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• 2020

  Disease Pandemics and Major Epidemics Arising from New Encounters between Indigenous Viruses and Introduced Crops

  Jones, R. A. C., 4 Dec 2020, In : Viruses. 12, 24 p., 1388.

  Research output: Contribution to journal › Review article

  Open Access

  • Pandemics
  • Epidemics
  • Viruses
  • Virus Diseases
  • Food Supply

• Epidemiology of Zucchini yellow mosaic virus in cucurbit crops in a remote tropical environment

  Clarke, R., Webster, C. G., Kehoe, M. A., Coutts, B. A., Broughton, S., Warmington, M. & Jones, R. A. C., 1 May 2020, In : Virus Research. 281, 197897.

  Research output: Contribution to journal › Article

  • Zucchini yellow mosaic virus
  • Epidemiology
  • Aphids
  • Rivers
  • Cucurbitaceae
  2 Citations (Scopus)

• Genetic Diversity of Nine Non-Recombinant Potato virus Y Isolates From Three Biological Strain Groups: Historical and Geographical Insights

  Green, K. J., Quintero-Ferrer, A., Chikh-Ali, M., Jones, R. A. C. & Karasev, A. V., 1 Sep 2020, In : Plant Disease. 104, 9, p. 2317-2323 7 p.

  Research output: Contribution to journal › Article

  • Potato virus Y
  • genetic variation
  • potatoes
  • Solanum
  • monoclonal antibodies
  3 Citations (Scopus)

• Historical virus isolate collections: An invaluable resource connecting plant virology’s pre-sequencing and post-sequencing eras

  Jones, R. A. C., Boonham, N., Adams, I. P. & Fox, A., 10 Nov 2020, In : Plant Pathology. 14 p.

  Research output: Contribution to journal › Article

  • Viruses
  • viruses
  • Plant Viruses
  • linkage (genetics)
  • plant collections

• Host plant affiliations of aphid vector species found in a remote tropical environment

  Clarke, R., Kehoe, M. A., Broughton, S. & Jones, R. A. C., May 2020, In : Virus Research. 281, 197934.

  Research output: Contribution to journal › Article

  • Aphids
  • Santalum
  • Rivers
  • Ecology
  1 Citation (Scopus)

• The Potyviruses: An Evolutionary Synthesis Is Emerging

  Gibbs, A. J., Hajizadeh, M., Ohshima, K. & Jones, R. A. C., 22 Jan 2020, In : Viruses. 12, 2

  Research output: Contribution to journal › Review article

  Open Access

  • Potyvirus
  • Aphids
  • Potyvirus HC-Pro protein
  • Capsid Proteins
  • Turnip mosaic virus
  11 Citations (Scopus)

• Zucchini yellow mosaic virus disease of cucurbits in a tropical environment: Aphid vectors, alternate hosts, and epidemic drivers

  Jones, R. A. C., Oct 2020, In : Virus Research. 108, 10, p. 119-119 1 p.

  Research output: Contribution to journal › Abstract/Meeting Abstract
• 2019

  Biological and Molecular Properties of Wild potato mosaic virus Isolates from Pepino (Solanum muricatum)

  Fribourg, C. E., Gibbs, A. J., Adams, I. P., Boonham, N. & Jones, R. A. C., 1 Jul 2019, In : Plant Disease. 103, 7, p. 1746-1756 11 p.

  Research output: Contribution to journal › Article

  • Wild potato mosaic virus
  • Solanum muricatum
  • Potato virus V
  • valleys
  • viruses
  4 Citations (Scopus)

• Complete coding sequence of Andean potato mottle virus from a 40-year-old sample from Peru

  Adams, I. P., Fribourg, C., Fox, A., Boonham, N. & Jones, R. A. C., 3 Oct 2019, In : Microbiology Resource Announcements. 8, 40, e00871-19.

  Research output: Contribution to journal › Article

  Open Access

  • Andean potato mottle virus
  • RNA I
  • Peru
  • Brazil
  • Nucleotides
  1 Citation (Scopus)

• Effects of a Potato Spindle Tuber Viroid Tomato Strain on the Symptoms, Biomass, and Yields of Classical Indicator and Currently Grown Potato and Tomato Cultivars

  Mackie, A. E., Barbetti, M. J., Rodoni, B., McKirdy, S. & Jones, R. A. C., 1 Dec 2019, In : Plant Disease. 103, 12, p. 3009-3017 9 p.

  Research output: Contribution to journal › Article

  • Potato spindle tuber viroid
  • signs and symptoms (plants)
  • potatoes
  • tomatoes
  • biomass
  3 Citations (Scopus)

• Genetic Connectivity Between Papaya Ringspot Virus Genomes from Papua New Guinea and Northern Australia, and New Recombination Insights

  Maina, S., Barbetti, M. J., Edwards, O. R., Minemba, D., Areke, M. W. & Jones, R. A. C., Apr 2019, In : Plant Disease. 103, 4, p. 737-747 11 p.

  Research output: Contribution to journal › Article
  2 Citations (Scopus)

• Genomic sequence and host range studies reveal considerable variation within the species Arracacha virus B

  Jones, R. A. C., Fox, A., Boonham, N. & Adams, I. P., 1 Nov 2019, In : Archives of Virology. 164, 11, p. 2849-2852 4 p.

  Research output: Contribution to journal › Article

  • Cercopithecine Herpesvirus 1
  • Host Specificity
  • RNA
  • Oxalidaceae
  • Solanum tuberosum
  2 Citations (Scopus)

• Global Dimensions of Plant Virus Diseases: Current Status and Future Perspectives

  Jones, R. A. C. & Naidu, R. A., 29 Sep 2019, In : Annual Review of Virology. 6, p. 387-409 23 p.

  Research output: Contribution to journal › Article

  • Plant Diseases
  • Plant Viruses
  • Virus Diseases
  • Agriculture
  • Viruses
  14 Citations (Scopus)

• Potato virus Y; the Andean connection

  Fuentes, S., Jones, R. A. C., Matsuoka, H., Ohshima, K., Kreuze, J. & Gibbs, A. J., Jul 2019, In : Virus Evolution. 5, 2, 15 p., 037.

  Research output: Contribution to journal › Article

  Open Access

• Viral diseases in potato

  Kreuze, J. F., Souza-Dias, J. A. C., Jeevalatha, A., Figueira, A. R., Valkonen, J. P. T. & Jones, R. A. C., 2019, The Potato Crop: Its Agricultural, Nutritional and Social Contribution to Humankind. Campos, H. & Ortiz, O. (eds.). Springer International Publishing, p. 389-430 42 p.

  Research output: Chapter in Book/Conference paper › Chapter

  Open Access

  • Potato
  • Solanum tuberosum
  • Viruses
  • Virus
  • potatoes
  13 Citations (Scopus)

• Zucchini yellow mosaic virus Genomic Sequences from Papua New Guinea: Lack of Genetic Connectivity with Northern Australian or East Timorese Genomes, and New Recombination Findings

  Maina, S., Barbetti, M. J., Edwards, O. R., Minemba, D., Areke, M. W. & Jones, R. A. C., Jun 2019, In : Plant Disease. 103, 6, p. 1326-1336 11 p.

  Research output: Contribution to journal › Article
  2 Citations (Scopus)
• 2018

  A 33-year-old plant sample contributes the first complete genomic sequence of Potato virus U

  Adams, I. P., Boonham, N. & Jones, R. A. C., 13 Dec 2018, In : Microbiology Resource Announcements. 7, 23, e01392-18.

  Research output: Contribution to journal › Article

  Open Access

  • Nepovirus
  • Solanum tuberosum
  • RNA I
  • Genome
  • Viruses
  4 Citations (Scopus)

• Complete genome sequence of Potato virus T from Bolivia, obtained from a 33-year-old sample

  Adams, I. P., Abad, J., Fribourg, C. E., Boonham, N. & Jones, R. A. C., 8 Nov 2018, In : Microbiology Resource Announcements. 7, 18, e0106618.

  Research output: Contribution to journal › Article

  Open Access

  • Bolivia
  • Solanum tuberosum
  • Genome
  • Viruses
  • Peru
  5 Citations (Scopus)

• Complete genomic sequence of the potyvirus mashua virus Y, obtained from a 33-year-old mashua (Tropaeaolum tuberosum) sample

  Adams, I. P., Fox, A., Boonham, N. & Jones, R. A. C., 18 Oct 2018, In : Microbiology Resource Announcements. 7, 15, e01064-18.

  Research output: Contribution to journal › Article

  Open Access

  • Potyvirus
  • Tropaeolaceae
  • Plant Tubers
  • Tropaeolum
  • Viruses
  5 Citations (Scopus)

• First complete genome sequence of Cucurbit aphidborne yellows virus from Papua New Guinea

  Maina, S., Barbetti, M. J., Edwards, O. R., Minemba, D., Areke, M. W. & Jones, R. A. C., 1 Mar 2018, In : Genome Announcements. 6, 11, e00162-18.

  Research output: Contribution to journal › Article

  Open Access

  • Cucurbit aphid-borne yellows virus
  • Papua New Guinea
  • Genome
  • Viruses
  • Cucumis sativus
  3 Citations (Scopus)

• Full-genome sequencing of a virus from a 33-year-old sample demonstrates that Arracacha mottle virus is synonymous with Arracacha virus Y

  Adams, I. P., Boonham, N. & Jones, R. A. C., 29 Nov 2018, In : Microbiology Resource Announcements. 7, 21, e01393-18.

  Research output: Contribution to journal › Article

  Open Access

  • Genome
  • Viruses
  • Potyvirus
  • Peru
  • Nucleotides
  3 Citations (Scopus)

• New isolates of sweet potato feathery mottle virus and sweet potato virus c: Biological and molecular properties, and recombination analysis based on complete genomes

  Maina, S., Barbetti, M. J., Martin, D. P., Edwards, O. R. & Jones, R. A. C., 1 Oct 2018, In : Plant Disease. 102, 10, p. 1899-1914 16 p.

  Research output: Contribution to journal › Article

  • Sweet potato feathery mottle virus
  • Sweet potato virus C
  • sweet potatoes
  • viruses
  • genome
  6 Citations (Scopus)

• Plant and Insect Viruses in Managed and Natural Environments: Novel and Neglected Transmission Pathways

  Jones, R. A. C., 1 Jan 2018, Advances in Virus Research. Malmstrom, CM. (ed.). USA: ACADEMIC PRESS INC JNL-COMP SUBSCRIPTIONS, p. 149-187 39 p. (Advances in Virus Research; vol. 101).

  Research output: Chapter in Book/Conference paper › Chapter

  • Insect Viruses
  • Plant Viruses
  • Viruses
  • Plant Roots
  • Pollen
  11 Citations (Scopus)

• Strain-specific hypersensitive and extreme resistance phenotypes elicited by Potato virus y among 39 potato cultivars released in three world regions over a 117-year period

  Jones, R. A. C. & Vincent, S. J., 1 Jan 2018, In : Plant Disease. 102, 1, p. 185-196 12 p.

  Research output: Contribution to journal › Article

  Open Access

  • potatoes
  • phenotype
  • viruses
  • cultivars
  • Potato virus Y
  9 Citations (Scopus)

• Sweet potato feathery mottle virus and Sweet potato virus C from East Timorese and Australian Sweetpotato: Biological and Molecular Properties, and Biosecurity Implications

  Maina, S., Barbetti, M. J., Edwards, O. R., de Almeida, L., Ximenes, A. & Jones, R. A., Mar 2018, In : Plant Disease. 102, 3, p. 589-599

  Research output: Contribution to journal › Article

  Open Access

  • Sweet potato virus C
  • Sweet potato feathery mottle virus
  • biosecurity
  • coat proteins
  • Chamaeraphis
  10 Citations (Scopus)

• The biology and phylogenetics of potato virus s isolates from the andean region of south America

  Santillan, F. W., Fribourg, C. E., Adams, I. P., Gibbs, A. J., Boonham, N., Kehoe, M. A., Maina, S. & Jones, R. A. C., 1 May 2018, In : Plant Disease. 102, 5, p. 869-885 17 p.

  Research output: Contribution to journal › Article

  Open Access

  • Potato virus S
  • Andes region
  • potatoes
  • Biological Sciences
  • viruses
  17 Citations (Scopus)
• 2017

  Analysis of an RNA-seq strand-specific library from an East Timorese cucumber sample reveals a complete Cucurbit aphid-borne yellows virus genome

  Maina, S., Edwards, O. R., Almeida, L., Ximenes, A. & Jones, R. A. C., May 2017, In : Genome Announcements. 5, 19, 2 p., e00320-17.

  Research output: Contribution to journal › Article

  Open Access

  • Cucurbit aphid-borne yellows virus
  • Cucumis sativus
  • Libraries
  • RNA
  • Genome
  11 Citations (Scopus)

• Analysis of an RNA-seq strand-specific library sample reveals a complete genome of Hardenbergia mosaic virus from native wisteria, an indigenous virus from southwest Australia

  Maina, S. & Jones, R. A. C., 1 Jul 2017, In : Genome Announcements. 5, 30, 2 p., e00599-17.

  Research output: Contribution to journal › Article

  Open Access

  • Wisteria
  • Mosaic Viruses
  • Libraries
  • RNA
  • Genome
  4 Citations (Scopus)

• A Risk Assessment Framework for Seed Degeneration: Informing an Integrated Seed Health Strategy for Vegetatively Propagated Crops

  Thomas-Sharma, S., Andrade-Piedra, J., Carvajal Yepes, M., Nopsa, J. F. H., Jeger, M. J., Jones, R. A. C., Kromann, P., Legg, J. P., Yuen, J., Forbes, G. A. & Garrett, K. A., Oct 2017, In : Phytopathology. 107, 10, p. 1123-1135 13 p.

  Research output: Contribution to journal › Article

  Open Access
  18 Citations (Scopus)

• Biological and molecular properties of a Turnip mosaic virus (TuMV) strain that breaks TuMV resistances in Brassica napus

  Guerret, M. G. L., Nyalugwe, E. P., Maina, S., Barbetti, M., Van Leur, J. A. G. & Jones, R. A. C., 1 May 2017, In : Plant Disease. 101, 5, p. 674-683 10 p.

  Research output: Contribution to journal › Article

  Open Access

  • Turnip mosaic virus
  • Brassica napus
  • phenotype
  • breeding lines
  • Brassicaceae
  11 Citations (Scopus)

• Building bridges between disciplines for sustainable management of plant virus diseases

  Jeger, M., Bosque-Pérez, N. A., Fereres, A., Jones, R. A. C., Gray, S. M. & Lecoq, H., 15 Sep 2017, In : Virus Research. 241, p. 1-2 2 p.

  Research output: Contribution to journal › Editorial

• Cucumber green mottle mosaic virus: Rapidly Increasing Global Distribution, Etiology, Epidemiology, and Management

  Dombrovsky, A., Tran-Nguyen, L. T. T. & Jones, R. A. C., 4 Aug 2017, In : Annual Review of Phytopathology. 55, p. 231-256 26 p.

  Research output: Contribution to journal › Review article

  • Cucumber green mottle mosaic virus
  • Cucurbitaceae
  • etiology
  • England
  • epidemiology
  40 Citations (Scopus)

• Establishing alighting preferences and species transmission differences for Pea seed-borne mosaic virus aphid vectors

  Congdon, B. S., Coutts, B. A., Renton, M., Flematti, G. R. & Jones, R. A. C., 15 Sep 2017, In : Virus Research. 241, p. 145-155 11 p.

  Research output: Contribution to journal › Article

  • Pea seed-borne mosaic virus
  • Aphids
  • Peas
  • Vicia faba
  • Volatile Organic Compounds
  3 Citations (Scopus)

• First complete enome Sequence of Cucumber green mottle mosaic virus Isolated from Australia

  Kehoe, M. A., Jones, R. A. & Coutts, B. A., 2017, In : Genome Announcements. 5, 12

  Research output: Contribution to journal › Article

  Open Access

  • Cucumber green mottle mosaic virus
  • Tobamovirus
  • Cucumis sativus
  • Genome
  • Israel
  2 Citations (Scopus)

• First Complete Genome Sequence of Arracacha virus A Isolated from a 38-Year-Old Sample from Peru

  Adams, I. P., Boonham, N. & Jones, R. A. C., May 2017, In : Genome Announcements. 5, 18, e00141-17.

  Research output: Contribution to journal › Article

  Open Access

  • Nepovirus
  • Peru
  • RNA I
  • Cucurbitaceae
  • Genome
  4 Citations (Scopus)

• First complete Squash leaf curl China virus genomic segment DNA-A sequence from East Timor

  Maina, S., Edwards, O. R., Almeida, L. D., Ximenes, A. & Jones, R. A. C., 1 Jan 2017, In : Genome Announcements. 5, 24, e00483-17.

  Research output: Contribution to journal › Article

  Open Access

  • Begomovirus
  • Timor-Leste
  • China
  • Cucurbita
  • Genome
  9 Citations (Scopus)

• Forecasting model for Pea seed-borne mosaic virus epidemics in field pea crops in a Mediterranean-type environment

  Congdon, B. S., Coutts, B. A., Jones, R. A. C. & Renton, M., 15 Sep 2017, In : Virus Research. 241, p. 163-171 9 p.

  Research output: Contribution to journal › Article

  • Pea seed-borne mosaic virus
  • Peas
  • Epidemics
  • Seeds
  • Virus Diseases
  2 Citations (Scopus)

• Metagenomic analysis of cucumber RNA from East Timor reveals an Aphid lethal paralysis virus genome

  Maina, S., Edwards, O. R., de Almeida, L., Ximenes, A. & Jones, R. A. C., 2017, In : Genome Announcements. 5, 2, e01445-16.

  Research output: Contribution to journal › Article

  Open Access

  • Timor-Leste
  • Aphids
  • Cucumis sativus
  • Metagenomics
  • Paralysis
  20 Citations (Scopus)

• Papaya ringspot virus Populations From East Timorese and Northern Australian Cucurbit Crops: Biological and Molecular Properties, and Absence of Genetic Connectivity

  Maina, S., Coutts, B. A., Edwards, O. R., Almeida, L., Ximenes, A. & Jones, R. A. C., 2017, In : Plant Disease. 101, 6, p. 985-993

  Research output: Contribution to journal › Article

  Open Access

  • Papaya ringspot virus
  • East Timor
  • Cucurbitaceae
  • honeydew melons
  • pumpkins
  19 Citations (Scopus)

• Pea seed-borne mosaic virus Pathosystem Drivers under Mediterranean-Type Climatic Conditions: Deductions from 23 Epidemic Scenarios

  Congdon, B. S., Coutts, B. A., Renton, M. & Jones, R. A. C., 2017, In : Plant Disease. 101, 6, p. 929-940 12 p.

  Research output: Contribution to journal › Article

  Open Access

  • Pea seed-borne mosaic virus
  • Aphidoidea
  • peas
  • crops
  • seeds
  2 Citations (Scopus)

• Seed fractionation as a phytosanitary control measure for Pea seed-borne mosaic virus infection of field pea seed-stocks

  Congdon, B. S., Coutts, B. A., Renton, M., van Leur, J. A. G. & Jones, R. A. C., 2017, In : European Journal of Plant Pathology. 1, 1, p. 733-737 5 p.

  Research output: Contribution to journal › Article

  • Pea seed-borne mosaic virus
  • control methods
  • peas
  • fractionation
  • seeds
  3 Citations (Scopus)

• The phylogenetics of the global population of potato virus Y and its necrogenic recombinants

  Gibbs, A. J., Ohshima, K., Yasaka, R., Mohammadi, M., Gibbs, M. J. & Jones, R. A. C., 2017, In : Virus Evolution. 3, 1, vex002.

  Research output: Contribution to journal › Article

  Open Access

  • Potyvirus
  • Solanum tuberosum
  • Open Reading Frames
  • Population
  • South America
  24 Citations (Scopus)

• Two complete genome sequences of Squash mosaic virus from 20-year-old cucurbit leaf samples from Australia

  Maina, S., Edwards, O. R. & Jones, R. A. C., 1 Aug 2017, In : Genome Announcements. 5, 32, e00778.

  Research output: Contribution to journal › Article

  Open Access

  • Squash mosaic virus
  • Genome
  • RNA I
  • Japan
  • Nucleotides
  8 Citations (Scopus)

• Zucchini yellow mosaic virus Populations from East Timorese and Northern Australian Cucurbit Crops: Molecular Properties, Genetic Connectivity, and Biosecurity Implications

  Maina, S., Coutts, B. A., Edwards, O. R., Almeida, L., Kehoe, M. A., Ximenes, A. & Jones, R. A. C., 2017, In : Plant Disease. 101, 7, p. 1236-1245

  Research output: Contribution to journal › Article

  Open Access
  18 Citations (Scopus)
• 2016

  A proposal to rationalize within-species plant virus nomenclature: benefits and implications of inaction

  Jones, R. A. C. & Kehoe, M. A., 2016, In : Archives of Virology. 161, 7, p. 2051-2057 7 p.

  Research output: Contribution to journal › Article

  • Plant Viruses
  • Terminology
  • Names
  • Disease Management
  • Viruses
  21 Citations (Scopus)

• Complete genome sequences of the Carlavirus Sweet potato chlorotic fleck virus from East Timor and Australia

  Maina, S., Edwards, O. R., de Almeida, L., Ximenes, A. & Jones, R. A. C., 2016, In : Genome Announcements. 4, 3, p. 1-2 2 p.

  Research output: Contribution to journal › Article

  • Carlavirus
  • Timor-Leste
  • Ipomoea batatas
  • Flecks
  • Genome
  17 Citations (Scopus)

• Complete genome sequences of the Potyvirus Sweet potato virus 2 from East Timor and Australia

  Maina, S., Edwards, O. R., Almeida, L. D., Ximenes, A. & Jones, R. A. C., 2016, In : Genome Announcements. 4, 3, p. 1-2 2 p.

  Research output: Contribution to journal › Article

  • Timor-Leste
  • Potyvirus
  • Ipomoea batatas
  • Genome
  • Viruses
  16 Citations (Scopus)

• Deep sequencing reveals the complete genome sequence of Sweet potato virus G from East Timor

  Maina, S., Edwards, O. R., Barbetti, M. J., de Almeida, L., Ximenes, A. & Jones, R. A. C., 8 Sep 2016, In : Genome Announcements. 4, 5, p. 1-2 2 p., e00957-16.

  Research output: Contribution to journal › Article

  Open Access

  • Timor-Leste
  • Ipomoea batatas
  • High-Throughput Nucleotide Sequencing
  • Republic of Korea
  • Genome
  15 Citations (Scopus)

• Effects of Temperature on Disease Severity in Plants of Subterranean Clover Infected Singly or in Mixed Infection with Bean yellow mosaic virus and Kabatiella caulivora

  Guerret, M. G. L., Barbetti, M. J., You, M. P. & Jones, R. A. C., 2016, In : Journal of Phytopathology. 164, 9, p. 608-619 12 p.

  Research output: Contribution to journal › Article

  • Bean yellow mosaic virus
  • Kabatiella caulivora
  • Medicago
  • Trifolium subterraneum
  • mixed infection
  7 Citations (Scopus)

• First complete genome sequence of Bean common mosaic necrosis virus from East Timor

  Maina, S., Edwards, O. R., Almeida, L. D., Ximenes, A. & Jones, R. A. C., 2016, In : Genome Announcements. 4, 5, p. 1-2 2 p.

  Research output: Contribution to journal › Article

  • Timor-Leste
  • Netherlands
  • Phaseolus
  • Genome
  • Tanzania
  15 Citations (Scopus)