Thomas Holmes

Dr

  • The University of Western Australia (M470), 35 Stirling Highway,

    6009 Perth

    Australia

  • 622 Citations
  • 12 h-Index
20122019
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Research Output 2012 2019

  • 622 Citations
  • 12 h-Index
  • 22 Article
  • 1 Review article
2019

Cross and long-shore variations in reef fish assemblage structure and implications for biodiversity management

Bach, L. L., Saunders, B. J., Newman, S. J., Holmes, T. H. & Harvey, E. S., 5 Mar 2019, In : Estuarine, Coastal and Shelf Science. 218, p. 246-257 12 p.

Research output: Contribution to journalArticle

reefs
reef
biodiversity
fish
marine park
1 Citation (Scopus)

Cross-shelf Heterogeneity of Coral Assemblages in Northwest Australia

Moustaka, M., Mohring, M. B., Holmes, T., Evans, R. D., Thomson, D., Nutt, C., Stoddart, J. & Wilson, S. K., Feb 2019, In : Diversity. 11, 2, 19 p., 15.

Research output: Contribution to journalArticle

Open Access

Disentangling the response of fishes to recreational fishing over 30 years within a fringing coral reef reserve network

Cresswell, A. K., Langlois, T. J., Wilson, S. K., Claudet, J., Thomson, D. P., Renton, M., Fulton, C. J., Fisher, R., Vanderklift, M. A., Babcock, R. C., Stuart-Smith, R. D., Haywood, M. D. E., Depczynski, M., Westera, M. B., Ayling, A. M., Fitzpatrick, B., Halford, A. R., McLean, D. L., Pillans, R. D., Cheal, A. J. & 5 othersTinkler, P., Edgar, G. J., Graham, N. A. J., Harvey, E. S. & Holmes, T. H., 1 Sep 2019, In : Biological Conservation. 237, p. 514-524 11 p.

Research output: Contribution to journalArticle

reserve networks
fringing reef
sport fishing
coral reefs
coral reef
9 Citations (Scopus)

Form and function of tropical macroalgal reefs in the Anthropocene

Fulton, C. J., Abesamis, R. A., Berkstroem, C., Depczynski, M., Graham, N. A. J., Holmes, T. H., Kulbicki, M., Noble, M. M., Radford, B. T., Tano, S., Tinkler, P., Wernberg, T. & Wilson, S. K., Jun 2019, In : Functional Ecology. 33, 6, p. 989-999 11 p.

Research output: Contribution to journalReview article

2018
6 Citations (Scopus)

Climatic forcing and larval dispersal capabilities shape the replenishment of fishes and their habitat-forming biota on a tropical coral reef

Wilson, S. K., Depcyznski, M., Fisher, R., Holmes, T. H., Noble, M. M., Radford, B. T., Rule, M., Shedrawi, G., Tinkler, P. & Fulton, C. J., Feb 2018, In : Ecology and Evolution. 8, 3, p. 1918-1928

Research output: Contribution to journalArticle

Open Access
El Nino
El Nino-Southern Oscillation
coral reefs
coral reef
biota
7 Citations (Scopus)

Visual versus video methods for estimating reef fish biomass

Wilson, S. K., Graham, N. A. J., Holmes, T. H., MacNeil, M. A. & Ryan, N. M., 1 Feb 2018, In : Ecological Indicators. 85, p. 146-152 7 p.

Research output: Contribution to journalArticle

reefs
reef
biomass
fish
census
2017
7 Citations (Scopus)

A novel stereo-video method to investigate fish–habitat relationships

Collins, D. L., Langlois, T., Bond, T., Holmes, T. H., Harvey, E. S., Fisher, R. & McLean, D. L., 1 Jan 2017, In : Methods in Ecology and Evolution. 8, 1, p. 116-125 10 p.

Research output: Contribution to journalArticle

habitat
methodology
fish
habitats
relief
21 Citations (Scopus)

Assessing national biodiversity trends for rocky and coral reefs through the integration of citizen science and scientific monitoring programs

Stuart-Smith, R. D., Edgar, G. J., Barrett, N. S., Bates, A. E., Baker, S. C., Bax, N. J., Becerro, M. A., Berkhout, J., Blanchard, J. L., Brock, D. J., Clark, G. F., Cooper, A. T., Davis, T. R., Day, P. B., Duffy, E., Holmes, T. H., Howe, S. A., Jordan, A., Kininmonth, S., Knott, N. A. & 6 othersLefcheck, J. S., Ling, S. D., Parr, A., Strain, E., Sweatman, H. P. A. & Thomson, R., 1 Feb 2017, In : Bioscience. 67, 2, p. 134-146 13 p.

Research output: Contribution to journalArticle

Open Access
14 Citations (Scopus)

Climatic conditions and nursery habitat quality provide indicators of reef fish recruitment strength

Wilson, S. K., Depczynski, M., Holmes, T. H., Noble, M. M., Radford, B. T., Tinkler, P. & Fulton, C. J., Sep 2017, In : Limnology and Oceanography. 62, 5, p. 1868–1880

Research output: Contribution to journalArticle

habitat quality
strength (mechanics)
reefs
reef
Southern Oscillation
30 Citations (Scopus)

Human Disruption of Coral Reef Trophic Structure

Graham, N. A. J., McClanahan, T. R., MacNeil, M. A., Wilson, S. K., Cinner, J. E., Huchery, C. & Holmes, T. H., 23 Jan 2017, In : Current Biology. 27, 2, p. 231-236 6 p.

Research output: Contribution to journalArticle

Coral Reefs
Reefs
Biomass
coral reefs
biomass
2016
246 Citations (Scopus)

Climate-driven regime shift of a temperate marine ecosystem

Wernberg, T., Bennett, S., Babcock, R., De Bettignies, T., Cure Chams, K., Depczynski, M., Dufois, F., Fromont, J., Fulton, C. J., Hovey, R., Harvey, E. S., Holmes, T., Kendrick, G., Radford, B., Santana Garcon, J., Saunders, B. J., Smale, D., Thomsen, M., Tuckett, C., Tuya, F. & 2 othersVanderklift, M. A. & Wilson, S., 8 Jul 2016, In : Science. 353, 6295, p. 169-172

Research output: Contribution to journalArticle

Kelp
Climate
Ecosystem
Seaweed
Extreme Heat
22 Citations (Scopus)

Distribution, abundance, diversity and habitat associations of fishes across a bioregion experiencing rapid coastal development

McLean, D. L., Langlois, T. J., Newman, S. J., Holmes, T. H., Birt, M. J., Bornt, K. R., Bond, T., Collins, D. L., Evans, S. N., Travers, M. J., Wakefield, C. B., Babcock, R. C. & Fisher, R., 2016, In : Estuarine, Coastal and Shelf Science. 178, p. 36-47 12 p.

Research output: Contribution to journalArticle

coastal development
habitat
fish
habitats
Western Australia
9 Citations (Scopus)

Influence of nursery microhabitats on the future abundance of a coral reef fish

Wilson, S. K., Depczynski, M., Fulton, C. J., Holmes, T. H., Radford, B. T. & Tinkler, P., 2016, In : Proceedings of the Royal Society B: Biological Sciences. 283, 1836

Research output: Contribution to journalArticle

Coral Reefs
Reefs
Nurseries
microhabitat
Anthozoa
19 Citations (Scopus)

Specialization within a shifting habitat mosaic underpins the seasonal abundance of a tropical fish

Lim, I. E., Wilson, S. K., Holmes, T. H., Noble, M. M. & Fulton, C. J., 2016, In : Ecosphere. 7, 2

Research output: Contribution to journalArticle

Open Access
habitat mosaic
tropical fish
seaweed
canopy
fish
1 Citation (Scopus)

Strategic marine ecological research priorities for CALM act marine parks and reserves 2016–2021

Kendrick, A., Wilson, S., Friedman, K., Waples, K., Whiting, S., Holmes, T., Rule, M., Halford, A., Quartermaine, T., Bobojcov, A., McCarthy, A., Stevens, D., Marshall, R., Barnes, P., Holley, D., Jennings, P., Evans, M., Dasey, M., Ossinger, S. & Holmes, J., 2016, In : Conservation Science Western Australia. 10

Research output: Contribution to journalArticle

marine park
invertebrate
finfish
filter feeding
conservation management
2015
5 Citations (Scopus)

Habitat selectivity and reliance on live corals for Indo-Pacific hawkfishes (family: Cirrhitidae)

Coker, D. J., Hoey, A. S., Wilson, S., Depczynski, M., Graham, N. A. J., Hobbs, J. P. A., Holmes, T. & Pratchett, M. S., 3 Nov 2015, In : PLoS One. 10, 11, p. 1-17 17 p., e0138136.

Research output: Contribution to journalArticle

Open Access
Anthozoa
Ecosystem
corals
habitats
Reefs
2014
9 Citations (Scopus)

Quantitative diet analysis of four mesopredators from a coral reef

Ashworth, E. C., Depczynski, M., Holmes, T. & Wilson, S., 2014, In : Journal of Fish Biology. 84, 4, p. 1031-1045

Research output: Contribution to journalArticle

coral reefs
coral reef
crustacean
Pseudochromidae
reefs
18 Citations (Scopus)

Seasonal changes in habitat structure underpin shifts in macroalgae-associated tropical fish communities

Wilson, S., Fulton, C. J., Depczynski, M., Holmes, T., Noble, M. M., Radford, B. & Tinkler, P., Nov 2014, In : Marine Biology. 161, 11, p. 2597-2607 11 p.

Research output: Contribution to journalArticle

tropical fish
habitat structure
macroalgae
habitat
fish
37 Citations (Scopus)
262 Downloads (Pure)

Sea temperature shapes seasonal fluctuations in seaweed biomass within the Ningaloo coral reef ecosystem

Fulton, C. J., Depczynski, M., Holmes, T., Noble, M. M., Radford, B., Wernberg, T. & Wilson, S., 9 Jan 2014, In : Limnology and Oceanography. 59, 1, p. 156-166 11 p.

Research output: Contribution to journalArticle

Open Access
File
seaweed
coral reefs
coral reef
macroalgae
Sargassum
2013
39 Citations (Scopus)

A comparison of visual- and stereo-video based fish community assessment methods in tropical and temperate marine waters of Western Australia

Holmes, T., Wilson, S., Travers, M. J., Langlois, T., Evans, R., Moore, G. I., Douglas, R. A., Shedrawi, G., Harvey, E. & Hickey, K., 2013, In : Limnology and Oceanography: Methods. 11, p. 337 - 350

Research output: Contribution to journalArticle

31 Citations (Scopus)

Critical research needs for managing coral reef marine protected areas: Perspectives of academics and managers

Cvitanovic, C., Wilson, S., Fulton, C. J., Almany, G. R., Anderson, P., Babcock, R. C., Ban, N. C., Beeden, R. J., Beger, M., Cinner, J., Dobbs, K., Evans, L. S., Farnham, A., Friedman, K., Gale, K., Gladstone, W., Grafton, Q., Graham, N. A. J., Gudge, S., Harrison, P. L. & 17 othersHolmes, T., Johnstone, N., Jones, G. P., Jordan, A., Kendrick, A. J., Klein, C. J., Little, L. R., Malcolm, H. A., Morris, D., Possingham, H. P., Prescott, J., Pressey, R. L., Skilleter, G. A., Simpson, C., Waples, K., Wilson, D. & Williamson, D. H., 2013, In : Journal of Environmental Management. 114, p. 84-91

Research output: Contribution to journalArticle

2012
16 Citations (Scopus)

The role of Thalassoma lunare as a predator of juvenile fish on a sub-tropical coral reef

Holmes, T., Wilson, S., Vanderklift, M., Babcock, R. & Fraser, R., 2012, In : Coral Reefs. 31, p. 1113–1123

Research output: Contribution to journalArticle

75 Citations (Scopus)

Unprecedented mass bleaching and loss of coral across 12o of latitude in Western Australia in 2010-11

Moore, JAY., Bellchambers, L., Depczynski, M., Evans, R., Evans, S. N., Field, S., Friedman, K., Gilmour, J., Holmes, T., Middlebrook, R., Radford, B., Ridgway, T., Shedrawi, G., Taylor, H., Thomson, D. P. & Wilson, S., 2012, In : PLoS One. 7, p. 11pp

Research output: Contribution to journalArticle

Open Access