia
  • Groundwater
  • soil salinization
  8 Citations (Scopus)

• Salt accumulation and depletion in the root-zone of the halophyte Atriplex nummularia Lindl.: Influence of salinity, leaf area and plant water use

  Al Harby, H. F., Colmer, T. & Barrett-Lennard, E., 2014, In : Plant and Soil. 382, 1-2, p. 31-41

  Research output: Contribution to journal › Article

  • Atriplex nummularia
  • halophyte
  • leaf area
  • halophytes
  • rhizosphere
  8 Citations (Scopus)

• Salt sensitivity in chickpea: Growth, photosynthesis, seed yield components and tissue ion regulation in contrasting genotypes

  Khan, H., Siddique, K., Munir, R. & Colmer, T., 2015, In : Journal of Plant Physiology. 182, p. 1-12

  Research output: Contribution to journal › Article

  • Cicer
  • Photosynthesis
  • Seeds
  • yield components
  • seed yield
  36 Citations (Scopus)

• Salt sensitivity in chickpea (Cicer arietinumL.): Ions in reproductive tissues and yield components in contrasting genotypes

  Kotula, L., Khan, H., Quealy, J., Turner, N., Vadez, V., Siddique, K., Clode, P. & Colmer, T., 2015, In : Plant, Cell and Environment. 38, 8, p. 1565-1577

  Research output: Contribution to journal › Article

  Open Access

  • Cicer
  • Seeds
  • yield components
  • Salts
  • Ions
  33 Citations (Scopus)

• Salt sensitivity in chickpea is determined by sodium toxicity

  Khan, H., Siddique, K. H. M. & Colmer, T. D., 2016, In : Planta. 244, 3, p. 623-637 15 p.

  Research output: Contribution to journal › Article

  • Cicer
  • Salts
  • Sodium
  • sodium
  • salts
  14 Citations (Scopus)

• Salt Stress Delayed Flowering and Reduced Reproductive Success of Chickpea (Cicer arietinum L.), A Response Associated with Na+ Accumulation in Leaves

  Pushpavalli, R., Quealy, J., Colmer, T. D., Turner, N. C., Siddique, K. H. M., Rao, M. V. & Vadez, V., 2016, In : Journal of Agronomy and Crop Science. 202, 2, p. 125-138 14 p.

  Research output: Contribution to journal › Article

  • Cicer arietinum
  • reproductive success
  • salt stress
  • flowering
  • salinity
  19 Citations (Scopus)

• Sensitivity of chickpea and faba bean to root-zone hypoxia, elevated ethylene, and carbon dioxide

  Munir, R., Konnerup, D., Khan, H. A., Siddique, K. H. M. & Colmer, T. D., 1 Jan 2019, In : Plant Cell and Environment. 42, 1, p. 85-97 13 p.

  Research output: Contribution to journal › Article

  • Cicer
  • Vicia faba
  • ethylene
  • faba beans
  • Carbon Dioxide
  8 Citations (Scopus)

• Spatio-temporal relief from hypoxia and production of reactive oxygen species during bud burst in grapevine (Vitis vinifera)

  Meitha, K., Konnerup, D., Colmer, T., Considine, J., Foyer, C. & Considine, M., 3 Sep 2015, In : Annals of Botany. 116, 4, p. 703-711

  Research output: Contribution to journal › Article

  Open Access

  • Vitis vinifera
  • hypoxia
  • reactive oxygen species
  • buds
  • meristems
  24 Citations (Scopus)

• Spectral detection of stress-related pigments in salt-lake succulent halophytic shrubs

  Marchesini, V., Guerschman, J. P., Schweiggert, R. M., Colmer, T. & Veneklaas, E., Oct 2016, In : International Journal of Applied Earth Observation and Geoinformation. 52, p. 457-463

  Research output: Contribution to journal › Article

  Open Access

  File

  • Chlorophyll
  • Pigments
  • Lakes
  • saline lake
  • pigment
  256 Downloads (Pure)

• Submergence tolerance and recovery in Lotus: Variation among fifteen accessions in response to partial and complete submergence

  Di Bella, C. E., Kotula, L., Striker, G. G. & Colmer, T. D., Jun 2020, In : Journal of Plant Physiology. 249, 153180.

  Research output: Contribution to journal › Article

  • Lotus
  • flooding tolerance
  • submergence
  • Lotus glaber
  • Fabaceae

• The mechanism of improved aeration due to gas films on leaves of submerged rice

  Verboven, P., Pedersen, O., Ho, Q., Nicolaï, B. M. & Colmer, T., 2014, In : Plant, Cell and Environment. 37, 10, p. 2433-2452

  Research output: Contribution to journal › Article

  • Oryza
  • aeration
  • Gases
  • films (materials)
  • gases
  28 Citations (Scopus)

• Tissue-specific root ion profiling reveals essential roles of the CAX and ACA calcium transport systems in response to hypoxia in Arabidopsis

  Wang, F., Chen, Z-H., Liu, X., Colmer, T. D., Zhou, M. & Shabala, S., Jun 2016, In : Journal of Experimental Botany. 67, 12, p. 3747-3762 16 p.

  Research output: Contribution to journal › Article

  Open Access
  32 Citations (Scopus)