Tim Colmer

Professor, BSc(Agric) W.Aust., PhD Calif.

  • The University of Western Australia (M460), 35 Stirling Highway, Room 1.032, Agriculture North Wing, Faculty of Science, Perth Campus

    6009 Perth

    Australia

  • 10545 Citations
  • 52 h-Index
1995 …2021
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Research Output 1995 2019

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Article
2019
submergence
stem elongation
Gases
gases
Gene Expression
2 Citations (Scopus)

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

Varshney, R. K., Thudi, M., Roorkiwal, M., He, W., Upadhyaya, H. D., Yang, W., Bajaj, P., Cubry, P., Rathore, A., Jian, J., Doddamani, D., Khan, A. W., Garg, V., Chitikineni, A., Xu, D., Gaur, P. M., Singh, N. P., Chaturvedi, S. K., Nadigatla, G. V. P. R., Krishnamurthy, L. & 20 othersDixit, G. P., Fikre, A., Kimurto, P. K., Sreeman, S. M., Bharadwaj, C., Tripathi, S., Wang, J., Lee, S-H., Edwards, D., Polavarapu, K. K. B., Penmetsa, R. V., Crossa, J., Nguyen, H. T., Siddique, K. H. M., Colmer, T. D., Sutton, T., von Wettberg, E., Vigouroux, Y., Xu, X. & Liu, X., May 2019, In : Nature Genetics. 51, 5, p. 857-+ 11 p.

Research output: Contribution to journalArticle

hexanoic acid
Acclimatization
organic acids and salts
acclimation
Caproates
1 Citation (Scopus)

Root phenotypes of dwarf and "overgrowth" SLN1 barley mutants, and implications for hypoxic stress tolerance

Moriconi, J., Kotula, L., Santa-Maria, G. E. & Colmer, T. D., 2019, In : Journal of Plant Physiology. 234, p. 60-70 11 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Salinity tolerance in chickpea is associated with the ability to 'exclude' Na from leaf mesophyll cells

Kotula, L., Clode, P. L., Jimenez, J. D. L. C. & Colmer, T. D., 24 Sep 2019, In : Journal of Experimental Botany. 70, 18, p. 4991-5002 12 p.

Research output: Contribution to journalArticle

Open Access
Mesophyll Cells
Cicer
Salinity
mesophyll
salinity
4 Citations (Scopus)

Sensitivity of chickpea and faba bean to root-zone hypoxia, elevated ethylene, and carbon dioxide

Munir, R., Konnerup, D., Khan, H. A., Siddique, K. H. M. & Colmer, T. D., 1 Jan 2019, In : Plant Cell and Environment. 42, 1, p. 85-97 13 p.

Research output: Contribution to journalArticle

Cicer
Vicia faba
faba beans
Carbon Dioxide
hypoxia
Melilotus siculus
Medicago polymorpha
Trifolium
waterlogging
forage legumes
2018
1 Citation (Scopus)

CO2 and O2 dynamics in leaves of aquatic plants with C3 or CAM photosynthesis - application of a novel CO2 microsensor

Pedersen, O., Colmer, T. D., Garcia-Robledo, E. & Revsbech, N. P., 24 Sep 2018, In : Annals of Botany. 122, 4, p. 605-615 11 p.

Research output: Contribution to journalArticle

Crassulacean acid metabolism
aquatic plants
photosynthesis
carbon dioxide
leaves
12 Citations (Scopus)
Open Access
marker-assisted selection
drought tolerance
single nucleotide polymorphism
chromosome mapping
genome
6 Citations (Scopus)

Leaf gas films contribute to rice (Oryza sativa) submergence tolerance during saline floods

Herzog, M., Konnerup, D., Pedersen, O., Winkel, A. & Colmer, T. D., May 2018, In : Plant Cell and Environment. 41, 5, p. 885-897 13 p.

Research output: Contribution to journalArticle

submergence
Oryza sativa
Gases
gases
rice
3 Citations (Scopus)
Sulfides
sulfides
seagrass
cable
colonization
9 Citations (Scopus)

Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance

Kurokawa, Y., Nagai, K., Huan, P. D., Shimazaki, K., Qu, H., Mori, Y., Toda, Y., Kuroha, T., Hayashi, N., Aiga, S., Itoh, J. I., Yoshimura, A., Sasaki-Sekimoto, Y., Ohta, H., Shimojima, M., Malik, A. I., Pedersen, O., Colmer, T. D. & Ashikari, M., 1 Jun 2018, In : New Phytologist. 218, 4, p. 1558-1569 12 p.

Research output: Contribution to journalArticle

Waxes
hydrophobicity
Hydrophobic and Hydrophilic Interactions
waxes
films (materials)
6 Citations (Scopus)
Atriplex
Atriplex nummularia
soil salinization
Groundwater
soil solution
3 Citations (Scopus)

Waterlogging of Winter Crops at Early and Late Stages: Impacts on Leaf Physiology, Growth and Yield

Antonella Ploschuk, R., Julio Miralles, D., Colmer, T. D., Leonardo Ploschuk, E. & Gabriel Striker, G., 20 Dec 2018, In : Frontiers in Plant Science. 9, 15 p., 1863.

Research output: Contribution to journalArticle

Open Access
6 Citations (Scopus)
Melilotus siculus
forage legumes
flooded conditions
nitrates
oxygen
2017
10 Citations (Scopus)

A major locus involved in the formation of the radial oxygen loss barrier in adventitious roots of teosinte Zea nicaraguensis is located on the short-arm of chromosome 3

Watanabe, K., Takahashi, H., Sato, S., Nishiuchi, S., Omori, F., Malik, A. I., Colmer, T. D., Mano, Y. & Nakazono, M., 1 Feb 2017, In : Plant Cell and Environment. 40, 2, p. 304-316 13 p.

Research output: Contribution to journalArticle

Zea nicaraguensis
Chromosomes, Human, Pair 3
Zea
adventitious roots
Zea mays
9 Citations (Scopus)
Hordeum marinum
adventitious roots
flooded conditions
suberization
suberin
25 Citations (Scopus)

Community recommendations on terminology and procedures used in flooding and low oxygen stress research

Sasidharan, R., Bailey-Serres, J., Ashikari, M., Atwell, B. J., Colmer, T. D., Fagerstedt, K., Fukao, T., Geigenberger, P., Hebelstrup, K. H., Hill, R. D., Holdsworth, M. J., Ismail, A. M., Licausi, F., Mustroph, A., Nakazono, M., Pedersen, O., Perata, P., Sauter, M., Shih, M. C., Sorrell, B. K. & 6 othersStriker, G., van Dongen, J. T., Whelan, J., Xiao, S., Visser, E. J. W. & Voesenek, L. A. C. J., 9 Mar 2017, In : New Phytologist. 214, 4, p. 1403–1407

Research output: Contribution to journalArticle

5 Citations (Scopus)

Differential responses of three coastal grassland species to seawater flooding

Hanley, M. E., Grove, T. L., Cawthray, G. R. & Colmer, T. D., 1 Apr 2017, In : Journal of Plant Ecology. 10, 2, p. 322-330

Research output: Contribution to journalArticle

flooding
seawater
grasslands
grassland
Leontodon
3 Citations (Scopus)

Energetics of acclimation to NaCl by submerged, anoxic rice seedlings

Kurniasih, B., Greenway, H. & Colmer, T. D., 2017, In : Annals of Botany. 119, 1, p. 129-142 14 p.

Research output: Contribution to journalArticle

coleoptiles
acclimation
hypoxia
rice
seedlings
6 Citations (Scopus)

Evaluation of root porosity and radial oxygen loss of disomic addition lines of Hordeum marinum in wheat

Konnerup, D., Malik, A. I. I., Islam, A. K. M. R. & Colmer, T. D., 2017, In : Functional Plant Biology. 44, 4, p. 400-409 10 p.

Research output: Contribution to journalArticle

Hordeum marinum
disomics
porosity
chromosome addition
oxygen

Hydraulic redistribution: limitations for plants in saline soils

Bazihizina, N., Veneklaas, E. J., Barrett-Lennard, E. G. & Colmer, T. D., 1 Oct 2017, In : Plant Cell and Environment. 40, 10, p. 2437-2446 10 p.

Research output: Contribution to journalArticle

saline soils
fluid mechanics
Soil
Salinity
Water
5 Citations (Scopus)
Open Access
19 Citations (Scopus)

Revealing the roles of GORK channels and NADPH oxidase in acclimation to hypoxia in Arabidopsis

Wang, F., Chen, Z. H., Liu, X., Colmer, T. D., Shabala, L., Salih, A., Zhou, M. & Shabala, S., 1 Jun 2017, In : Journal of Experimental Botany. 68, 12, p. 3191-3204 14 p.

Research output: Contribution to journalArticle

Open Access
NADPH Oxidase
Acclimatization
Arabidopsis
hypoxia
acclimation

Uptake of inorganic phosphorus by the aquatic plant Isoetes australis inhabiting oligotrophic vernal rock pools

Christiansen, N. H., Pulido, C., Pedersen, O., Colmer, T. D., Andersen, F., Jensen, H. S. & Konnerup, D., 1 Feb 2017, In : Aquatic Botany. 138, p. 64-73 10 p.

Research output: Contribution to journalArticle

Isoetes
rock pool
inorganic phosphorus
aquatic plant
aquatic plants
12 Citations (Scopus)
Open Access
Salt-Tolerance
Cicer
salt tolerance
Sucrose
Carbon
2016
38 Citations (Scopus)
Photosynthesis
aeration
tides
heat stress
Respiration
11 Citations (Scopus)

Leaf gas films, underwater photosynthesis and plant species distributions in a flood gradient

Winkel, A., Visser, E. J. W., Colmer, T., Brodersen, K. P., Voesenek, L. A. C. J., Sand-Jensen, K. & Pedersen, O., 2016, In : Plant, Cell and Environment. 39, 7, p. 1537-1548

Research output: Contribution to journalArticle

Plant Dispersal
Photosynthesis
biogeography
Gases
gases
8 Citations (Scopus)
Bryophyta
Photosynthesis
mosses and liverworts
Soil
photosynthesis
134 Citations (Scopus)
390 Downloads (Pure)

Neglecting legumes has compromised human health and sustainable food production

Foyer, C., Lam, H. M., Nguyen, H. T., Siddique, K., Varshney, R., Colmer, T., Cowling, W., Bramley, H., Mori, T., Hodgson, J., Cooper, J. W., Miller, A. J., Kunert, K., Vorster, J., Cullis, C., Ozga, J. A., Wahlqvist, M. L., Liang, Y., Shou, H., Shi, K. & 6 othersYu, J., Fodor, N., Kaiser, B. N., Wong, F. L., Valliyodan, B. & Considine, M., 2 Aug 2016, In : Nature Plants. 2, 8, p. 1-10

Research output: Contribution to journalArticle

Open Access
File
food production
human health
legumes
food security
range improvement
18 Citations (Scopus)
240 Downloads (Pure)
Open Access
File
Photosynthesis
photosynthesis
Zosteraceae
Carbon
Light
27 Citations (Scopus)
Open Access
2 Citations (Scopus)
halophytes
salinity
shoots
Bidens
saline soils
10 Citations (Scopus)

Salt sensitivity in chickpea is determined by sodium toxicity

Khan, H., Siddique, K. H. M. & Colmer, T. D., 2016, In : Planta. 244, 3, p. 623-637 15 p.

Research output: Contribution to journalArticle

Cicer
Salts
Sodium
sodium
toxicity
14 Citations (Scopus)
Cicer arietinum
salt stress
flowering
ions
salinity
52 Downloads (Pure)

Spectral detection of stress-related pigments in salt-lake succulent halophytic shrubs

Marchesini, V., Guerschman, J. P., Schweiggert, R. M., Colmer, T. & Veneklaas, E., Oct 2016, In : International Journal of Applied Earth Observation and Geoinformation. 52, p. 457-463

Research output: Contribution to journalArticle

Open Access
File
saline lake
Chlorophyll
Pigments
Lakes
pigment
25 Citations (Scopus)

Tissue-specific root ion profiling reveals essential roles of the CAX and ACA calcium transport systems in response to hypoxia in Arabidopsis

Wang, F., Chen, Z-H., Liu, X., Colmer, T. D., Zhou, M. & Shabala, S., Jun 2016, In : Journal of Experimental Botany. 67, 12, p. 3747-3762 16 p.

Research output: Contribution to journalArticle

Open Access
2015
5 Citations (Scopus)
Open Access
halophytes
submergence
oxygen
stems
photosynthesis
16 Citations (Scopus)
175 Downloads (Pure)
Open Access
File
Eucalyptus
Eucalyptus camaldulensis
arid lands
Photosynthesis
root systems
6 Citations (Scopus)
18 Citations (Scopus)

Efficient use of energy in anoxia-tolerant plants with focus on germinating rice seedlings

Atwell, B. J., Greenway, H. & Colmer, T., 2015, In : New Phytologist. 206, 1, p. 36-56

Research output: Contribution to journalArticle

Seedlings
hypoxia
peptidylprolyl isomerase
Peptidylprolyl Isomerase
solutes
13 Citations (Scopus)
Melilotus siculus
hypoxia
growth response
aeration
rhizosphere
23 Citations (Scopus)

Oxygen deficiency and salinity affect cell-specific ion concentrations in adventitious roots of barley (Hordeum vulgare)

Kotula, L., Clode, P., Striker, G., Pedersen, O., Läuchli, A., Shabala, S. & Colmer, T., Dec 2015, In : New Phytologist. 208, 4, p. 1114-1125 12 p.

Research output: Contribution to journalArticle

Salinity
adventitious roots
Hordeum
Hordeum vulgare
hypoxia
29 Citations (Scopus)
Cicer
Photosynthesis
yield components
seed yield
Seeds
26 Citations (Scopus)
Open Access
Cicer
yield components
Seeds
Salts
Genotype
19 Citations (Scopus)

Spatio-temporal relief from hypoxia and production of reactive oxygen species during bud burst in grapevine (Vitis vinifera)

Meitha, K., Konnerup, D., Colmer, T., Considine, J., Foyer, C. & Considine, M., 3 Sep 2015, In : Annals of Botany. 116, 4, p. 703-711

Research output: Contribution to journalArticle

Open Access
Vitis vinifera
hypoxia
reactive oxygen species
buds
meristems
19 Citations (Scopus)

Two key genomic regions harbour QTLs for salinity tolerance in ICCV 2 × JG 11 derived chickpea (Cicer arietinum L.) recombinant inbred lines

Pushpavalli, R., Krishnamurthy, L., Thudi, M., Gaur, P. M., Rao, M. V., Siddique, K., Colmer, T., Turner, N., Varshney, R. K. & Vadez, V., 22 May 2015, In : BMC Plant Biology. 15, 1, p. 1-15

Research output: Contribution to journalArticle

Open Access
Cicer arietinum
inbred lines
quantitative trait loci
salinity
genomics
24 Citations (Scopus)

Waterlogging tolerance is associated with root porosity in barley (Hordeum vulgare L.)

Broughton, S., Zhou, G., Teakle, N., Matsuda, R., Zhou, M., O’leary, R. A., Colmer, T. & Li, C., 2015, In : Molecular Breeding. 35, 1, p. 1-15

Research output: Contribution to journalArticle

Porosity
flooded conditions
Hordeum
Hordeum vulgare
porosity
2014
9 Citations (Scopus)

Characterization of the multigene family TaHKT 2;1 in bread wheat and the role of gene members in plant Na+ and K+ status

Ariyarathna, H. C. K., Ul Haq, T., Colmer, T. & Francki, M. G., 2014, In : BMC Plant Biology. 14, 1, p. 15pp

Research output: Contribution to journalArticle

Open Access
multigene family
wheat
aneuploidy
genes
pseudogenes