Sam Buckberry

Mr, PhD, BSc, BHlthSc(Hons), Dr

  • The University of Western Australia (M316), 35 Stirling Highway,

    6009 Perth

    Australia

  • 50 Citations
  • 4 h-Index
20162018
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  • 9 Similar Profiles
DNA Methylation Medicine & Life Sciences
Epigenomics Medicine & Life Sciences
Placentation Medicine & Life Sciences
Genome Medicine & Life Sciences
Stem cells Chemical Compounds
Cytosine Medicine & Life Sciences
Methylation Medicine & Life Sciences
Induced Pluripotent Stem Cells Medicine & Life Sciences

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Projects 2016 2018

Research Output 2016 2018

  • 50 Citations
  • 4 h-Index
  • 10 Article
  • 1 Chapter
  • 1 Literature review

Approaches for the analysis and interpretation of whole genome bisulfite sequencing data

Stuart, T., Buckberry, S. & Lister, R., 2018, Epigenome Editing: Methods and Protocols. Jeltsch, A. & Rots, M. G. (eds.). New York: Springer, Vol. 1767, p. 299-310 12 p. (Methods in Molecular Biology)

Research output: Chapter in Book/Conference paperChapter

DNA Methylation
Genome
Cytosine
DNA Transposable Elements
DNA

MsgbsR: An R package for analysing methylation-sensitive restriction enzyme sequencing data

Mayne, B. T., Leemaqz, S. Y., Buckberry, S., Rodriguez Lopez, C. M., Roberts, C. T., Bianco-Miotto, T. & Breen, J., 1 Dec 2018, In : Scientific Reports. 8, 1, 2190

Research output: Contribution to journalArticle

Open Access
Methylation
DNA Methylation
Enzymes
Genome
RNA Sequence Analysis

Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons

De Mendoza, A., Bonnet, A., Vargas-Landin, D. B., Ji, N., Hong, F., Yang, F., Li, L., Hori, K., Pflueger, J., Buckberry, S., Ohta, H., Rosic, N., Lesage, P., Lin, S. & Lister, R., 1 Dec 2018, In : Nature Communications. 9, 1, 03724

Research output: Contribution to journalArticle

Open Access
Retroelements
methylation
Cytosine
Methyltransferases
eukaryotes
3 Citations

Cell Type of Origin Dictates the Route to Pluripotency

Nefzger, C. M., Rossello, F. J., Chen, J., Liu, X., Knaupp, A. S., Firas, J., Paynter, J. M., Pflueger, J., Buckberry, S., Lim, S. M., Williams, B., Alaei, S., Faye-Chauhan, K., Petretto, E., Nilsson, S. K., Lister, R., Ramialison, M., Powell, D. R., Rackham, O. J. L. & Polo, J. M., 5 Dec 2017, In : Cell Reports. 21, 10, p. 2649-2660 12 p.

Research output: Contribution to journalArticle

Open Access
Fibroblasts
Stem cells
Induced Pluripotent Stem Cells
Epithelial-Mesenchymal Transition
Keratinocytes
1 Citations

Epigenomic Landscapes of hESC-Derived Neural Rosettes: Modeling Neural Tube Formation and Diseases

Valensisi, C., Andrus, C., Buckberry, S., Doni Jayavelu, N., Lund, R. J., Lister, R. & Hawkins, R. D., 8 Aug 2017, In : Cell Reports. 20, 6, p. 1448-1462 15 p.

Research output: Contribution to journalArticle

Open Access
Neural Tube
Stem cells
Epigenomics
Neural Tube Defects
Folic Acid

Datasets

GSM2043612: villous_S15

Buckberry, S. (Creator), Roberts, C. T. (Creator), Gene Expression Omnibus (NCBI), 31 Aug 2016

Dataset

GSM2043602: villous_S5

Buckberry, S. (Creator), Roberts, C. T. (Creator), Gene Expression Omnibus (NCBI), 31 Aug 2016

Dataset

GSM2043606: villous_S9

Buckberry, S. (Creator), Roberts, C. T. (Creator), Gene Expression Omnibus (NCBI), 31 Aug 2016

Dataset

GSM2043604: villous_S7

Buckberry, S. (Creator), Roberts, C. T. (Creator), Gene Expression Omnibus (NCBI), 31 Aug 2016

Dataset

GSM2043608: villous_S11

Buckberry, S. (Creator), Roberts, C. T. (Creator), Gene Expression Omnibus (NCBI), 31 Aug 2016

Dataset