Rajeev Varshney

Dr

  • The University of Western Australia (M084), 35 Stirling Highway,

    6009 Crawley

    Australia

  • 1878 Citations
  • 24 h-Index
20102018
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Research Output 2010 2018

2018
2 Citations

Development and evaluation of high-density Axiom®CicerSNP Array for high-resolution genetic mapping and breeding applications in chickpea

Roorkiwal, M., Jain, A., Kale, S. M., Doddamani, D., Chitikineni, A., Thudi, M. & Varshney, R. K. 1 Apr 2018 In : Plant Biotechnology Journal. 16, 4, p. 890-901 12 p.

Research output: Contribution to journalArticle

Open Access
Cicer
genotyping
chromosome mapping
Breeding
Single Nucleotide Polymorphism

Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea

Kaashyap, M., Ford, R., Kudapa, H., Jain, M., Edwards, D., Varshney, R. & Mantri, N. 1 Dec 2018 In : Scientific Reports. 8, 1, 4855

Research output: Contribution to journalArticle

Open Access
Cicer
Salinity
Morphogenesis
Cell Wall
Salts
3 Citations

Identification of QTLs for resistance to Fusarium wilt and Ascochyta blight in a recombinant inbred population of chickpea (Cicer arietinum L.)

Garg, T., Mallikarjuna, B. P., Thudi, M., Samineni, S., Singh, S., Sandhu, J. S., Kaur, L., Singh, I., Sirari, A., Basandrai, A. K., Basandrai, D., Varshney, R. K. & Gaur, P. M. 1 Mar 2018 In : Euphytica. 214, 3, 45

Research output: Contribution to journalArticle

Cicer
Ascochyta
Fusarium wilt
Quantitative Trait Loci
Fusarium

Molecular mapping and inheritance of restoration of fertility (Rf) in A4 hybrid system in pigeonpea (Cajanus cajan (L.) Millsp.)

Saxena, R. K., Patel, K., Sameer Kumar, C. V., Tyagi, K., Saxena, K. B. & Varshney, R. K. 1 Aug 2018 In : Theoretical and Applied Genetics. 131, 8, p. 1605-1614 10 p.

Research output: Contribution to journalArticle

Open Access
Cajanus
restorer lines
Cajanus cajan
chromosome mapping
Fertility
2017

Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization

Nayak, S. N., Agarwal, G., Pandey, M. K., Sudini, H. K., Jayale, A. S., Purohit, S., Desai, A., Wan, L., Guo, B., Liao, B. & Varshney, R. K. 1 Dec 2017 In : Scientific Reports. 7, 1, 9659

Research output: Contribution to journalArticle

Open Access
Aspergillus flavus
Seeds
Infection
Genes
Aflatoxins
3 Citations

Construction of genotyping-by-sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea

Saxena, R. K., Singh, V. K., Kale, S. M., Tathineni, R., Parupalli, S., Kumar, V., Garg, V., Das, R. R., Sharma, M., Yamini, K. N., Muniswamy, S., Ghanta, A., Rathore, A., Kumar, C. V. S., Saxena, K. B., Kishor, P. B. K. & Varshney, R. K. 1 Dec 2017 In : Scientific Reports. 7, 1, 1911

Research output: Contribution to journalArticle

Open Access
Quantitative Trait Loci
Fusarium
Genomics
Breeding
Single Nucleotide Polymorphism
21 Citations

Development and Evaluation of a High Density Genotyping 'Axiom-Arachis' Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut

Pandey, M. K., Agarwal, G., Kale, S. M., Clevenger, J., Nayak, S. N., Sriswathi, M., Chitikineni, A., Chavarro, C., Chen, X., Upadhyaya, H. D., Vishwakarma, M. K., Leal-Bertioli, S., Liang, X., Bertioli, D. J., Guo, B., Jackson, S. A., Ozias-Akins, P. & Varshney, R. K. 16 Jan 2017 In : Scientific Reports. 7, 40577

Research output: Contribution to journalArticle

Open Access
Breeding
Single Nucleotide Polymorphism
Diploidy
DNA Shuffling
Genome
2 Citations

Food Legumes and Rising Temperatures: Effects, Adaptive Functional Mechanisms Specific to Reproductive Growth Stage and Strategies to Improve Heat Tolerance

Sita, K., Sehgal, A., HanumanthaRao, B., Nair, R. M., Prasad, P. V. V., Kumar, S., Gaur, P. M., Farroq, M., Siddique, K. H. M., Varshney, R. K. & Nayyar, H. 4 Oct 2017 In : Frontiers in Plant Science. 8, 30 p., 1658

Research output: Contribution to journalReview article

Open Access
2 Citations

Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation

Pazhamala, L. T., Purohit, S., Saxena, R. K., Garg, V., Krishnamurthy, L., Verdier, J. & Varshney, R. K. 1 Apr 2017 In : Journal of Experimental Botany. 68, 8, p. 2037-2054 18 p.

Research output: Contribution to journalArticle

Open Access
Cajanus
Atlases
Cajanus cajan
Pollen
Fertility

Genetic variations of HvP5CS1 and their association with drought tolerance related traits in barley (Hordeum vulgare L.)

Xia, Y., Li, R., Bai, G., Siddique, K. H. M., Varshney, R. K., Baum, M., Yan, G. & Guo, P. 11 Aug 2017 In : Scientific Reports. 7, 10 p., 7870

Research output: Contribution to journalArticle

Open Access

Genome-wide discovery and deployment of insertions and deletions markers provided greater insights on species, genomes, and sections relationships in the genus arachis

Vishwakarma, M. K., Kale, S. M., Sriswathi, M., Naresh, T., Shasidhar, Y., Garg, V., Pandey, M. K. & Varshney, R. K. 19 Dec 2017 In : Frontiers in Plant Science. 8, 2064

Research output: Contribution to journalArticle

Open Access
Arachis
genome
peanuts
genetic techniques and protocols
genome assembly

Genome-wide identification, characterization, and expression analysis of small RNA biogenesis purveyors reveal their role in regulation of biotic stress responses in three legume crops

Garg, V., Agarwal, G., Pazhamala, L. T., Nayak, S. N., Kudapa, H., Khan, A. W., Doddamani, D., Sharma, M., Kavi Kishor, P. B. & Varshney, R. K. 25 Apr 2017 In : Frontiers in Plant Science. 8, 488

Research output: Contribution to journalArticle

Open Access
biotic stress
stress response
legumes
RNA
genome
4 Citations

Genotypic variation in soil water use and root distribution and their implications for drought tolerance in chickpea

Purushothaman, R., Krishnamurthy, L., Upadhyaya, H. D., Vadez, V. & Varshney, R. K. 2017 In : Functional Plant Biology. 44, 2, p. 235-252 18 p.

Research output: Contribution to journalArticle

Open Access
drought tolerance
drought
water uptake
soil water
soil depth
3 Citations

Genotyping-by-sequencing of three mapping populations for identification of candidate genomic regions for resistance to sterility mosaic disease in pigeonpea

Saxena, R. K., Kale, S. M., Kumar, V., Parupali, S., Joshi, S., Singh, V. K., Garg, V., Das, R. R., Sharma, M., Yamini, K. N., Ghanta, A., Rathore, A., Sameerkumar, C. V., Saxena, K. B. & Varshney, R. K. 1 Dec 2017 In : Scientific Reports. 7, 1, 1813

Research output: Contribution to journalArticle

Open Access
Infertility
Single Nucleotide Polymorphism
Population
DNA Shuffling
Disease Resistance
3 Citations

Indel-seq: A fast-forward genetics approach for identification of trait-associated putative candidate genomic regions and its application in pigeonpea (Cajanus cajan)

Singh, V. K., Khan, A. W., Saxena, R. K., Sinha, P., Kale, S. M., Parupalli, S., Kumar, V., Chitikineni, A., Vechalapu, S., Sameer Kumar, C. V., Sharma, M., Ghanta, A., Yamini, K. N., Muniswamy, S. & Varshney, R. K. Jul 2017 In : Plant Biotechnology Journal. 15, 7, p. 906–914

Research output: Contribution to journalArticle

Open Access
Cajanus
Cajanus cajan
Fusarium wilt
Fusarium
Infertility
1 Citations

Molecular mapping of flowering time major genes and QTLs in chickpea (Cicer arietinum L.)

Mallikarjuna, B. P., Samineni, S., Thudi, M., Sajja, S. B., Khan, A. W., Patil, A., Viswanatha, K. P., Varshney, R. K. & Gaur, P. M. 6 Jul 2017 In : Frontiers in Plant Science. 8, 1140

Research output: Contribution to journalArticle

Open Access
major genes
Cicer arietinum
chromosome mapping
quantitative trait loci
flowering
1 Citations

Molecular mapping of oil content and fatty acids using dense genetic maps in groundnut (Arachis hypogaea L.)

Shasidhar, Y., Vishwakarma, M. K., Pandey, M. K., Janila, P., Variath, M. T., Manohar, S. S., Nigam, S. N., Guo, B. & Varshney, R. K. 22 May 2017 In : Frontiers in Plant Science. 8, 794

Research output: Contribution to journalArticle

Open Access
Arachis hypogaea
chromosome mapping
peanuts
quantitative trait loci
lipid content
12 Citations

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments

Varshney, R. K. , Shi, C. , Thudi, M. , Mariac, C. , Wallace, J. , Qi, P. , Zhang, H. , Zhao, Y. , Wang, X. , Rathore, A. , Srivastava, R. K. , Chitikineni, A. , Fan, G. , Bajaj, P. , Punnuri, S. , Gupta, S. K. , Wang, H. , Jiang, Y. , Couderc, M. , Katta, M. A. V. S. K. & 45 others Paudel, D. R., Mungra, K. D., Chen, W., Harris-Shultz, K. R., Garg, V., Desai, N., Doddamani, D., Kane, N. A., Conner, J. A., Ghatak, A., Chaturvedi, P., Subramaniam, S., Yadav, O. P., Berthouly-Salazar, C., Hamidou, F., Wang, J., Liang, X., Clotault, J., Upadhyaya, H. D., Cubry, P., Rhoné, B., Gueye, M. C., Sunkar, R., Dupuy, C., Sparvoli, F., Cheng, S., Mahala, R. S., Singh, B., Yadav, R. S., Lyons, E., Datta, S. K., Tom Hash, C., Devos, K. M., Buckler, E., Bennetzen, J. L., Paterson, A. H., Ozias-Akins, P., Grando, S., Wang, J., Mohapatra, T., Weckwerth, W., Reif, J. C., Liu, X., Vigouroux, Y. & Xu, X. 1 Oct 2017 In : Nature Biotechnology. 35, 10, p. 969-976 8 p.

Research output: Contribution to journalArticle

Open Access
Pennisetum
Cenchrus
Genes
Genome
Crops
12 Citations

QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.)

Pandey, M. K., Khan, A. W., Singh, V. K., Vishwakarma, M. K., Shasidhar, Y., Kumar, V., Garg, V., Bhat, R. S., Chitikineni, A., Janila, P., Guo, B. & Varshney, R. K. Aug 2017 In : Plant Biotechnology Journal. 15, 8, p. 927–941

Research output: Contribution to journalArticle

Open Access
leaf spot
Arachis hypogaea
Single Nucleotide Polymorphism
peanuts
quantitative trait loci
1 Citations

Root traits confer grain yield advantages under terminal drought in chickpea (Cicer arietinum L.)

Ramamoorthy, P., Lakshmanan, K., Upadhyaya, H. D., Vadez, V. & Varshney, R. K. 1 Feb 2017 In : Field Crops Research. 201, p. 146-161 16 p.

Research output: Contribution to journalArticle

Open Access
Cicer arietinum
grain yield
drought
root-shoot ratio
root shoot ratio
9 Citations

Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits

Varshney, R. K., Saxena, R. K., Upadhyaya, H. D., Khan, A. W., Yu, Y., Kim, C., Rathore, A., Kim, D., Kim, J., An, S., Kumar, V., Anuradha, G., Yamini, K. N., Zhang, W., Muniswamy, S., Kim, J-S., Penmetsa, R. V., von Wettberg, E. & Datta, S. K. Jul 2017 In : Nature Genetics. 49, 7, p. 1082-1088 9 p.

Research output: Contribution to journalArticle

2016
8 Citations

Analytical and decision support tools for genomics-assisted breeding

Varshney, R., Singh, V. K., Hickey, J. M., Xun, X., Marshall, D. F., Wang, J., Edwards, D. & Ribaut, J. Apr 2016 In : Trends in Plant Science. 21, 4, p. 354-363

Research output: Contribution to journalReview article

Open Access
genomics
phenotype
breeding
haplotypes
crops
16 Citations

Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

Williams, A. H. , Sharma, M. , Thatcher, L. F. , Azam, S. , Hane, J. K. , Sperschneider, J. , Kidd, B. N. , Anderson, J. P. , Ghosh, R. , Garg, G. , Lichtenzveig, J. , Kistler, H. C. , Shea, T. , Young, S. , Buck, S. A. G. , Kamphuis, L. G. , Saxena, R. , Pande, S. , Ma, L. J. , Varshney, R. K. & 1 others Singh, K. B. Mar 2016 In : BMC Genomics. 17, 1, 191

Research output: Contribution to journalArticle

Open Access
Fusarium
Genomics
Fabaceae
Virulence
Peas
4 Citations

Deciphering transcriptional programming during pod and seed development using RNA-seq in pigeonpea (Cajanus cajan)

Pazhamala, L. T., Agarwal, G., Bajaj, P., Kumar, V., Kulshreshtha, A., Saxena, R. K. & Varshney, R. K. 1 Oct 2016 In : PLoS One. 11, 10, e0164959

Research output: Contribution to journalArticle

Open Access
Cajanus
Cajanus cajan
seed development
Seed
pods
38 Citations

Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens

Chen, X. , Li, H. , Pandey, M. K. , Yang, Q. , Wang, X. , Garg, V. , Chi, X. , Doddamani, D. , Hong, Y. , Upadhyaya, H. , Guo, H. , Khan, A. W. , Zhu, F. , Zhang, X. , Pan, L. , Pierce, G. J. , Zhou, G. , Krishnamohan, K. A. V. S. , Chen, M. , Zhong, N. & 27 others Agarwal, G., Li, S., Chitikineni, A., Zhang, G. Q., Sharma, S., Chen, N., Liu, H., Janila, P., Wang, M., Wang, T., Sun, J., Li, X., Li, C., Yu, L., Wen, S., Singh, S., Yang, Z., Zhao, J., Zhang, C., Yu, Y., Bi, J., Liu, Z. J., Paterson, A. H., Wang, S., Liang, X., Varshney, R. K. & Yu, S. Jun 2016 In : Proceedings of the National Academy of Sciences of the United States of America. 113, 24, p. 6785-6790

Research output: Contribution to journalArticle

Open Access
Allergens
Oils
Genome
Seeds
Arachis
28 Citations

Emerging genomic tools for legume breeding: Current status and future prospects

Pandey, M. K., Roorkiwal, M., Singh, V. K., Ramalingam, A., Kudapa, H., Thudi, M., Chitikineni, A., Rathore, A. & Varshney, R. K. 2 May 2016 In : Frontiers in Plant Science. 7, 455

Research output: Contribution to journalReview article

Open Access
legumes
genomics
breeding
food security
crops
8 Citations

First-generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations

Kumar, V., Khan, A. W., Saxena, R. K., Garg, V. & Varshney, R. K. Aug 2016 In : Plant Biotechnology Journal. 14, 8, p. 1673-1681

Research output: Contribution to journalArticle

Open Access
Cajanus
HapMap Project
Genome
Single Nucleotide Polymorphism
genome
9 Citations

Genome-enabled prediction models for yield related traits in chickpea

Roorkiwal, M., Rathore, A., Das, R. R., Singh, M. K., Jain, A., Srinivasan, S., Gaur, P. M., Chellapilla, B., Tripathi, S., Li, Y., Hickey, J. M., Lorenz, A., Sutton, T., Crossa, J., Jannink, J. L. & Varshney, R. K. Nov 2016 In : Frontiers in Plant Science. 7, p. article number 1666

Research output: Contribution to journalArticle

Open Access
marker-assisted selection
genotyping
genome
prediction
seed yield
14 Citations

Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea

Agarwal, G., Garg, V., Kudapa, H., Doddamani, D., Pazhamala, L. T., Khan, A. W., Thudi, M., Lee, S. H. & Varshney, R. Jul 2016 In : Plant Biotechnology Journal. 14, 7, p. 1563-1577

Research output: Contribution to journalArticle

Open Access
Cicer
HSP90 Heat-Shock Proteins
Fabaceae
Dissection
ethylene
29 Citations

Global agricultural intensification during climate change: a role for genomics

Abberton, M. , Batley, J. , Bentley, A. , Bryant, J. , Cai, H. , Cockram, J. , Costa De Oliveira, A. , Cseke, L. J. , Dempewolf, H. , De Pace, C. , Edwards, D. , Gepts, P. , Greenland, A. , Hall, A. E. , Henry, R. , Hori, K. , Howe, G. T. , Hughes, S. , Humphreys, M. , Lightfoot, D. & 10 others Marshall, A., Mayes, S., Nguyen, H. T., Ogbonnaya, F. C., Ortiz, R., Paterson, A. H., Tuberosa, R., Valliyodan, B., Varshney, R. & Yano, M. Apr 2016 In : Plant Biotechnology Journal. 14, 4, p. 1095–1098

Research output: Contribution to journalReview article

Open Access
Climate Change
Genomics
Agriculture
Breeding
specialty crops
5 Citations

Identification and validation of selected universal stress protein domain containing drought-responsive genes in pigeonpea (Cajanus cajan L.)

Sinha, P., Pazhamala, L. T., Singh, V. K., Saxena, R. K., Krishnamurthy, L., Azam, S., Khan, A. W. & Varshney, R. K. Jan 2016 In : Frontiers in Plant Science. 6, 1065

Research output: Contribution to journalArticle

Open Access
Cajanus cajan
drought
genes
proteins
drought tolerance
60 Citations

Neglecting legumes has compromised human health and sustainable food production

Foyer, C. , Lam, H. M. , Nguyen, H. T. , Siddique, K. , Varshney, R. , Colmer, T. , Cowling, W. , Bramley, H. , Mori, T. , Hodgson, J. , Cooper, J. W. , Miller, A. J. , Kunert, K. , Vorster, J. , Cullis, C. , Ozga, J. A. , Wahlqvist, M. L. , Liang, Y. , Shou, H. , Shi, K. & 6 others Yu, J., Fodor, N., Kaiser, B. N., Wong, F. L., Valliyodan, B. & Considine, M. 2 Aug 2016 In : Nature Plants. 2, 8, p. 1-10

Research output: Contribution to journalArticle

Open Access
File
food production
human health
legumes
food security
range improvement
18 Citations

Next-generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea (Cajanus cajan)

Singh, V. K., Khan, A. W., Saxena, R. K., Kumar, V., Kale, S. M., Sinha, P., Chitikineni, A., Pazhamala, L. T., Garg, V., Sharma, M., Sameer Kumar, C. V., Parupalli, S., Vechalapu, S., Patil, S., Muniswamy, S., Ghanta, A., Yamini, K. N., Dharmaraj, P. S. & Varshney, R. K. May 2016 In : Plant Biotechnology Journal. 14, 5, p. 1183-1194

Research output: Contribution to journalArticle

Open Access
Cajanus
Fusarium wilt
Cajanus cajan
Fusarium
Genetic Association Studies
23 Citations

QTL-seq for rapid identification of candidate genes for 100-seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea

Singh, V. K., Khan, A. W., Jaganathan, D., Thudi, M., Roorkiwal, M., Takagi, H., Garg, V., Kumar, V., Chitikineni, A., Gaur, P. M., Sutton, T., Terauchi, R. & Varshney, R. K. Nov 2016 In : Plant Biotechnology Journal. 14, 11, p. 2110-2119

Research output: Contribution to journalArticle

Open Access
Cicer
Plant Roots
Genetic Association Studies
quantitative trait loci
Seeds
7 Citations

Shoot traits and their relevance in terminal drought tolerance of chickpea (Cicer arietinum L.)

Ramamoorthy, P., Lakshmanan, K., Upadhyaya, H., Vadez, V. & Varshney, R. Oct 2016 In : Field Crops Research. 197, p. 10-27

Research output: Contribution to journalArticle

Open Access
Cicer arietinum
drought tolerance
shoot
tolerance
drought
5 Citations

Transcriptome analysis of a new peanut seed coat mutant for the physiological regulatory mechanism involved in seed coat cracking and pigmentation

Wan, L., Li, B., Pandey, M. K., Wu, Y., Lei, Y., Yan, L., Dai, X., Jiang, H., Zhang, J., Wei, G., Varshney, R. K. & Liao, B. 14 Oct 2016 In : Frontiers in Plant Science. 7, OCTOBER, 1491

Research output: Contribution to journalArticle

Open Access
cracking
transcriptomics
pigmentation
peanuts
mutants
14 Citations

Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

Thudi, M., Khan, A. W., Kumar, V., Gaur, P. M., Katta, K., Garg, V., Roorkiwal, M., Samineni, S. & Varshney, R. K. Jan 2016 In : BMC Plant Biology. 16, 1, 10

Research output: Contribution to journalArticle

Open Access
Cicer arietinum
single nucleotide polymorphism
genome
gene deletion
genotype
2015
52 Citations

Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects

Kole, C. , Muthamilarasan, M. , Henry, R. , Edwards, D. , Sharma, R. , Abberton, M. , Batley, J. , Bentley, A. , Blakeney, M. , Bryant, J. , Cai, H. , Cakir, M. , Cseke, L. J. , Cockram, J. , De Oliveira, A. C. , De Pace, C. , Dempewolf, H. , Ellison, S. , Gepts, P. , Greenland, A. & 20 others Hall, A., Hori, K., Hughes, S., Humphreys, M. W., Iorizzo, M., Ismail, A. M., Marshall, A., Mayes, S., Nguyen, H. T., Ogbonnaya, F. C., Ortiz, R., Paterson, A. H., Simon, P. W., Tohme, J., Tuberosa, R., Valliyodan, B., Varshney, R. K., Wullschleger, S. D., Yano, M. & Prasad, M. 11 Aug 2015 In : Frontiers in Plant Science. 6, AUG, p. Article 563

Research output: Contribution to journalArticle

Open Access
climate
genomics
breeding
climate change
crops
8 Citations

Association of nad7a gene with cytoplasmic male sterility in pigeonpea

Sinha, P., Saxena, K. B., Saxena, R. K., Singh, V. K., Suryanarayana, V., Sameer Kumar, C. V., Katta, M. A. V. S., Khan, A. W. & Varshney, R. K. Jul 2015 In : Plant Genome. 8, 2, p. 1-12

Research output: Contribution to journalArticle

Open Access
cytoplasmic male sterility
Male Infertility
Genes
Mitochondrial Genes
genes
4 Citations

CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea

Doddamani, D., Khan, A. W., Katta, M. A. V. S. K., Agarwal, G., Thudi, M., Ruperao, P., Edwards, D. & Varshney, R. K. Aug 2015 In : Database. 2015, 7 p., bav078

Research output: Contribution to journalArticle

Open Access
Cicer
Genetic Research
Nucleotides
Polymorphism
single nucleotide polymorphism
4 Citations

Dentification and evaluation of single-nucleotide polymorphisms in allotetraploid peanut (Arachis hypogaea L.) based on amplicon sequencing combined with high resolution melting (HRM) analysis

Hong, Y., Pandey, M. K., Liu, Y., Chen, X., Liu, H., Varshney, R. K., Liang, X. & Huang, S. 2 Dec 2015 In : Frontiers in Plant Science. 6, p. Article 1068

Research output: Contribution to journalArticle

Open Access
Arachis hypogaea
melting
single nucleotide polymorphism
peanuts
expressed sequence tags
26 Citations

Evaluation and validation of housekeeping genes as reference for gene expression studies in pigeonpea (cajanus cajan ) under drought stress conditions

Sinha, P., Singh, V. K., Suryanarayana, V., Krishnamurthy, L., Saxena, R. K. & Varshney, R. K. 7 Apr 2015 In : PLoS One. 10, 4, p. 1-15 e0122847

Research output: Contribution to journalArticle

Open Access
Cajanus
Drought
Droughts
Cajanus cajan
Essential Genes
6 Citations

Gene expression and yeast two-hybrid studies of 1R-MYB transcription factor mediating drought stress response in chickpea (Cicer arietinum L.)

Ramalingam, A., Kudapa, H., Pazhamala, L. T., Garg, V. & Varshney, R. K. 24 Dec 2015 In : Frontiers in Plant Science. 6, DEC, p. 1-10

Research output: Contribution to journalArticle

Open Access
Cicer arietinum
stress response
water stress
transcription factors
yeasts
56 Citations

Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL-hotspot” region for drought tolerance in chickpea

Jaganathan, D., Thudi, M., Kale, S., Azam, S., Roorkiwal, M., Gaur, P. M., Kishor, P. B. K., Nguyen, H., Sutton, T. & Varshney, R. K. Apr 2015 In : Molecular Genetics and Genomics. 290, 2, p. 559-571

Research output: Contribution to journalArticle

Open Access
Cicer
Droughts
Single Nucleotide Polymorphism
Breeding
Population
21 Citations

High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus

Bayer, P., Ruperao, P., Mason, A. S., Stiller, J., Chan, K., Hayashi, S., Long, Y., Meng, J., Sutton, T., Visendi, P., Varshney, R. K., Batley, J. & Edwards, D. Jun 2015 In : Theoretical and Applied Genetics. 128, 6, p. 1039-1047

Research output: Contribution to journalArticle

Cicer
Gene Conversion
Brassica napus
gene conversion
Cicer arietinum
16 Citations

High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea

Srivastava, S., Zheng, Y., Kudapa, H. B., Jagadeeswaran, G., Hivrale, V., Varshney, R. K. & Sunkara, R. Jun 2015 In : Plant Science. 235, p. 46-57

Research output: Contribution to journalArticle

Open Access
Cicer
High-Throughput Nucleotide Sequencing
Inflorescence
MicroRNAs
microRNA
6 Citations

Identification of a non-redundant set of 202 in silico SSR markers and applicability of a select set in chickpea (Cicer arietinum L.)

Agarwal, G., Sabbavarapu, M. M., Singh, V. K., Thudi, M., Sheelamary, S., Gaur, P. M. & Varshney, R. K. Sep 2015 In : Euphytica. 205, 2, p. 381-394

Research output: Contribution to journalArticle

Open Access
Cicer
Cicer arietinum
Computer Simulation
Microsatellite Repeats
microsatellite repeats
54 Citations

Legume Crops Phylogeny and Genetic Diversity for Science and Breeding

Smýkal, P. , Coyne, C. J. , Ambrose, M. J. , Maxted, N. , Schaefer, H. , Blair, M. W. , Berger, J. , Greene, S. L. , Nelson, M. , Besharat, N. , Vymyslický, T. , Toker, C. , Saxena, R. K. , Roorkiwal, M. , Pandey, M. K. , Hu, J. , Li, Y. H. , Wang, L. X. , Guo, Y. , Qiu, L. J. & 2 others Redden, R. J. & Varshney, R. K. 2015 In : Critical Reviews in Plant Sciences. 34, 1-3, p. 43-104

Research output: Contribution to journalArticle

Open Access
legumes
genetic variation
phylogeny
breeding
Fabaceae
38 Citations

MAGIC populations in crops: current status and future prospects

Huang, B. E., Verbyla, K. L., Verbyla, A. P., Raghavan, C., Singh, V. K., Gaur, P., Leung, H., Varshney, R. & Cavanagh, C. R. Jun 2015 In : Theoretical and Applied Genetics. 128, 6, p. 999-1017

Research output: Contribution to journalArticle

crops
Population
experimental design
Population Genetics
Genetic Association Studies
5 Citations

NGS-QCbox and raspberry for parallel, automated and rapid quality control analysis of large-scale next generation sequencing (Illumina) data

Katta, M. A. V. S. K., Khan, A. W., Doddamani, D., Thudi, M. & Varshney, R. K. 13 Oct 2015 In : PLoS ONE. 10, 10, p. e0139868

Research output: Contribution to journalArticle

Open Access
raspberries
Quality Control
quality control
Quality control
Pipelines