Find Research Outputs

Search results

• 2019

  Diel O2 Dynamics in Partially and Completely Submerged Deepwater Rice: Leaf Gas Films Enhance Internodal O2 Status, Influence Gene Expression and Accelerate Stem Elongation for 'Snorkelling' during Submergence

  Mori, Y., Kurokawa, Y., Koike, M., Malik, A. I., Colmer, T. D., Ashikari, M., Pedersen, O. & Nagai, K., 1 May 2019, In : Plant & Cell Physiology. 60, 5, p. 973-985 13 p.

  Research output: Contribution to journal › Article

  • submergence
  • Oryza
  • stem elongation
  • Gases
  • gases
  4 Citations (Scopus)

• Energy costs of salinity tolerance in crop plants

  Tyerman, S. D., Munns, R., Fricke, W., Arsova, B., Barkla, B. J., Bose, J., Bramley, H., Byrt, C., Chen, Z., Colmer, T. D., Cuin, T., Day, D. A., Foster, KJ., Gilliham, M., Henderson, S. W., Horie, T., Jenkins, C. L. D., Kaiser, B. N., Katsuhara, M., Plett, D. & 12 others, Miklavcic, S. J., Roy, S. J., Rubio, F., Shabala, S., Shelden, M., Soole, K., Taylor, N. L., Tester, M., Watt, M., Wege, S., Wegner, L. H. & Wen, Z., 1 Jan 2019, In : New Phytologist. 221, 1, p. 25-29 5 p.

  Research output: Contribution to journal › Conference article

  Open Access
  18 Citations (Scopus)

  2 Downloads (Pure)

• Friend or Foe? Chloride Patterning in Halophytes

  Bazihizina, N., Colmer, T. D., Cuin, T. A., Mancuso, S. & Shabala, S., Feb 2019, In : Trends in Plant Science. 24, 2, p. 142-151 10 p.

  Research output: Contribution to journal › Review article

  Open Access
  13 Citations (Scopus)

• Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

  Varshney, R. K., Thudi, M., Roorkiwal, M., He, W., Upadhyaya, H. D., Yang, W., Bajaj, P., Cubry, P., Rathore, A., Jian, J., Doddamani, D., Khan, A. W., Garg, V., Chitikineni, A., Xu, D., Gaur, P. M., Singh, N. P., Chaturvedi, S. K., Nadigatla, G. V. P. R., Krishnamurthy, L. & 20 others, Dixit, G. P., Fikre, A., Kimurto, P. K., Sreeman, S. M., Bharadwaj, C., Tripathi, S., Wang, J., Lee, S-H., Edwards, D., Polavarapu, K. K. B., Penmetsa, R. V., Crossa, J., Nguyen, H. T., Siddique, K. H. M., Colmer, T. D., Sutton, T., von Wettberg, E., Vigouroux, Y., Xu, X. & Liu, X., May 2019, In : Nature Genetics. 51, 5, p. 857-+ 11 p.

  Research output: Contribution to journal › Article

  Open Access
  36 Citations (Scopus)

• Rice acclimation to soil flooding: Low concentrations of organic acids can trigger a barrier to radial oxygen loss in roots

  Colmer, T. D., Kotula, L., Malik, A. I., Takahashi, H., Konnerup, D., Nakazono, M. & Pedersen, O., 1 Jul 2019, In : Plant Cell and Environment. 42, 7, p. 2183-2197 15 p.

  Research output: Contribution to journal › Article

  • hexanoic acid
  • Acclimatization
  • Oryza
  • Soil
  • Caproates
  6 Citations (Scopus)

• Root phenotypes of dwarf and "overgrowth" SLN1 barley mutants, and implications for hypoxic stress tolerance

  Moriconi, J., Kotula, L., Santa-Maria, G. E. & Colmer, T. D., 2019, In : Journal of Plant Physiology. 234, p. 60-70 11 p.

  Research output: Contribution to journal › Article
  2 Citations (Scopus)

• Root-zone hypoxia reduces growth of the tropical forage grass Urochloa humidicola in high-nutrient but not low-nutrient conditions

  Jiménez, J. D. L. C., Kotula, L., Veneklaas, E. J. & Colmer, T. D., 27 Nov 2019, In : Annals of Botany. 124, 6, p. 1019-1032 14 p.

  Research output: Contribution to journal › Article

  • Urochloa humidicola
  • forage grasses
  • hypoxia
  • rhizosphere
  • nutrients
  4 Citations (Scopus)

• Salinity tolerance in chickpea is associated with the ability to 'exclude' Na from leaf mesophyll cells

  Kotula, L., Clode, P. L., Jimenez, J. D. L. C. & Colmer, T. D., 24 Sep 2019, In : Journal of Experimental Botany. 70, 18, p. 4991-5002 12 p.

  Research output: Contribution to journal › Article

  Open Access

  • Mesophyll Cells
  • Cicer
  • Salt Tolerance
  • mesophyll
  • Photosynthesis
  7 Citations (Scopus)

• Sensitivity of chickpea and faba bean to root-zone hypoxia, elevated ethylene, and carbon dioxide

  Munir, R., Konnerup, D., Khan, H. A., Siddique, K. H. M. & Colmer, T. D., 1 Jan 2019, In : Plant Cell and Environment. 42, 1, p. 85-97 13 p.

  Research output: Contribution to journal › Article

  • Cicer
  • Vicia faba
  • ethylene
  • faba beans
  • Carbon Dioxide
  8 Citations (Scopus)

• Tolerance and recovery of the annual pasture legumes Melilotus siculus, Trifolium michelianum and Medicago polymorpha to soil salinity, soil waterlogging and the combination of these stresses

  Kotula, L., Kwa, H. Y., Nichols, P. G. H. & Colmer, T. D., 29 Aug 2019, In : Plant and Soil.

  Research output: Contribution to journal › Article

  • Melilotus siculus
  • Medicago polymorpha
  • annual pastures
  • Trifolium
  • waterlogging
  1 Citation (Scopus)

• Tolerance of roots to low oxygen: ‘Anoxic’ cores, the phytoglobin-nitric oxide cycle, and energy or oxygen sensing

  Armstrong, W., Beckett, P. M., Colmer, T. D., Setter, T. L. & Greenway, H., 1 Aug 2019, In : Journal of Plant Physiology. 239, p. 92-108 17 p.

  Research output: Contribution to journal › Review article

  • nitric oxide
  • Nitric Oxide
  • Oxygen
  • oxygen
  • hypoxia
  10 Citations (Scopus)
• 2018

  CO2 and O2 dynamics in leaves of aquatic plants with C3 or CAM photosynthesis - application of a novel CO2 microsensor

  Pedersen, O., Colmer, T. D., Garcia-Robledo, E. & Revsbech, N. P., 24 Sep 2018, In : Annals of Botany. 122, 4, p. 605-615 11 p.

  Research output: Contribution to journal › Article

  • Crassulacean acid metabolism
  • aquatic plants
  • photosynthesis
  • carbon dioxide
  • C3 plants
  8 Citations (Scopus)

• Investigating drought tolerance in chickpea using genome-wide association mapping and genomic selection based on whole-genome resequencing data

  Li, Y., Ruperao, P., Batley, J., Edwards, D., Khan, T., Colmer, T. D., Pang, J., Siddique, K. H. M. & Sutton, T., 19 Feb 2018, In : Frontiers in Plant Science. 9, 190.

  Research output: Contribution to journal › Article

  Open Access

  • marker-assisted selection
  • drought tolerance
  • single nucleotide polymorphism
  • chromosome mapping
  • genome
  29 Citations (Scopus)

• Leaf gas films contribute to rice (Oryza sativa) submergence tolerance during saline floods

  Herzog, M., Konnerup, D., Pedersen, O., Winkel, A. & Colmer, T. D., May 2018, In : Plant Cell and Environment. 41, 5, p. 885-897 13 p.

  Research output: Contribution to journal › Article

  • flooding tolerance
  • Oryza
  • Oryza sativa
  • Gases
  • films (materials)
  7 Citations (Scopus)

• Oxygen loss from seagrass roots coincides with colonisation of sulphide-oxidising cable bacteria and reduces sulphide stress

  Martin, B. C., Bougoure, J., Ryan, M. H., Bennett, W. W., Colmer, T. D., Joyce, N. K., Olsen, Y. S. & Kendrick, G. A., 23 Oct 2018, In : ISME Journal.

  Research output: Contribution to journal › Article

  • Sulfides
  • seagrass
  • cable
  • sulfides
  • colonization
  14 Citations (Scopus)

• Regulation of root traits for internal aeration and tolerance to soil waterlogging-flooding stress

  Yamauchi, T., Colmer, T. D., Pedersen, O. & Nakazono, M., 1 Feb 2018, In : Plant Physiology. 176, 2, p. 1118-1130 13 p.

  Research output: Contribution to journal › Comment/debate
  76 Citations (Scopus)

• Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance

  Kurokawa, Y., Nagai, K., Huan, P. D., Shimazaki, K., Qu, H., Mori, Y., Toda, Y., Kuroha, T., Hayashi, N., Aiga, S., Itoh, J. I., Yoshimura, A., Sasaki-Sekimoto, Y., Ohta, H., Shimojima, M., Malik, A. I., Pedersen, O., Colmer, T. D. & Ashikari, M., 1 Jun 2018, In : New Phytologist. 218, 4, p. 1558-1569 12 p.

  Research output: Contribution to journal › Article

  • Waxes
  • Oryza
  • Hydrophobic and Hydrophilic Interactions
  • hydrophobicity
  • waxes
  30 Citations (Scopus)

• Salinization of the soil solution decreases the further accumulation of salt in the root zone of the halophyte Atriplex nummularia Lindl. growing above shallow saline groundwater

  Alharby, H. F., Colmer, T. D. & Barrett-Lennard, E. G., 1 Jan 2018, In : Plant Cell and Environment. 41, 1, p. 99-110 12 p.

  Research output: Contribution to journal › Article

  • Atriplex
  • Salt-Tolerant Plants
  • Atriplex nummularia
  • Groundwater
  • soil salinization
  8 Citations (Scopus)

• Tolerance to partial and complete submergence in the forage legume Melilotus siculus: an evaluation of 15 accessions for petiole hyponastic response and gas-filled spaces, leaf hydrophobicity and gas films, and root phellem

  Striker, G., Kotula, L. & Colmer, T., 16 Aug 2018, In : Annals of Botany. 12 p.

  Research output: Contribution to journal › Article

  • Melilotus siculus
  • periderm
  • submergence
  • forage legumes
  • hydrophobicity
  7 Citations (Scopus)

• Waterlogging of Winter Crops at Early and Late Stages: Impacts on Leaf Physiology, Growth and Yield

  Antonella Ploschuk, R., Julio Miralles, D., Colmer, T. D., Leonardo Ploschuk, E. & Gabriel Striker, G., 20 Dec 2018, In : Frontiers in Plant Science. 9, 15 p., 1863.

  Research output: Contribution to journal › Article

  Open Access
  19 Citations (Scopus)

• Waterlogging tolerance, tissue nitrogen and oxygen transport in the forage legume Melilotus siculus: A comparison of nodulated and nitrate-fed plants

  Konnerup, D., Toro, G., Pedersen, O. & Colmer, T. D., 14 Mar 2018, In : Annals of Botany. 121, 4, p. 699-709 11 p.

  Research output: Contribution to journal › Article

  • Melilotus siculus
  • forage legumes
  • flooded conditions
  • nitrates
  • oxygen
  8 Citations (Scopus)
• 2017

  A major locus involved in the formation of the radial oxygen loss barrier in adventitious roots of teosinte Zea nicaraguensis is located on the short-arm of chromosome 3

  Watanabe, K., Takahashi, H., Sato, S., Nishiuchi, S., Omori, F., Malik, A. I., Colmer, T. D., Mano, Y. & Nakazono, M., 1 Feb 2017, In : Plant Cell and Environment. 40, 2, p. 304-316 13 p.

  Research output: Contribution to journal › Article

  • Zea nicaraguensis
  • Chromosomes, Human, Pair 3
  • Zea
  • Zea mays
  • adventitious roots
  18 Citations (Scopus)

• Anatomical and biochemical characterisation of a barrier to radial O2 loss in adventitious roots of two contrasting Hordeum marinum accessions

  Kotula, L., Schreiber, L., Colmer, T. D. & Nakazono, M., 2017, In : Functional Plant Biology. 44, 9, p. 845-857

  Research output: Contribution to journal › Article

  • Hordeum marinum
  • adventitious roots
  • flooded conditions
  • suberization
  • suberin
  17 Citations (Scopus)

• A Review of Warm-Season Turfgrass Evapotranspiration, Responses to Deficit Irrigation, and Drought Resistance

  Colmer, T. & Barton, L., 27 Mar 2017, In : Crop Science. 57, p. S98-S110

  Research output: Contribution to journal › Review article

  • deficit irrigation
  • turf grasses
  • warm season
  • evapotranspiration
  • drought tolerance
  11 Citations (Scopus)

• Community recommendations on terminology and procedures used in flooding and low oxygen stress research

  Sasidharan, R., Bailey-Serres, J., Ashikari, M., Atwell, B. J., Colmer, T. D., Fagerstedt, K., Fukao, T., Geigenberger, P., Hebelstrup, K. H., Hill, R. D., Holdsworth, M. J., Ismail, A. M., Licausi, F., Mustroph, A., Nakazono, M., Pedersen, O., Perata, P., Sauter, M., Shih, M. C., Sorrell, B. K. & 6 others, Striker, G., van Dongen, J. T., Whelan, J., Xiao, S., Visser, E. J. W. & Voesenek, L. A. C. J., 9 Mar 2017, In : New Phytologist. 214, 4, p. 1403–1407

  Research output: Contribution to journal › Article
  48 Citations (Scopus)

• Differential responses of three coastal grassland species to seawater flooding

  Hanley, M. E., Grove, T. L., Cawthray, G. R. & Colmer, T. D., 1 Apr 2017, In : Journal of Plant Ecology. 10, 2, p. 322-330

  Research output: Contribution to journal › Article

  • seawater
  • grasslands
  • grassland
  • flooding
  • Leontodon
  14 Citations (Scopus)

• Energetics of acclimation to NaCl by submerged, anoxic rice seedlings

  Kurniasih, B., Greenway, H. & Colmer, T. D., 2017, In : Annals of Botany. 119, 1, p. 129-142 14 p.

  Research output: Contribution to journal › Article

  • coleoptiles
  • acclimation
  • hypoxia
  • rice
  • seedlings
  7 Citations (Scopus)

• Evaluation of root porosity and radial oxygen loss of disomic addition lines of Hordeum marinum in wheat

  Konnerup, D., Malik, A. I. I., Islam, A. K. M. R. & Colmer, T. D., 2017, In : Functional Plant Biology. 44, 4, p. 400-409 10 p.

  Research output: Contribution to journal › Article

  • Hordeum marinum
  • disomics
  • porosity
  • chromosome addition
  • oxygen
  7 Citations (Scopus)

• Flooding tolerance of forage legumes

  Striker, G. G. & Colmer, T. D., 1 Apr 2017, In : Journal of Experimental Botany. 68, 8, p. 1851-1872

  Research output: Contribution to journal › Review article

  • Trifolium
  • Medicago sativa
  • Chlorophyll
  • Nitrogen Fixation
  • Photosynthesis
  42 Citations (Scopus)

• Hydraulic redistribution: limitations for plants in saline soils

  Bazihizina, N., Veneklaas, E. J., Barrett-Lennard, E. G. & Colmer, T. D., 1 Oct 2017, In : Plant Cell and Environment. 40, 10, p. 2437-2446 10 p.

  Research output: Contribution to journal › Article

  • saline soils
  • Soil
  • fluid mechanics
  • Salinity
  • Water
  3 Citations (Scopus)

• Pattern of water use and seed yield under terminal drought in chickpea genotypes

  Pang, J., Turner, N. C., Du, Y-L., Colmer, T. D. & Siddique, K. H. M., 9 Aug 2017, In : Frontiers in Plant Science. 8, 14 p., 1375.

  Research output: Contribution to journal › Article

  Open Access
  8 Citations (Scopus)

• Revealing the roles of GORK channels and NADPH oxidase in acclimation to hypoxia in Arabidopsis

  Wang, F., Chen, Z. H., Liu, X., Colmer, T. D., Shabala, L., Salih, A., Zhou, M. & Shabala, S., 1 Jun 2017, In : Journal of Experimental Botany. 68, 12, p. 3191-3204 14 p.

  Research output: Contribution to journal › Article

  Open Access

  • Acclimatization
  • Arabidopsis
  • NAD(P)H oxidase (H2O2-forming)
  • NADPH Oxidases
  • hypoxia
  32 Citations (Scopus)

• Uptake of inorganic phosphorus by the aquatic plant Isoetes australis inhabiting oligotrophic vernal rock pools

  Christiansen, N. H., Pulido, C., Pedersen, O., Colmer, T. D., Andersen, F., Jensen, H. S. & Konnerup, D., 1 Feb 2017, In : Aquatic Botany. 138, p. 64-73 10 p.

  Research output: Contribution to journal › Article

  • Isoetes
  • rock pool
  • inorganic phosphorus
  • aquatic plant
  • aquatic plants
  4 Citations (Scopus)

• Vegetative and reproductive growth of salt-stressed chickpea are carbon-limited: Sucrose infusion at the reproductive stage improves salt tolerance

  Khan, H. A., Siddique, K. H. M. & Colmer, T. D., 1 Apr 2017, In : Journal of Experimental Botany. 68, 8, p. 2001-2011 11 p.

  Research output: Contribution to journal › Article

  Open Access

  • Cicer
  • Salt Tolerance
  • salt tolerance
  • Carbon
  • Sucrose
  22 Citations (Scopus)
• 2014

  Aerenchyma Formation in Plants

  Takahashi, H., Yamauchi, T., Colmer, T. & Nakazono, M., 2014, Low-Oxygen Stress in Plants, Oxygen Sensing and Adaptive Responses to Hypoxia. van Dongen, J. T. & Licausi, F. (eds.). 1 ed. United States: Springer, Vol. 21. p. 247 - 265 (Plant Cell Monographs).

  Research output: Chapter in Book/Conference paper › Chapter
  32 Citations (Scopus)

• Carbon And Water Relations

  Lambers, H., Colmer, T., Hassiotou, F., Mitchell, P. M., Poot, P., Shane, M. & Veneklaas, E., 2014, Plant Life on the Sandplains in Southwest Australia A Global Biodiversity Hotspot. Lambers, H. (ed.). 1 ed. Australia: UWA Publishing, p. 129 - 146

  Research output: Chapter in Book/Conference paper › Chapter

• Characterization of the multigene family TaHKT 2;1 in bread wheat and the role of gene members in plant Na+ and K+ status

  Ariyarathna, H. C. K., Ul Haq, T., Colmer, T. & Francki, M. G., 2014, In : BMC Plant Biology. 14, 1, p. 15pp

  Research output: Contribution to journal › Article

  Open Access

  • multigene family
  • wheat
  • aneuploidy
  • genes
  • pseudogenes
  10 Citations (Scopus)

• Drought tolerances of three stem-succulent halophyte species of an inland semiarid salt lake system

  Marchesini, V., Yin, C., Colmer, T. & Veneklaas, E., Nov 2014, In : Functional Plant Biology. 41, 12, p. 1230-1238 9 p.

  Research output: Contribution to journal › Article

  • salt lakes
  • halophytes
  • drought tolerance
  • drought
  • shoots
  6 Citations (Scopus)

• Effects of organic acids on the formation of the barrier to radial oxygen loss in roots of hordeum marinum

  Kotula, L., Colmer, T. & Nakazono, M., 2014, In : Functional Plant Biology. 41, 2, p. 187-202

  Research output: Contribution to journal › Article

  • Hordeum marinum
  • hexanoic acid
  • organic acids and salts
  • oxygen
  • butyric acid
  16 Citations (Scopus)

• Gas film retention and underwater photosynthesis during field submergence of four contrasting rice genotypes

  Winkel, A., Pedersen, O., Ella, E. S., Ismail, A. M. & Colmer, T., 2014, In : Journal of Experimental Botany. 65, 12, p. 3225-3233

  Research output: Contribution to journal › Article

  Open Access

  • Photosynthesis
  • submergence
  • Oryza
  • Gases
  • photosynthesis
  41 Citations (Scopus)

• Linking oxygen availability with membrane potential maintenance and K+ retention of barley roots: Implications for waterlogging stress tolerance

  Zeng, F., Konnerup, D., Shabala, L., Zhou, M., Colmer, T., Zhang, G. & Shabala, S. N., 18 Aug 2014, In : Plant, Cell and Environment. 37, 10, p. 2325-2338 14 p.

  Research output: Contribution to journal › Article

  • Hordeum
  • flooded conditions
  • membrane potential
  • Membrane Potentials
  • stress tolerance
  31 Citations (Scopus)

• Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa)

  Shiono, K., Yamauchi, T., Yamazaki, S., Mohanty, B., Malik, I., Nagamura, Y., Nishizawa, N., Tsutsumi, N., Colmer, T. & Nakazono, M., 2014, In : Journal of Experimental Botany. 65, 17, p. 4795-4806

  Research output: Contribution to journal › Article

  • suberin
  • Oryza
  • microarray technology
  • Microarray Analysis
  • lasers
  34 Citations (Scopus)

• Plant tolerance of flooding stress - recent advances

  Bailey-Serres, J. N. & Colmer, T., 2014, In : Plant, Cell and Environment. 37, 10, p. 2211-2215

  Research output: Contribution to journal › Letter
  53 Citations (Scopus)

• Responses of rice to Fe2+ in aerated and stagnant conditions: Growth, root porosity and radial oxygen loss barrier

  Mongon, J., Konnerup, D., Colmer, T. & Rerkasem, B., 2014, In : Functional Plant Biology. 41, 9, p. 922-929

  Research output: Contribution to journal › Article

  • porosity
  • root growth
  • iron
  • oxygen
  • rice
  15 Citations (Scopus)

• Salt accumulation and depletion in the root-zone of the halophyte Atriplex nummularia Lindl.: Influence of salinity, leaf area and plant water use

  Al Harby, H. F., Colmer, T. & Barrett-Lennard, E., 2014, In : Plant and Soil. 382, 1-2, p. 31-41

  Research output: Contribution to journal › Article

  • Atriplex nummularia
  • halophyte
  • leaf area
  • halophytes
  • rhizosphere
  8 Citations (Scopus)

• The mechanism of improved aeration due to gas films on leaves of submerged rice

  Verboven, P., Pedersen, O., Ho, Q., Nicolaï, B. M. & Colmer, T., 2014, In : Plant, Cell and Environment. 37, 10, p. 2433-2452

  Research output: Contribution to journal › Article

  • Oryza
  • aeration
  • Gases
  • films (materials)
  • gases
  28 Citations (Scopus)

• Underwater Photosynthesis and Internal Aeration of Submerged Terrestrial Wetland Plants

  Pedersen, O. & Colmer, T., 2014, Low-Oxygen Stress in Plants, Oxygen Sensing and Adaptive Responses to Hypoxia. van Dongen, J. T. & Licausi, F. (eds.). 1 ed. United States: Springer, Vol. 21. p. 315 - 327 (Plant Cell Monographs).

  Research output: Chapter in Book/Conference paper › Chapter
  1 Citation (Scopus)

• Variable response of three Trifolium repens ecotypes to soil flooding by seawater

  White, A. C., Colmer, T., Cawthray, G. & Hanley, M. E., 2014, In : Annals of Botany. 114, 2, p. 347-355

  Research output: Contribution to journal › Article

  • Trifolium repens
  • ecotypes
  • seawater
  • soil
  • soil salinity
  18 Citations (Scopus)

• Visualisation by high resolution synchrotron X-ray phase contrast micro-tomography of gas films on submerged superhydrophobic leaves

  Lauridsen, T., Glavina, K., Colmer, T., Winkel, A., Irvine, S. C., Lefmann, K., Feidenhans'L, R. & Pedersen, O., 2014, In : Journal of Structural Biology. 188, 1, p. 61-70

  Research output: Contribution to journal › Article

  • Synchrotrons
  • Gases
  • X-Rays
  • Tomography
  • Wetlands
  12 Citations (Scopus)
• 2012

  A GmAOX2b antisense gene compromises vegetative growth and seed production in soybean

  Chai, T-T., Simmonds, D., Day, D. A., Colmer, T. & Finnegan, P., 2012, In : Planta. 236, p. 199 - 207

  Research output: Contribution to journal › Article
  12 Citations (Scopus)