Research output per year
Research output per year
Personal profile
Research
I lead a research group investigating the epigenome and cell identity, at the University of Western Australia and the Harry Perkins Institute of Medical Research. After receiving my PhD from UWA in 2005, I undertook postdoctoral studies at The Salk Institute for Biological Studies, where I developed and applied new techniques to map the epigenome and transcriptome. Having returned to UWA in 2012, my laboratory is focused upon understanding the role of the epigenome in regulation of cell identity, and developing molecular tools to precisely edit the epigenome and transcriptional activity to control cell state and functions.
Previous positions
2009-2011: California Institute for Regenerative Medicine Postdoctoral Trainee (Joseph Ecker), The Salk Institute for Biological Studies, La Jolla, CA, USA.
2006-2009: Human Frontier Science Project Postdoctoral Fellow (Joseph Ecker), The Salk Institute for Biological Studies, La Jolla, CA, USA.
2005-2006: Postdoctoral Fellow (James Whelan), Department of Biochemistry and Molecular Biology, The University of Western Australia, Perth, Australia.
2001-2005: Ph.D. (James Whelan), Department of Biochemistry and Molecular Biology, The University of Western Australia, Perth, Australia.
2006-2009: Human Frontier Science Project Postdoctoral Fellow (Joseph Ecker), The Salk Institute for Biological Studies, La Jolla, CA, USA.
2005-2006: Postdoctoral Fellow (James Whelan), Department of Biochemistry and Molecular Biology, The University of Western Australia, Perth, Australia.
2001-2005: Ph.D. (James Whelan), Department of Biochemistry and Molecular Biology, The University of Western Australia, Perth, Australia.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Research expertise keywords
- Epigenetics
- Epigenomics
- DNA methylation
- Genomics (plant, animal)
- Stem cells
- Induced pluripotent stem cells
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Advancing programmable gene expression in plants using CRISPRi-based Boolean gates
Khan, A. & Lister, R., 20 May 2024, In: Nature Biotechnology. 2 p.Research output: Contribution to journal › Article
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A modular dCas9-based recruitment platform for combinatorial epigenome editing
Swain, T., Pflueger, C., Freytag, S., Poppe, D., Pflueger, J., Nguyen, T. V., Li, J. K. & Lister, R., 11 Jan 2024, In: Nucleic Acids Research. 52, 1, p. 474-491 18 p., gkad1108.Research output: Contribution to journal › Article › peer-review
Open Access7 Citations (Scopus) -
Approaches for the Analysis and Interpretation of Whole-Genome Bisulfite Sequencing Data
Stuart, T., Buckberry, S., Nguyen, T. V. & Lister, R., 2024, Epigenome Editing: Methods and Protocols. Jeltsch, A. & Rots, M. G. (eds.). 2 ed. Humana Press Inc., p. 391-403 13 p. (Methods in Molecular Biology; vol. 2842).Research output: Chapter in Book/Conference paper › Chapter › peer-review
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CRISPRi-based circuits to control gene expression in plants
Khan, M. A., Herring, G., Zhu, J. Y., Oliva, M., Fourie, E., Johnston, B., Zhang, Z., Potter, J., Pineda, L., Pflueger, J., Swain, T., Pflueger, C., Lloyd, J. P. B., Secco, D., Small, I., Kidd, B. N. & Lister, R., 20 May 2024, (E-pub ahead of print) In: Nature Biotechnology. 20 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
Early moderate prenatal alcohol exposure and maternal diet impact offspring DNA methylation across species
Bestry, M., Larcombe, A. N., Kresoje, N., Chivers, E. K., Bakker, C., Fitzpatrick, J. P., Elliott, E. J., Craig, J. M., Muggli, E., Halliday, J., Hutchinson, D., Buckberry, S., Lister, R., Symons, M. & Martino, D., 6 Sept 2024, In: eLife. 12Research output: Contribution to journal › Article › peer-review
Open Access
Datasets
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Transient naive reprogramming corrects hiPS cells functionally and epigenetically [ATAC-seq]
Buckberry, S. (Contributor), Liu, X. (Contributor), Poppe, D. (Contributor), Tan, J. P. (Contributor), Polo, J. M. (Contributor) & Lister, R. (Contributor), Gene Expression Omnibus (NCBI), 11 Aug 2023
DOI: 10.26182/0pkj-m839, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE178779
Dataset
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CRISPRi-based circuits for genetic computation in plants
Khan, A. (Creator), Herring, G. (Creator), Zhu, J. Y. (Creator), Oliva, M. (Creator), Fourie, E. (Creator), Johnston, B. (Creator), Zhang, Z. (Creator), Potter, J. (Creator), Pineda, L. (Creator), Pflueger, J. (Creator), Swain, T. (Creator), Pflueger, C. (Creator), Lloyd, J. (Creator), Secco, D. (Creator), Small, I. (Creator), Kidd, B. (Creator) & Lister, R. (Creator), Zenodo, 18 Jan 2024
DOI: 10.5281/zenodo.10528436, https://zenodo.org10528436
Dataset
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Transient and permanent reconfiguration of chromatin and transcription factor occupancy drive reprogramming. Knaupp & Buckberry et. al.
Buckberry, S. (Creator), Knaupp, A. (Creator), Lister, R. (Creator) & Polo, J. M. (Creator), Mendeley Data, 8 Jan 2018
DOI: 10.17632/55v99jz2yy.3, https://data.mendeley.com/datasets/55v99jz2yy
Dataset
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Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution
Herring, C. (Creator), Simmons, R. (Creator), Freytag, S. (Creator), Poppe, D. (Creator), Buckberry, S. (Creator), Martelotto, L. (Creator) & Lister, R. (Creator), Gene Expression Omnibus (NCBI), 31 Oct 2022
DOI: 10.26182/68b8-jd43, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE168408
Dataset
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A modular dCas9-based recruitment platform for combinatorial epigenome editing
Swain, T. (Creator), Pflueger, C. (Creator), Freytag, S. (Creator), Poppe, D. (Creator), Pflueger, J. (Creator), Nguyen, T. V. (Creator), Li, J. K. (Creator) & Lister, R. (Creator), The University of Western Australia, 17 Jan 2024
DOI: 10.26182/v862-2215, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241460
Dataset
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ARC Centre of Excellence in Plants for Space
Small, I., Millar, H. & Lister, R.
ARC Australian Research Council
1/01/24 → 31/12/30
Project: Research
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Advancing plant synthetic gene circuit capability, robustness, and use
Lister, R., Lloyd, J., Reeve, W. & Ardley, J.
ARC Australian Research Council
1/01/24 → 31/12/26
Project: Research
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Enhancing adoptive cell therapy protocols to improve childhood and adolescent cancer control
Lister, R., Darcy, P., Beavis, P., Khaw, S., Velickovic, Z., Bosco, A., Armitage, J., Pflueger, C., Foley, B., Carnley, B., Wood, M., Woulfe, C., Herring, C. & Waithman, J.
Department of Health (Western Australia)
1/01/24 → 31/12/25
Project: Research
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Genomics WA NCRIS 2023 stage 1 OPEX
Saxena, A., Forrest, A., Lister, R., Kahler, C. & Martino, D.
1/07/23 → 30/06/28
Project: Research
Courses
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SCIE5508: Synthetic Biology - Solving Global Challenges
Georg Fritz, Heng Chooi, Ryan Lister & Ian Small 27/07/20 → …
Course
Press/Media
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DUG Technology Ltd: Harry Perkins Institute of Medical Research increases big data analysis with DUG McCloud partnership
Ryan Lister & Alistair Forrest
31/10/20
1 item of Media coverage
Press/Media: Press / Media
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Funding boost for mental health support in schools
Ryan Lister, Andrew J. O. Whitehouse & Jonathan Carapetis
29/08/19
1 item of Media coverage
Press/Media: Press / Media