Who’s who in the plant gene world?

2023

Comparative pangenome analyses provide insights into the evolution of Brassica rapa resistance gene analogues (RGAs)

Amas, J. C., Bayer, P. E., Hong Tan, W., Tirnaz, S., Thomas, W. J. W., Edwards, D. & Batley, J., Oct 2023, In: Plant Biotechnology Journal. 21, 10, p. 2100-2112 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

CRISPR-Based Genome Editing Tools: An Accelerator in Crop Breeding for a Changing Future

Zhang, F., Neik, T. X., Thomas, W. J. W. & Batley, J., 11 May 2023, In: International Journal of Molecular Sciences. 24, 10, 27 p., 8623.

Research output: Contribution to journal › Review article › peer-review

Open Access

Diversity of fatty acid biosynthesis genes across the soybean pangenome

Derbyshire, M. C., Marsh, J., Tirnaz, S., Nguyen, H. T., Batley, J., Bayer, P. E. & Edwards, D., Jun 2023, In: Plant Genome. 16, 2, e20334.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Citations (Scopus)

Diversity of Phytosterols in Leaves of Wild Brassicaceae Species as Compared to Brassica napus Cultivars: Potential Traits for Insect Resistance and Abiotic Stress Tolerance

Bootter, M. B., Li, J., Zhou, W., Edwards, D. & Batley, J., 1 May 2023, In: Plants. 12, 9, 15 p., 1866.

Research output: Contribution to journal › Article › peer-review

Open Access

Identification of candidate genes for LepR1 resistance against Leptosphaeria maculans in Brassica napus

Cantila, A. Y., Thomas, W. J. W., Saad, N. S. M., Severn-Ellis, A. A., Anderson, R., Bayer, P. E., Edwards, D., Van de Wouw, A. P. & Batley, J., 14 Feb 2023, In: Frontiers in Plant Science. 14, 10 p., 1051994.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

In silico prediction and analysis of transmembrane-coiled-coil resistance gene analogues in 27 Brassicaceae species

Cantila, A. Y., Thomas, W. J. W., Bayer, P. E., Edwards, D. & Batley, J., 18 Aug 2023, (E-pub ahead of print) In: Plant Pathology.

Research output: Contribution to journal › Article › peer-review

Open Access

Legume-wide comparative analysis of pod shatter locus PDH1 reveals phaseoloid specificity, high cowpea expression and stress responsive genomic context

Marsh, J. I., Nestor, B. J., Petereit, J., Tay Fernandez, C. G., Bayer, P. E., Batley, J. & Edwards, D., Jul 2023, In: The Plant Journal. 115, 1, p. 68-80 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Citations (Scopus)

Segmentation of Sandplain Lupin Weeds from Morphologically Similar Narrow-Leafed Lupins in the Field

Danilevicz, M. F., Rocha, R. L., Batley, J., Bayer, P. E., Bennamoun, M., Edwards, D. & Ashworth, M. B., Apr 2023, In: Remote Sensing. 15, 7, 1817.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

Supporting crop plant resilience during climate change

Yuan, Y., Ton, B. L., Thomas, W. J. W., Batley, J. & Edwards, D., 1 Jul 2023, In: Crop Science. 63, 4, p. 1816-1828 13 p.

Research output: Contribution to journal › Review article › peer-review

Open Access

The conservation of gene models can support genome annotation

Tay Fernandez, C. G., Bayer, P. E., Petereit, J., Varshney, R., Batley, J. & Edwards, D., Sept 2023, In: Plant Genome. 16, 3, e20377.

Research output: Contribution to journal › Article › peer-review

Open Access

Updated guidelines for gene nomenclature in wheat

the Wheat Initiative, Apr 2023, In: Theoretical and Applied Genetics. 136, 4, 16 p., 72.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Citations (Scopus)

2022

Advancing designer crops for climate resilience through an integrated genomics approach

Mohd Saad, N. S., Neik, T. X., Thomas, W. J. W., Amas, J. C., Cantila, A. Y., Craig, R. J., Edwards, D. & Batley, J., Jun 2022, In: Current Opinion in Plant Biology. 67, 102220.

Research output: Contribution to journal › Review article › peer-review

Open Access

10 Citations (Web of Science)

Application of crop wild relatives in modern breeding: An overview of resources, experimental and computational methodologies

Tirnaz, S., Zandberg, J., Thomas, W. J. W., Marsh, J., Edwards, D. & Batley, J., 17 Nov 2022, In: Frontiers in Plant Science. 13, 1008904.

Research output: Contribution to journal › Review article › peer-review

Open Access

8 Citations (Scopus)

Copy Number Variation among Resistance Genes Analogues in Brassica napus

Dolatabadian, A., Yuan, Y., Bayer, P., Petereit, J., Severn-Ellis, A., Tirnaz, S., Patel, D., Edwards, D. & Batley, J., 4 Nov 2022, In: Genes. 13, 11, p. 1-17 17 p., 2037.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

Evaluating Plant Gene Models Using Machine Learning

Upadhyaya, S. R., Bayer, P. E., Tay Fernandez, C. G., Petereit, J., Batley, J., Bennamoun, M., Boussaid, F. & Edwards, D., 1 Jun 2022, In: Plants. 11, 12, 1619.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

Expanding Gene-Editing Potential in Crop Improvement with Pangenomes

Tay Fernandez, C. G., Nestor, B. J., Danilevicz, M. F., Marsh, J. I., Petereit, J., Bayer, P. E., Batley, J. & Edwards, D., 1 Feb 2022, In: International Journal of Molecular Sciences. 23, 4, 2276.

Research output: Contribution to journal › Review article › peer-review

Open Access

10 Citations (Scopus)

Genetic and Genomic Resources for Soybean Breeding Research

Petereit, J., Marsh, J. I., Bayer, P. E., Danilevicz, M. F., Thomas, W. J. W., Batley, J. & Edwards, D., 1 May 2022, In: Plants. 11, 9, 1181.

Research output: Contribution to journal › Review article › peer-review

Open Access

3 Citations (Scopus)

Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003

Marsh, J. I., Hu, H., Petereit, J., Bayer, P. E., Valliyodan, B., Batley, J., Nguyen, H. T. & Edwards, D., Apr 2022, In: Theoretical and Applied Genetics. 135, 4, p. 1443-1455 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

12 Citations (Scopus)

Isolation and Sequencing of Chromosome Arm 7RS of Rye, Secale cereale

Petereit, J., Tay Fernandez, C., Marsh, J. I., Bayer, P. E., Thomas, W. J. W., Aliyeva, A. J., Karafiátová, M., Doležel, J., Batley, J. & Edwards, D., Oct 2022, In: International Journal of Molecular Sciences. 23, 19, 8 p., 11106.

Research output: Contribution to journal › Article › peer-review

Open Access

Machine learning models outperform deep learning models, provide interpretation and facilitate feature selection for soybean trait prediction

Gill, M., Anderson, R., Hu, H., Bennamoun, M., Petereit, J., Valliyodan, B., Nguyen, H. T., Batley, J., Bayer, P. E. & Edwards, D., Dec 2022, In: BMC Plant Biology. 22, 1, 180.

Research output: Contribution to journal › Article › peer-review

Open Access

11 Citations (Scopus)

Mining of Cloned Disease Resistance Gene Homologs (CDRHs) in Brassica Species and Arabidopsis thaliana

Cantila, A. Y., Neik, T. X., Tirnaz, S., Thomas, W. J. W., Bayer, P. E., Edwards, D. & Batley, J., Jun 2022, In: Biology. 11, 6, 821.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Citations (Scopus)

Pangenomics and Crop Genome Adaptation in a Changing Climate

Petereit, J., Bayer, P. E., Thomas, W. J. W., Tay Fernandez, C. G., Amas, J., Zhang, Y., Batley, J. & Edwards, D., Aug 2022, In: Plants. 11, 15, 1949.

Research output: Contribution to journal › Review article › peer-review

Open Access

8 Citations (Scopus)

Plant Genotype to Phenotype Prediction Using Machine Learning

Furaste Danilevicz, M., Gill, M., Anderson, R., Batley, J., Bennamoun, M., Bayer, P. E. & Edwards, D., 18 May 2022, In: Frontiers in Genetics. 13, 822173.

Research output: Contribution to journal › Review article › peer-review

Open Access

11 Citations (Scopus)

Predicting Cloned Disease Resistance Gene Homologs (CDRHs) in Radish, Underutilised Oilseeds, and Wild Brassicaceae Species

Cantila, A. Y., Thomas, W. J. W., Bayer, P. E., Edwards, D. & Batley, J., Nov 2022, In: Plants. 11, 22, 3010.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

The Global Assessment of Oilseed Brassica Crop Species Yield, Yield Stability and the Underlying Genetics

Zandberg, J. D., Fernandez, C. T., Danilevicz, M. F., Thomas, W. J. W., Edwards, D. & Batley, J., Oct 2022, In: Plants. 11, 20, 2740.

Research output: Contribution to journal › Review article › peer-review

Open Access

1 Citation (Scopus)

The pangenome of banana highlights differences between genera and genomes

Rijzaani, H., Bayer, P. E., Rouard, M., Doležel, J., Batley, J. & Edwards, D., Mar 2022, In: The Plant Genome. 15, 1, e20100.

Research output: Contribution to journal › Article › peer-review

Open Access

26 Citations (Scopus)

Use of multiple ‘omics techniques to accelerate the breeding of abiotic stress tolerant crops

Derbyshire, M. C., Batley, J. & Edwards, D., Dec 2022, In: Current Plant Biology. 32, 100262.

Research output: Contribution to journal › Review article › peer-review

Open Access

13 Citations (Scopus)

Wheat Panache: A pangenome graph database representing presence-absence variation across sixteen bread wheat genomes

Bayer, P. E., Petereit, J., Durant, É., Monat, C., Rouard, M., Hu, H., Chapman, B., Li, C., Cheng, S., Batley, J. & Edwards, D., Sept 2022, In: The Plant Genome. 15, 3, p. e20221 e20221.

Research output: Contribution to journal › Article › peer-review

Open Access