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• Article

  Aerenchymatous phellem in hypocotyl and roots enables O₂ transport in Melilotus siculus

  Teakle, N., Armstrong, J., Barrett-Lennard, E. & Colmer, T., 2011, In : New Phytologist. 190, p. 340

  Research output: Contribution to journal › Article
  32 Citations (Scopus)

• A GmAOX2b antisense gene compromises vegetative growth and seed production in soybean

  Chai, T-T., Simmonds, D., Day, D. A., Colmer, T. & Finnegan, P., 2012, In : Planta. 236, p. 199 - 207

  Research output: Contribution to journal › Article
  12 Citations (Scopus)

• A major locus involved in the formation of the radial oxygen loss barrier in adventitious roots of teosinte Zea nicaraguensis is located on the short-arm of chromosome 3

  Watanabe, K., Takahashi, H., Sato, S., Nishiuchi, S., Omori, F., Malik, A. I., Colmer, T. D., Mano, Y. & Nakazono, M., 1 Feb 2017, In : Plant Cell and Environment. 40, 2, p. 304-316 13 p.

  Research output: Contribution to journal › Article

  • Zea nicaraguensis
  • Chromosomes, Human, Pair 3
  • Zea
  • Zea mays
  • adventitious roots
  20 Citations (Scopus)

• Ameliorating water repellency under turfgrass of contrasting soil organic matter content: Effect of wetting agent formulation and application frequency

  Barton, L. & Colmer, T., 2011, In : Agricultural Water Management. 99, p. 1

  Research output: Contribution to journal › Article
  14 Citations (Scopus)

• Anatomical and biochemical characterisation of a barrier to radial O2 loss in adventitious roots of two contrasting Hordeum marinum accessions

  Kotula, L., Schreiber, L., Colmer, T. D. & Nakazono, M., 2017, In : Functional Plant Biology. 44, 9, p. 845-857

  Research output: Contribution to journal › Article

  • Hordeum marinum
  • adventitious roots
  • flooded conditions
  • suberization
  • suberin
  17 Citations (Scopus)

• Aquatic adventitious root development in partially and completely submerged wetland plants Cotula coronopifolia and Meionectes brownii

  Rich, S., Ludwig, M. & Colmer, T., 2012, In : Annals of Botany. 110, p. 405-414

  Research output: Contribution to journal › Article
  33 Citations (Scopus)

• Aquatic adventitious roots of the wetland plant Meionectes brownii can photosynthesize: implications for root function during flooding

  Rich, S., Ludwig, M., Pedersen, O. & Colmer, T., 2011, In : New Phytologist. 190, p. 311-319

  Research output: Contribution to journal › Article

  • Haloragis
  • Plant Roots
  • Wetlands
  • wetland plants
  • adventitious roots
  21 Citations (Scopus)

• Assessment of ICCV 2 × JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTL for seed yield and yield components

  Vadez, V., Krishnamurthy, L., Thudi, M., Anuradha, C., Colmer, T., Turner, N., Siddique, K., Gaur, P. M. & Varshney, R. K., 2012, In : Molecular Breeding. June, p. 13pp

  Research output: Contribution to journal › Article
  50 Citations (Scopus)

• CO2 and O2 dynamics in leaves of aquatic plants with C3 or CAM photosynthesis - application of a novel CO2 microsensor

  Pedersen, O., Colmer, T. D., Garcia-Robledo, E. & Revsbech, N. P., 24 Sep 2018, In : Annals of Botany. 122, 4, p. 605-615 11 p.

  Research output: Contribution to journal › Article

  • Crassulacean acid metabolism
  • aquatic plants
  • photosynthesis
  • carbon dioxide
  • C3 plants
  8 Citations (Scopus)

• Community recommendations on terminology and procedures used in flooding and low oxygen stress research

  Sasidharan, R., Bailey-Serres, J., Ashikari, M., Atwell, B. J., Colmer, T. D., Fagerstedt, K., Fukao, T., Geigenberger, P., Hebelstrup, K. H., Hill, R. D., Holdsworth, M. J., Ismail, A. M., Licausi, F., Mustroph, A., Nakazono, M., Pedersen, O., Perata, P., Sauter, M., Shih, M. C., Sorrell, B. K. & 6 others, Striker, G., van Dongen, J. T., Whelan, J., Xiao, S., Visser, E. J. W. & Voesenek, L. A. C. J., 9 Mar 2017, In : New Phytologist. 214, 4, p. 1403–1407

  Research output: Contribution to journal › Article
  48 Citations (Scopus)

• Comparisons of annual pasture legumes in growth, ion regulation and root porosity demonstrate that Melilotus siculus has exceptional tolerance to combinations of salinity and waterlogging

  Teakle, N. L., Bowman, S., Barrett-Lennard, E., Real, D. & Colmer, T., 2012, In : Environmental and Experimental Botany. 77, p. 175 - 184

  Research output: Contribution to journal › Article
  19 Citations (Scopus)

• Contrasting dynamics of radial O₂-loss barrier induction and aerenchyma formation in rice roots of two lengths

  Shiono, K., Ogawa, S., Yamazaki, S., Isoda, H., Fujimura, T., Nakazono, M. & Colmer, T., 2011, In : Annals of Botany. 107, p. 89-99

  Research output: Contribution to journal › Article
  86 Citations (Scopus)

• Crassulacean acid metabolism enhances underwater photosynthesis and diminishes photorespiration in the aquatic plants Isoetes australis

  Pedersen, O., Rich, S., Pulido, C., Cawthray, G. & Colmer, T., 2011, In : New Phytologist. DOI 10.1111, p. 332-339

  Research output: Contribution to journal › Article
  26 Citations (Scopus)

• Diel O2 Dynamics in Partially and Completely Submerged Deepwater Rice: Leaf Gas Films Enhance Internodal O2 Status, Influence Gene Expression and Accelerate Stem Elongation for 'Snorkelling' during Submergence

  Mori, Y., Kurokawa, Y., Koike, M., Malik, A. I., Colmer, T. D., Ashikari, M., Pedersen, O. & Nagai, K., 1 May 2019, In : Plant & Cell Physiology. 60, 5, p. 973-985 13 p.

  Research output: Contribution to journal › Article

  • submergence
  • Oryza
  • stem elongation
  • Gases
  • gases
  4 Citations (Scopus)

• Differential responses of three coastal grassland species to seawater flooding

  Hanley, M. E., Grove, T. L., Cawthray, G. R. & Colmer, T. D., 1 Apr 2017, In : Journal of Plant Ecology. 10, 2, p. 322-330

  Research output: Contribution to journal › Article

  • seawater
  • grasslands
  • grassland
  • flooding
  • Leontodon
  14 Citations (Scopus)

• Energetics of acclimation to NaCl by submerged, anoxic rice seedlings

  Kurniasih, B., Greenway, H. & Colmer, T. D., 2017, In : Annals of Botany. 119, 1, p. 129-142 14 p.

  Research output: Contribution to journal › Article

  • coleoptiles
  • acclimation
  • hypoxia
  • rice
  • seedlings
  7 Citations (Scopus)

• Enhanced formation of aerenchyma and induction of a barrier to radial oxygen loss in adventitious roots of Zea nicaraguensis contribute to its waterlogging tolerance as compared with maize (Zea mays ssp. mays)

  Abiko, T., Kotula, L., Shiono, K., Malik, A. I., Colmer, T. & Nakazono, M., 2012, In : Plant, Cell and Environment. 35, p. 1618 - 1630

  Research output: Contribution to journal › Article
  109 Citations (Scopus)

• Estimation of genetic components of variation for salt tolerance in chickpea using generation mean analysis

  Samineni, S., Gaur, P. M., Colmer, T., Krishnamurthy, L., Vadez, V. & Siddique, K., 2011, In : Euphytica. 182, p. 73-86

  Research output: Contribution to journal › Article
  4 Citations (Scopus)

• Evaluation of root porosity and radial oxygen loss of disomic addition lines of Hordeum marinum in wheat

  Konnerup, D., Malik, A. I. I., Islam, A. K. M. R. & Colmer, T. D., 2017, In : Functional Plant Biology. 44, 4, p. 400-409 10 p.

  Research output: Contribution to journal › Article

  • Hordeum marinum
  • disomics
  • porosity
  • chromosome addition
  • oxygen
  7 Citations (Scopus)

• Granular wetting agents ameliorate water repellency in turfgrass of contrasting soil organic matter content

  Barton, L. & Colmer, T., 2011, In : Plant and Soil. 348, p. 411

  Research output: Contribution to journal › Article
  15 Citations (Scopus)

• Heat stress of two tropical seagrass species during low tides - impact on underwater net photosynthesis, dark respiration and diel in situ internal aeration

  Pedersen, O., Colmer, T. D., Borum, J., Zavala-Perez, A. & Kendrick, G. A., 2016, In : New Phytologist. 210, 4, p. 1207-1218 12 p.

  Research output: Contribution to journal › Article

  • Photosynthesis
  • tides
  • Heat-Shock Response
  • aeration
  • heat stress
  55 Citations (Scopus)

• Hordeum marinum-wheat amphiploids maintain higher leaf K⁺:Na⁺ and suffer less leaf injury than wheat parents in saline conditions

  Munns, R., James, R. A., Islam, A. K. M. R. & Colmer, T., 2011, In : Plant and Soil. 348, p. 365

  Research output: Contribution to journal › Article
  24 Citations (Scopus)

• Hydraulic redistribution: limitations for plants in saline soils

  Bazihizina, N., Veneklaas, E. J., Barrett-Lennard, E. G. & Colmer, T. D., 1 Oct 2017, In : Plant Cell and Environment. 40, 10, p. 2437-2446 10 p.

  Research output: Contribution to journal › Article

  • saline soils
  • Soil
  • fluid mechanics
  • Salinity
  • Water
  3 Citations (Scopus)

• In situ O₂ dynamics in submerged Isoetes australis: varied leaf gas permeability influences underwater photosynthesis and internal O₂.

  Pedersen, O., Pulido, C., Rich, S. & Colmer, T., 2011, In : Journal of Experimental Biology. 13, p. 4691-4700

  Research output: Contribution to journal › Article

  Open Access
  29 Citations (Scopus)

• Investigating drought tolerance in chickpea using genome-wide association mapping and genomic selection based on whole-genome resequencing data

  Li, Y., Ruperao, P., Batley, J., Edwards, D., Khan, T., Colmer, T. D., Pang, J., Siddique, K. H. M. & Sutton, T., 19 Feb 2018, In : Frontiers in Plant Science. 9, 190.

  Research output: Contribution to journal › Article

  Open Access

  • marker-assisted selection
  • drought tolerance
  • single nucleotide polymorphism
  • chromosome mapping
  • genome
  30 Citations (Scopus)

• Ion transport in seminal and adventitious roots of cereals during O2 deficiency

  Colmer, T. & Greenway, H., 2011, In : Journal of Experimental Botany. 62, p. 39

  Research output: Contribution to journal › Article
  86 Citations (Scopus)

• Large number of flowers and tertiary branches, and higher reproductive success increase yields under salt stress in chickpea

  Vadez, V., Rashmi, M., Sindhu, K., Muralidharan, M., Pushpavalli, R., Turner, N., Krishnamurthy, L., Gaur, P. M. & Colmer, T., 2012, In : European Journal of Agronomy. 41, p. 42 - 51

  Research output: Contribution to journal › Article
  28 Citations (Scopus)

• Leaf gas films, underwater photosynthesis and plant species distributions in a flood gradient

  Winkel, A., Visser, E. J. W., Colmer, T., Brodersen, K. P., Voesenek, L. A. C. J., Sand-Jensen, K. & Pedersen, O., 2016, In : Plant, Cell and Environment. 39, 7, p. 1537-1548

  Research output: Contribution to journal › Article

  • Plant Dispersal
  • Photosynthesis
  • biogeography
  • Gases
  • photosynthesis
  19 Citations (Scopus)

• Leaf gas films contribute to rice (Oryza sativa) submergence tolerance during saline floods

  Herzog, M., Konnerup, D., Pedersen, O., Winkel, A. & Colmer, T. D., May 2018, In : Plant Cell and Environment. 41, 5, p. 885-897 13 p.

  Research output: Contribution to journal › Article

  • flooding tolerance
  • Oryza
  • Oryza sativa
  • Gases
  • films (materials)
  7 Citations (Scopus)

• Leaf gas films of Spartina anglica enhance rhizome and root oxygen during tidal submergence

  Winkel, A., Colmer, T. & Pedersen, O., 2011, In : Plant, Cell and Environment. 34, p. 2083-2092

  Research output: Contribution to journal › Article
  46 Citations (Scopus)

• Life at the boundary: Photosynthesis at the soil-fluid interface. A synthesis focusing on mosses

  Raven, J. & Colmer, T., 2016, In : Journal of Experimental Botany. 67, 6, p. 1613-1623

  Research output: Contribution to journal › Article

  • Bryophyta
  • Photosynthesis
  • Soil
  • mosses and liverworts
  • photosynthesis
  9 Citations (Scopus)

• Microsite and litter cover effects on seed banks vary with seed size and dispersal mechanisms: Implications for revegetation of degraded saline land

  Farrell, C., Hobbs, R. & Colmer, T., 2012, In : Plant Ecology. 213, p. 1145 - 1155

  Research output: Contribution to journal › Article
  11 Citations (Scopus)

• Microsite and litter cover effects on soil conditions and seedling recruitment in a saline agricultural system

  Farrell, C., Szota, C., Hobbs, R. & Colmer, T., 2011, In : Plant and Soil. 348, p. 397-409

  Research output: Contribution to journal › Article
  5 Citations (Scopus)

• Neglecting legumes has compromised human health and sustainable food production

  Foyer, C., Lam, H. M., Nguyen, H. T., Siddique, K., Varshney, R., Colmer, T., Cowling, W., Bramley, H., Mori, T., Hodgson, J., Cooper, J. W., Miller, A. J., Kunert, K., Vorster, J., Cullis, C., Ozga, J. A., Wahlqvist, M. L., Liang, Y., Shou, H., Shi, K. & 6 others, Yu, J., Fodor, N., Kaiser, B. N., Wong, F. L., Valliyodan, B. & Considine, M., 2 Aug 2016, In : Nature Plants. 2, 8, p. 1-10

  Research output: Contribution to journal › Article

  Open Access

  File

  • health foods
  • food production
  • human health
  • legumes
  • food security
  228 Citations (Scopus)

  780 Downloads (Pure)

• Oxygen loss from seagrass roots coincides with colonisation of sulphide-oxidising cable bacteria and reduces sulphide stress

  Martin, B. C., Bougoure, J., Ryan, M. H., Bennett, W. W., Colmer, T. D., Joyce, N. K., Olsen, Y. S. & Kendrick, G. A., 23 Oct 2018, In : ISME Journal.

  Research output: Contribution to journal › Article

  • Sulfides
  • seagrass
  • cable
  • sulfides
  • colonization
  15 Citations (Scopus)

• Pattern of solutes accumulated during leaf osmotic adjustment as related to duration of water deficit for wheat at the reproductive stage

  Nio, S. A., Cawthray, G., Wade, L. J. & Colmer, T., 2011, In : Plant Physiology and Biochemistry. 49, p. 1126-1137

  Research output: Contribution to journal › Article
  34 Citations (Scopus)

• Pattern of water use and seed yield under terminal drought in chickpea genotypes

  Pang, J., Turner, N. C., Du, Y-L., Colmer, T. D. & Siddique, K. H. M., 9 Aug 2017, In : Frontiers in Plant Science. 8, 14 p., 1375.

  Research output: Contribution to journal › Article

  Open Access
  9 Citations (Scopus)

• Phenotypic variation for productivity and drought tolerance is widespread in germplasm collections of Australian Cullen species

  Bennett, R., Colmer, T., Real, D., Renton, M. & Ryan, M., 2012, In : Crop and Pasture Science. 63, p. 656 - 671

  Research output: Contribution to journal › Article
  6 Citations (Scopus)

• Photosynthetic response to globally increasing CO2 of co-occurring temperate seagrass species

  Borum, J., Pedersen, O., Kotula, L., Fraser, M., Statton, J., Colmer, T. & Kendrick, G., Jun 2016, In : Plant, Cell and Environment. 39, 6, p. 1240-1250

  Research output: Contribution to journal › Article

  Open Access

  File

  • Photosynthesis
  • photosynthesis
  • Zosteraceae
  • Carbon
  • dissolved inorganic carbon
  27 Citations (Scopus)

  836 Downloads (Pure)

• PH regulation in anoxic rice coleoptiles at pH 3.5: Biochemical pHstats and net H + influx in the absence and presence of NO 3 -

  Greenway, H., Kulichikhin, K. Y., Cawthray, G. & Colmer, T., 2012, In : Journal of Experimental Botany. 63, 5, p. 1969 - 1983

  Research output: Contribution to journal › Article

  Open Access
  10 Citations (Scopus)

• Physical gills prevent drowning of many wetland insects, spiders and plants

  Pedersen, O. & Colmer, T., 2012, In : Journal of Experimental Biology. 215, p. 705 - 709

  Research output: Contribution to journal › Article
  31 Citations (Scopus)

• Plant growth and physiology under heterogeneous salinity

  Bazihizina, N., Barrett-Lennard, E. & Colmer, T., 2012, In : Plant and Soil. 354, 1-2, p. 1-19

  Research output: Contribution to journal › Article
  71 Citations (Scopus)

• Plant responses to heterogeneous salinity: Growth of the halophyte Atriplex nummularia is determined by the root-weighted mean salinity of the root zone

  Bazihizina, N., Barrett-Lennard, E. & Colmer, T., 2012, In : Journal of Experimental Botany. 63, p. 6347 - 6358

  Research output: Contribution to journal › Article

  Open Access
  45 Citations (Scopus)

• Prioritisation of novel pasture species for use in water-limited agriculture: A case study of Cullen in the Western Australian wheatbelt

  Bennett, R., Ryan, M., Colmer, T. & Real, D., 2011, In : Genetic Resources and Crop Evolution. 58, p. 83

  Research output: Contribution to journal › Article
  26 Citations (Scopus)

• Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

  Varshney, R. K., Thudi, M., Roorkiwal, M., He, W., Upadhyaya, H. D., Yang, W., Bajaj, P., Cubry, P., Rathore, A., Jian, J., Doddamani, D., Khan, A. W., Garg, V., Chitikineni, A., Xu, D., Gaur, P. M., Singh, N. P., Chaturvedi, S. K., Nadigatla, G. V. P. R., Krishnamurthy, L. & 20 others, Dixit, G. P., Fikre, A., Kimurto, P. K., Sreeman, S. M., Bharadwaj, C., Tripathi, S., Wang, J., Lee, S-H., Edwards, D., Polavarapu, K. K. B., Penmetsa, R. V., Crossa, J., Nguyen, H. T., Siddique, K. H. M., Colmer, T. D., Sutton, T., von Wettberg, E., Vigouroux, Y., Xu, X. & Liu, X., May 2019, In : Nature Genetics. 51, 5, p. 857-+ 11 p.

  Research output: Contribution to journal › Article

  Open Access
  41 Citations (Scopus)

• Response of chickpea (Cicer arietinum L.) to terminal drought: leaf stomatal conductance, pod abscisic acid concentration, and seed set

  Pang, J., Turner, N. C., Khan, T., Du, Y. L., Xiong, J-L., Colmer, T. D., Devilla, R., Stefanova, K. & Siddique, K. H. M., 20 Apr 2016, In : Journal of Experimental Botany. 68, 8, p. 1973-1985 13 p.

  Research output: Contribution to journal › Article

  Open Access
  40 Citations (Scopus)

• Revealing the roles of GORK channels and NADPH oxidase in acclimation to hypoxia in Arabidopsis

  Wang, F., Chen, Z. H., Liu, X., Colmer, T. D., Shabala, L., Salih, A., Zhou, M. & Shabala, S., 1 Jun 2017, In : Journal of Experimental Botany. 68, 12, p. 3191-3204 14 p.

  Research output: Contribution to journal › Article

  Open Access

  • Acclimatization
  • Arabidopsis
  • NAD(P)H oxidase (H2O2-forming)
  • NADPH Oxidases
  • hypoxia
  32 Citations (Scopus)

• Rice acclimation to soil flooding: Low concentrations of organic acids can trigger a barrier to radial oxygen loss in roots

  Colmer, T. D., Kotula, L., Malik, A. I., Takahashi, H., Konnerup, D., Nakazono, M. & Pedersen, O., 1 Jul 2019, In : Plant Cell and Environment. 42, 7, p. 2183-2197 15 p.

  Research output: Contribution to journal › Article

  • hexanoic acid
  • Acclimatization
  • Oryza
  • Soil
  • Caproates
  7 Citations (Scopus)

• Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance

  Kurokawa, Y., Nagai, K., Huan, P. D., Shimazaki, K., Qu, H., Mori, Y., Toda, Y., Kuroha, T., Hayashi, N., Aiga, S., Itoh, J. I., Yoshimura, A., Sasaki-Sekimoto, Y., Ohta, H., Shimojima, M., Malik, A. I., Pedersen, O., Colmer, T. D. & Ashikari, M., 1 Jun 2018, In : New Phytologist. 218, 4, p. 1558-1569 12 p.

  Research output: Contribution to journal › Article

  • Waxes
  • Oryza
  • Hydrophobic and Hydrophilic Interactions
  • hydrophobicity
  • waxes
  32 Citations (Scopus)

• Root aeration via aerenchymatous phellem: Three-dimensional micro-imaging and radial O 2 profiles in Melilotus siculus

  Verboven, P., Pedersen, O., Herremans, E., Ho, Q. T., Nicolaï, B. M., Colmer, T. & Teakle, N., 2012, In : New Phytologist. 193, p. 420-431

  Research output: Contribution to journal › Article
  46 Citations (Scopus)