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• Article

  Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

  Varshney, R. K., Thudi, M., Roorkiwal, M., He, W., Upadhyaya, H. D., Yang, W., Bajaj, P., Cubry, P., Rathore, A., Jian, J., Doddamani, D., Khan, A. W., Garg, V., Chitikineni, A., Xu, D., Gaur, P. M., Singh, N. P., Chaturvedi, S. K., Nadigatla, G. V. P. R., Krishnamurthy, L. & 20 others, Dixit, G. P., Fikre, A., Kimurto, P. K., Sreeman, S. M., Bharadwaj, C., Tripathi, S., Wang, J., Lee, S-H., Edwards, D., Polavarapu, K. K. B., Penmetsa, R. V., Crossa, J., Nguyen, H. T., Siddique, K. H. M., Colmer, T. D., Sutton, T., von Wettberg, E., Vigouroux, Y., Xu, X. & Liu, X., May 2019, In : Nature Genetics. 51, 5, p. 857-+ 11 p.

  Research output: Contribution to journal › Article

  Open Access
  41 Citations (Scopus)

• Response of chickpea (Cicer arietinum L.) to terminal drought: leaf stomatal conductance, pod abscisic acid concentration, and seed set

  Pang, J., Turner, N. C., Khan, T., Du, Y. L., Xiong, J-L., Colmer, T. D., Devilla, R., Stefanova, K. & Siddique, K. H. M., 20 Apr 2016, In : Journal of Experimental Botany. 68, 8, p. 1973-1985 13 p.

  Research output: Contribution to journal › Article

  Open Access
  40 Citations (Scopus)

• Responses of rice to Fe2+ in aerated and stagnant conditions: Growth, root porosity and radial oxygen loss barrier

  Mongon, J., Konnerup, D., Colmer, T. & Rerkasem, B., 2014, In : Functional Plant Biology. 41, 9, p. 922-929

  Research output: Contribution to journal › Article

  • porosity
  • root growth
  • iron
  • oxygen
  • rice
  15 Citations (Scopus)

• Revealing the roles of GORK channels and NADPH oxidase in acclimation to hypoxia in Arabidopsis

  Wang, F., Chen, Z. H., Liu, X., Colmer, T. D., Shabala, L., Salih, A., Zhou, M. & Shabala, S., 1 Jun 2017, In : Journal of Experimental Botany. 68, 12, p. 3191-3204 14 p.

  Research output: Contribution to journal › Article

  Open Access

  • Acclimatization
  • Arabidopsis
  • NAD(P)H oxidase (H2O2-forming)
  • NADPH Oxidases
  • hypoxia
  32 Citations (Scopus)

• Rice acclimation to soil flooding: Low concentrations of organic acids can trigger a barrier to radial oxygen loss in roots

  Colmer, T. D., Kotula, L., Malik, A. I., Takahashi, H., Konnerup, D., Nakazono, M. & Pedersen, O., 1 Jul 2019, In : Plant Cell and Environment. 42, 7, p. 2183-2197 15 p.

  Research output: Contribution to journal › Article

  • hexanoic acid
  • Acclimatization
  • Oryza
  • Soil
  • Caproates
  7 Citations (Scopus)

• Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance

  Kurokawa, Y., Nagai, K., Huan, P. D., Shimazaki, K., Qu, H., Mori, Y., Toda, Y., Kuroha, T., Hayashi, N., Aiga, S., Itoh, J. I., Yoshimura, A., Sasaki-Sekimoto, Y., Ohta, H., Shimojima, M., Malik, A. I., Pedersen, O., Colmer, T. D. & Ashikari, M., 1 Jun 2018, In : New Phytologist. 218, 4, p. 1558-1569 12 p.

  Research output: Contribution to journal › Article

  • Waxes
  • Oryza
  • Hydrophobic and Hydrophilic Interactions
  • hydrophobicity
  • waxes
  32 Citations (Scopus)

• Root aeration via aerenchymatous phellem: Three-dimensional micro-imaging and radial O 2 profiles in Melilotus siculus

  Verboven, P., Pedersen, O., Herremans, E., Ho, Q. T., Nicolaï, B. M., Colmer, T. & Teakle, N., 2012, In : New Phytologist. 193, p. 420-431

  Research output: Contribution to journal › Article
  46 Citations (Scopus)

• Root phenotypes of dwarf and "overgrowth" SLN1 barley mutants, and implications for hypoxic stress tolerance

  Moriconi, J., Kotula, L., Santa-Maria, G. E. & Colmer, T. D., 2019, In : Journal of Plant Physiology. 234, p. 60-70 11 p.

  Research output: Contribution to journal › Article
  2 Citations (Scopus)

• Root-zone hypoxia reduces growth of the tropical forage grass Urochloa humidicola in high-nutrient but not low-nutrient conditions

  Jiménez, J. D. L. C., Kotula, L., Veneklaas, E. J. & Colmer, T. D., 27 Nov 2019, In : Annals of Botany. 124, 6, p. 1019-1032 14 p.

  Research output: Contribution to journal › Article

  • Urochloa humidicola
  • forage grasses
  • hypoxia
  • rhizosphere
  • nutrients
  4 Citations (Scopus)

• Salinity and waterlogging tolerance amongst accessions of messina (Melilotus siculus)

  Rogers, M. E., Colmer, T., Nichols, P., Hughes, S., Frost, K., Cornwall, D., Chandra, S., Miller, S. M. & Craig, A. D., 2011, In : Crop & Pasture Science. 62, 3, p. 225-235

  Research output: Contribution to journal › Article
  27 Citations (Scopus)

• Salinity and waterlogging tolerances in three stem-succulent halophytes (Tecticornia species) from the margins of ephemeral salt lakes

  English, J. P. & Colmer, T., 2011, In : Plant and Soil. 348, p. 379-396

  Research output: Contribution to journal › Article
  14 Citations (Scopus)

• Salinity drives host reaction in Phaseolus vulgaris (common bean) to Macrophomina phaseolina

  You, M., Colmer, T. & Barbetti, M., 2011, In : Functional Plant Biology. 38, p. 984-992

  Research output: Contribution to journal › Article
  17 Citations (Scopus)

• Salinity tolerance in chickpea is associated with the ability to 'exclude' Na from leaf mesophyll cells

  Kotula, L., Clode, P. L., Jimenez, J. D. L. C. & Colmer, T. D., 24 Sep 2019, In : Journal of Experimental Botany. 70, 18, p. 4991-5002 12 p.

  Research output: Contribution to journal › Article

  Open Access

  • Mesophyll Cells
  • Cicer
  • Salt Tolerance
  • mesophyll
  • Photosynthesis
  7 Citations (Scopus)

• Salinity tolerances of three succulent halophytes (Tecticornia spp.) differentially distributed along a salinity gradient

  Moir-Barnetson, L., Veneklaas, E. & Colmer, T., 7 Jun 2016, In : Functional Plant Biology. 43, 8, p. 739-750

  Research output: Contribution to journal › Article

  • halophytes
  • salinity
  • shoots
  • Bidens
  • salt lakes
  6 Citations (Scopus)

• Salinization of the soil solution decreases the further accumulation of salt in the root zone of the halophyte Atriplex nummularia Lindl. growing above shallow saline groundwater

  Alharby, H. F., Colmer, T. D. & Barrett-Lennard, E. G., 1 Jan 2018, In : Plant Cell and Environment. 41, 1, p. 99-110 12 p.

  Research output: Contribution to journal › Article

  • Atriplex
  • Salt-Tolerant Plants
  • Atriplex nummularia
  • Groundwater
  • soil salinization
  8 Citations (Scopus)

• Salt accumulation and depletion in the root-zone of the halophyte Atriplex nummularia Lindl.: Influence of salinity, leaf area and plant water use

  Al Harby, H. F., Colmer, T. & Barrett-Lennard, E., 2014, In : Plant and Soil. 382, 1-2, p. 31-41

  Research output: Contribution to journal › Article

  • Atriplex nummularia
  • halophyte
  • leaf area
  • halophytes
  • rhizosphere
  8 Citations (Scopus)

• Salt sensitivity in chickpea is determined by sodium toxicity

  Khan, H., Siddique, K. H. M. & Colmer, T. D., 2016, In : Planta. 244, 3, p. 623-637 15 p.

  Research output: Contribution to journal › Article

  • Cicer
  • Salts
  • Sodium
  • sodium
  • salts
  14 Citations (Scopus)

• Salt sensitivity of the vegetative and reproductive stages in chickpea (Cicer arietinum L.): Podding is a particularly sensitive stage

  Samineni, S., Siddique, K., Gaur, P. M. & Colmer, T., 2011, In : Environmental and Experimental Botany. 71, p. 260-268

  Research output: Contribution to journal › Article
  54 Citations (Scopus)

• Salt Stress Delayed Flowering and Reduced Reproductive Success of Chickpea (Cicer arietinum L.), A Response Associated with Na+ Accumulation in Leaves

  Pushpavalli, R., Quealy, J., Colmer, T. D., Turner, N. C., Siddique, K. H. M., Rao, M. V. & Vadez, V., 2016, In : Journal of Agronomy and Crop Science. 202, 2, p. 125-138 14 p.

  Research output: Contribution to journal › Article

  • Cicer arietinum
  • reproductive success
  • salt stress
  • flowering
  • salinity
  19 Citations (Scopus)

• Sensitivity of chickpea and faba bean to root-zone hypoxia, elevated ethylene, and carbon dioxide

  Munir, R., Konnerup, D., Khan, H. A., Siddique, K. H. M. & Colmer, T. D., 1 Jan 2019, In : Plant Cell and Environment. 42, 1, p. 85-97 13 p.

  Research output: Contribution to journal › Article

  • Cicer
  • Vicia faba
  • ethylene
  • faba beans
  • Carbon Dioxide
  9 Citations (Scopus)

• Spectral detection of stress-related pigments in salt-lake succulent halophytic shrubs

  Marchesini, V., Guerschman, J. P., Schweiggert, R. M., Colmer, T. & Veneklaas, E., Oct 2016, In : International Journal of Applied Earth Observation and Geoinformation. 52, p. 457-463

  Research output: Contribution to journal › Article

  Open Access

  File

  • Chlorophyll
  • Pigments
  • Lakes
  • saline lake
  • pigment
  265 Downloads (Pure)

• The mechanism of improved aeration due to gas films on leaves of submerged rice

  Verboven, P., Pedersen, O., Ho, Q., Nicolaï, B. M. & Colmer, T., 2014, In : Plant, Cell and Environment. 37, 10, p. 2433-2452

  Research output: Contribution to journal › Article

  • Oryza
  • aeration
  • Gases
  • films (materials)
  • gases
  29 Citations (Scopus)

• Tissue-specific root ion profiling reveals essential roles of the CAX and ACA calcium transport systems in response to hypoxia in Arabidopsis

  Wang, F., Chen, Z-H., Liu, X., Colmer, T. D., Zhou, M. & Shabala, S., Jun 2016, In : Journal of Experimental Botany. 67, 12, p. 3747-3762 16 p.

  Research output: Contribution to journal › Article

  Open Access
  33 Citations (Scopus)

• Tolerance and recovery of the annual pasture legumes Melilotus siculus, Trifolium michelianum and Medicago polymorpha to soil salinity, soil waterlogging and the combination of these stresses

  Kotula, L., Kwa, H. Y., Nichols, P. G. H. & Colmer, T. D., 29 Aug 2019, In : Plant and Soil.

  Research output: Contribution to journal › Article

  • Melilotus siculus
  • Medicago polymorpha
  • annual pastures
  • Trifolium
  • waterlogging
  2 Citations (Scopus)

• Tolerance to partial and complete submergence in the forage legume Melilotus siculus: an evaluation of 15 accessions for petiole hyponastic response and gas-filled spaces, leaf hydrophobicity and gas films, and root phellem

  Striker, G., Kotula, L. & Colmer, T., 16 Aug 2018, In : Annals of Botany. 12 p.

  Research output: Contribution to journal › Article

  • Melilotus siculus
  • periderm
  • submergence
  • forage legumes
  • hydrophobicity
  7 Citations (Scopus)

• Transfer of the barrier to radial oxygen loss in roots of Hordeum marinum to wheat (Triticum aestivum): Evaluation of four H. marinum-wheat amphiploids

  Malik, I., Islam, A. K. M. R. & Colmer, T., 2011, In : New Phytologist. 190, p. 499

  Research output: Contribution to journal › Article

  Open Access
  43 Citations (Scopus)

• Uptake of inorganic phosphorus by the aquatic plant Isoetes australis inhabiting oligotrophic vernal rock pools

  Christiansen, N. H., Pulido, C., Pedersen, O., Colmer, T. D., Andersen, F., Jensen, H. S. & Konnerup, D., 1 Feb 2017, In : Aquatic Botany. 138, p. 64-73 10 p.

  Research output: Contribution to journal › Article

  • Isoetes
  • rock pool
  • inorganic phosphorus
  • aquatic plant
  • aquatic plants
  4 Citations (Scopus)

• Variable response of three Trifolium repens ecotypes to soil flooding by seawater

  White, A. C., Colmer, T., Cawthray, G. & Hanley, M. E., 2014, In : Annals of Botany. 114, 2, p. 347-355

  Research output: Contribution to journal › Article

  • Trifolium repens
  • ecotypes
  • seawater
  • soil
  • soil salinity
  18 Citations (Scopus)

• Vegetative and reproductive growth of salt-stressed chickpea are carbon-limited: Sucrose infusion at the reproductive stage improves salt tolerance

  Khan, H. A., Siddique, K. H. M. & Colmer, T. D., 1 Apr 2017, In : Journal of Experimental Botany. 68, 8, p. 2001-2011 11 p.

  Research output: Contribution to journal › Article

  Open Access

  • Cicer
  • Salt Tolerance
  • salt tolerance
  • Carbon
  • Sucrose
  22 Citations (Scopus)

• Visualisation by high resolution synchrotron X-ray phase contrast micro-tomography of gas films on submerged superhydrophobic leaves

  Lauridsen, T., Glavina, K., Colmer, T., Winkel, A., Irvine, S. C., Lefmann, K., Feidenhans'L, R. & Pedersen, O., 2014, In : Journal of Structural Biology. 188, 1, p. 61-70

  Research output: Contribution to journal › Article

  • Synchrotrons
  • Gases
  • X-Rays
  • Tomography
  • Wetlands
  12 Citations (Scopus)

• Waterlogging of Winter Crops at Early and Late Stages: Impacts on Leaf Physiology, Growth and Yield

  Antonella Ploschuk, R., Julio Miralles, D., Colmer, T. D., Leonardo Ploschuk, E. & Gabriel Striker, G., 20 Dec 2018, In : Frontiers in Plant Science. 9, 15 p., 1863.

  Research output: Contribution to journal › Article

  Open Access
  20 Citations (Scopus)

• Waterlogging tolerance, tissue nitrogen and oxygen transport in the forage legume Melilotus siculus: A comparison of nodulated and nitrate-fed plants

  Konnerup, D., Toro, G., Pedersen, O. & Colmer, T. D., 14 Mar 2018, In : Annals of Botany. 121, 4, p. 699-709 11 p.

  Research output: Contribution to journal › Article

  • Melilotus siculus
  • forage legumes
  • flooded conditions
  • nitrates
  • oxygen
  8 Citations (Scopus)
• Chapter

  Aerenchyma Formation in Plants

  Takahashi, H., Yamauchi, T., Colmer, T. & Nakazono, M., 2014, Low-Oxygen Stress in Plants, Oxygen Sensing and Adaptive Responses to Hypoxia. van Dongen, J. T. & Licausi, F. (eds.). 1 ed. United States: Springer, Vol. 21. p. 247 - 265 (Plant Cell Monographs).

  Research output: Chapter in Book/Conference paper › Chapter
  32 Citations (Scopus)

• Carbon And Water Relations

  Lambers, H., Colmer, T., Hassiotou, F., Mitchell, P. M., Poot, P., Shane, M. & Veneklaas, E., 2014, Plant Life on the Sandplains in Southwest Australia A Global Biodiversity Hotspot. Lambers, H. (ed.). 1 ed. Australia: UWA Publishing, p. 129 - 146

  Research output: Chapter in Book/Conference paper › Chapter

• Physiological Adaptations to Wetland Habitats

  Armstrong, W. & Colmer, T. D., 5 Dec 2016, The Wetland Book: I: Structure and Function, Management and Methods. Finlayson, C. M., Everard, M., Irvine, K., McInnes, R. J., Middleton, B. A., van Dam, A. A. & Davidson, N. C. (eds.). Netherlands: Springer, p. 383-79 Chapter 79-2. (Living Reference Work).

  Research output: Chapter in Book/Conference paper › Chapter

• Underwater Photosynthesis and Internal Aeration of Submerged Terrestrial Wetland Plants

  Pedersen, O. & Colmer, T., 2014, Low-Oxygen Stress in Plants, Oxygen Sensing and Adaptive Responses to Hypoxia. van Dongen, J. T. & Licausi, F. (eds.). 1 ed. United States: Springer, Vol. 21. p. 315 - 327 (Plant Cell Monographs).

  Research output: Chapter in Book/Conference paper › Chapter
  1 Citation (Scopus)
• Comment/debate

  Regulation of root traits for internal aeration and tolerance to soil waterlogging-flooding stress

  Yamauchi, T., Colmer, T. D., Pedersen, O. & Nakazono, M., 1 Feb 2018, In : Plant Physiology. 176, 2, p. 1118-1130 13 p.

  Research output: Contribution to journal › Comment/debate
  77 Citations (Scopus)
• Conference article

  Energy costs of salinity tolerance in crop plants

  Tyerman, S. D., Munns, R., Fricke, W., Arsova, B., Barkla, B. J., Bose, J., Bramley, H., Byrt, C., Chen, Z., Colmer, T. D., Cuin, T., Day, D. A., Foster, KJ., Gilliham, M., Henderson, S. W., Horie, T., Jenkins, C. L. D., Kaiser, B. N., Katsuhara, M., Plett, D. & 12 others, Miklavcic, S. J., Roy, S. J., Rubio, F., Shabala, S., Shelden, M., Soole, K., Taylor, N. L., Tester, M., Watt, M., Wege, S., Wegner, L. H. & Wen, Z., 1 Jan 2019, In : New Phytologist. 221, 1, p. 25-29 5 p.

  Research output: Contribution to journal › Conference article

  Open Access
  19 Citations (Scopus)

  2 Downloads (Pure)
• Conference paper

  Turfgrass education, research and information in Australia: History, development and implications

  Loch, D. S., Aldous, D. E., McMaugh, P. E., Colmer, T. D., Martin, P. M., Ford, P. G., Neylan, J. J., Burrup, D. H. & Dempsey, F. L., 8 Oct 2016, Acta Horticulturae: Proceedings of the III International Conference on Turfgrass Management and Science for Sports Fields. Nektarios, P. A. & McAuliffe, K. W. (eds.). International Society for Horticultural Science, Vol. 1122. p. 9-17 9 p. (Acta Horticulturae; vol. 1122).

  Research output: Chapter in Book/Conference paper › Conference paper

  • educational research
  • turf grasses
  • history
  • industry
  • education
• Letter

  Plant tolerance of flooding stress - recent advances

  Bailey-Serres, J. N. & Colmer, T., 2014, In : Plant, Cell and Environment. 37, 10, p. 2211-2215

  Research output: Contribution to journal › Letter
  54 Citations (Scopus)
• Review article

  A Review of Warm-Season Turfgrass Evapotranspiration, Responses to Deficit Irrigation, and Drought Resistance

  Colmer, T. & Barton, L., 27 Mar 2017, In : Crop Science. 57, p. S98-S110

  Research output: Contribution to journal › Review article

  • deficit irrigation
  • turf grasses
  • warm season
  • evapotranspiration
  • drought tolerance
  11 Citations (Scopus)

• Flooding tolerance of forage legumes

  Striker, G. G. & Colmer, T. D., 1 Apr 2017, In : Journal of Experimental Botany. 68, 8, p. 1851-1872

  Research output: Contribution to journal › Review article

  • Trifolium
  • Medicago sativa
  • Chlorophyll
  • Nitrogen Fixation
  • Photosynthesis
  43 Citations (Scopus)

• Friend or Foe? Chloride Patterning in Halophytes

  Bazihizina, N., Colmer, T. D., Cuin, T. A., Mancuso, S. & Shabala, S., Feb 2019, In : Trends in Plant Science. 24, 2, p. 142-151 10 p.

  Research output: Contribution to journal › Review article

  Open Access
  13 Citations (Scopus)

• Mechanisms of waterlogging tolerance in wheat - a review of root and shoot physiology

  Herzog, M., Striker, G. G., Colmer, T. D. & Pedersen, O., May 2016, In : Plant, Cell and Environment. 39, 5, p. 1068-1086

  Research output: Contribution to journal › Review article

  • Triticum
  • flooded conditions
  • physiology
  • wheat
  • shoots
  83 Citations (Scopus)

• Tissue tolerance: an essential but elusive trait for salt-tolerant crops

  Munns, R., James, R. A., Gilliham, M., Flowers, T. J. & Colmer, T. D., 12 Oct 2016, In : Functional Plant Biology. 43, 12, p. 1103-1113 11 p.

  Research output: Contribution to journal › Review article

  Open Access

  File

  • salts
  • crops
  • tissues
  • ions
  • genetic variation
  72 Citations (Scopus)

  405 Downloads (Pure)

• Tolerance of roots to low oxygen: ‘Anoxic’ cores, the phytoglobin-nitric oxide cycle, and energy or oxygen sensing

  Armstrong, W., Beckett, P. M., Colmer, T. D., Setter, T. L. & Greenway, H., 1 Aug 2019, In : Journal of Plant Physiology. 239, p. 92-108 17 p.

  Research output: Contribution to journal › Review article

  • nitric oxide
  • Nitric Oxide
  • Oxygen
  • oxygen
  • hypoxia
  10 Citations (Scopus)