Research output per year
Research output per year
- 1 - 50 out of 75 results
Search results
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2021
Amborella gene presence/absence variation is associated with abiotic stress responses that may contribute to environmental adaptation
Hu, H., Scheben, A., Verpaalen, B., Tirnaz, S., Bayer, P. E., Hodel, R. G. J., Batley, J., Soltis, D. E., Soltis, P. S. & Edwards, D., 30 Jul 2021, In: New Phytologist.Research output: Contribution to journal › Letter › peer-review
Open Access -
Candidate Rlm6 resistance genes against Leptosphaeria. maculans identified through a genome-wide association study in Brassica juncea (L.) Czern
Yang, H., Mohd Saad, N. S., Ibrahim, M. I., Bayer, P. E., Neik, T. X., Severn-Ellis, A. A., Pradhan, A., Tirnaz, S., Edwards, D. & Batley, J., 25 Mar 2021, (E-pub ahead of print) In: Theoretical and Applied Genetics.Research output: Contribution to journal › Article › peer-review
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Current status of structural variation studies in plants
Yuan, Y., Bayer, P. E., Batley, J. & Edwards, D., 7 Jun 2021, (E-pub ahead of print) In: Plant Biotechnology Journal.Research output: Contribution to journal › Review article › peer-review
Open Access3 Citations (Scopus) -
Daisychain: Search and interactive visualisation of homologs in genome assemblies
Schliebs, O., Chan, C. K. K., Bayer, P. E., Petereit, J., Singh, A., Hassani-Pak, K., Batley, J. & Edwards, D., Dec 2021, In: Agronomy. 11, 12, 2587.Research output: Contribution to journal › Article › peer-review
Open Access -
Fast-forward breeding for a food-secure world
Varshney, R. K., Bohra, A., Roorkiwal, M., Barmukh, R., Cowling, W. A., Chitikineni, A., Lam, H-M., Hickey, L. T., Croser, J. S., Bayer, P. E., Edwards, D., Crossa, J., Weckwerth, W., Millar, H., Kumar, A., Bevan, M. W. & Siddique, K. H. M., Dec 2021, In: Trends in Genetics. 37, 12, p. 1124-1136Research output: Contribution to journal › Review article › peer-review
Open Access4 Citations (Scopus) -
Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing
Valliyodan, B., Brown, A. V., Wang, J., Patil, G., Liu, Y., Otyama, P. I., Nelson, R. T., Vuong, T., Song, Q., Musket, T. A., Wagner, R., Marri, P., Reddy, S., Sessions, A., Wu, X., Grant, D., Bayer, P. E., Roorkiwal, M., Varshney, R. K., Liu, X. & 5 others, , 2021, In: Scientific Data. 8, 1, 50.Research output: Contribution to journal › Data article › peer-review
Open Access3 Citations (Scopus) -
Genome-wide identification and evolution of receptor-like kinases (RLKs) and receptor like proteins (RLPs) in Brassica Juncea
Yang, H., Bayer, P. E., Tirnaz, S., Edwards, D. & Batley, J., Jan 2021, In: Biology. 10, 1, p. 1-24 24 p., 17.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
Genotype–Environment mismatch of kelp forests under climate change
Vranken, S., Wernberg, T., Scheben, A., Severn-Ellis, A. A., Batley, J., Bayer, P. E., Edwards, D., Wheeler, D. & Coleman, M. A., 21 May 2021, (E-pub ahead of print) In: Molecular Ecology.Research output: Contribution to journal › Article › peer-review
4 Citations (Scopus) -
High-Throughput Genotyping Technologies in Plant Taxonomy
Danilevicz, M. F., Tay Fernandez, C. G., Marsh, J. I., Bayer, P. E. & Edwards, D., 2021, Molecular Plant Taxonomy: Methods and Protocols. Besse, P. (ed.). 2nd ed. NY: Humana Press, p. 149-166 18 p. (Methods in Molecular Biology; vol. 2222).Research output: Chapter in Book/Conference paper › Chapter › peer-review
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Maize yield prediction at an early developmental stage using multispectral images and genotype data for preliminary hybrid selection
Danilevicz, M. F., Bayer, P. E., Boussaid, F., Bennamoun, M. & Edwards, D., 1 Oct 2021, In: Remote Sensing. 13, 19, 3976.Research output: Contribution to journal › Article › peer-review
Open Access -
Marine heatwaves have minimal influence on the quality of adult Sydney rock oyster flesh
Ewere, E. E., Rosic, N., Bayer, P. E., Ngangbam, A., Edwards, D., Kelaher, B. P., Mamo, L. T. & Benkendorff, K., 15 Nov 2021, In: Science of the Total Environment. 795, 148846.Research output: Contribution to journal › Article › peer-review
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Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids
Bayer, P. E., Scheben, A., Golicz, A. A., Yuan, Y., Faure, S., Lee, H., Chawla, H. S., Anderson, R., Bancroft, I., Raman, H., Lim, Y. P., Robbens, S., Jiang, L., Liu, S., Barker, M. S., Schranz, M. E., Wang, X., King, G. J., Pires, J. C., Chalhoub, B. & 3 others, , 26 Jul 2021, (E-pub ahead of print) In: Plant Biotechnology Journal.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs
Zanini, S. F., Bayer, P. E., Wells, R., Snowdon, R. J., Batley, J., Varshney, R. K., Nguyen, H. T., Edwards, D. & Golicz, A. A., 13 Dec 2021, (E-pub ahead of print) In: Plant Genome.Research output: Contribution to journal › Review article › peer-review
Open Access -
QTL Genetic Mapping Study for Traits Affecting Meal Quality in Winter Oilseed Rape (Brassica Napus L.)
Gacek, K., Bayer, P. E., Anderson, R., Severn-Ellis, A. A., Wolko, J., Łopatyńska, A., Matuszczak, M., Bocianowski, J., Edwards, D. & Batley, J., 11 Aug 2021, In: Genes. 12, 8, 1235.Research output: Contribution to journal › Article › peer-review
Open Access -
Resources for image-based high-throughput phenotyping in crops and data sharing challenges
Danilevicz, M. F., Bayer, P. E., Nestor, B. J., Bennamoun, M. & Edwards, D., Oct 2021, In: Plant Physiology. 187, 2, p. 699-715 17 p.Research output: Contribution to journal › Review article › peer-review
Open Access3 Citations (Scopus) -
Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding
Bayer, P. E., Valliyodan, B., Hu, H., Marsh, J. I., Yuan, Y., Vuong, T. D., Patil, G., Song, Q., Batley, J., Varshney, R. K., Lam, H. M., Edwards, D. & Nguyen, H. T., 24 Jun 2021, (E-pub ahead of print) In: Plant Genome. e20109.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
The application of pangenomics and machine learning in genomic selection in plants
Bayer, P. E., Petereit, J., Danilevicz, M. F., Anderson, R., Batley, J. & Edwards, D., 20 Jul 2021, (E-pub ahead of print) In: Plant Genome.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
The pangenome of banana highlights differences between genera and genomes
Rijzaani, H., Bayer, P. E., Rouard, M., Doležel, J., Batley, J. & Edwards, D., 5 Jul 2021, (E-pub ahead of print) In: The Plant Genome. p. e20100Research output: Contribution to journal › Article › peer-review
Open Access -
2020
Assembly of the non-heading pak choi genome and comparison with the genomes of heading Chinese cabbage and the oilseed yellow sarson
Li, P., Su, T., Zhao, X., Wang, W., Zhang, D., Yu, Y., Bayer, P. E., Edwards, D., Yu, S. & Zhang, F., 7 Dec 2020, (E-pub ahead of print) In: Plant Biotechnology Journal.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
Author Correction: Plant pan-genomes are the new reference (Nature Plants, (2020), 6, 8, (914-920), 10.1038/s41477-020-0733-0)
Bayer, P. E., Golicz, A. A., Scheben, A., Batley, J. & Edwards, D., 2 Nov 2020, In: Nature Plants. p. 914-920 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Characterization of disease resistance genes in the Brassica napus pangenome reveals significant structural variation
Dolatabadian, A., Bayer, P. E., Tirnaz, S., Hurgobin, B., Edwards, D. & Batley, J., Apr 2020, In: Plant Biotechnology Journal. 18, 4, 14 p.Research output: Contribution to journal › Article › peer-review
Open Access27 Citations (Scopus) -
Climate change and the need for agricultural adaptation
Anderson, R., Bayer, P. E. & Edwards, D., Aug 2020, In: Current Opinion in Plant Biology. 56, p. 197-202Research output: Contribution to journal › Review article › peer-review
37 Citations (Scopus) -
Effect of leptosphaeria maculans infection on promoter DNA methylation of defence genes in brassica napus
Tirnaz, S., Merce, C., Bayer, P. E., Severn-Ellis, A. A., Edwards, D. & Batley, J., Aug 2020, In: Agronomy. 10, 8, 1072.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
Frontiers in dissecting and managing brassica diseases: From reference‐based rga candidate identification to building pan‐rgaomes
Zhang, Y., Thomas, W., Bayer, P. E., Edwards, D. & Batley, J., 1 Dec 2020, In: International Journal of Molecular Sciences. 21, 23, p. 1-14 14 p., 8964.Research output: Contribution to journal › Review article › peer-review
Open Access4 Citations (Scopus) -
Genome-wide identification and comparative analysis of resistance genes in Brassica juncea
Inturrisi, F., Bayer, P. E., Yang, H., Tirnaz, S., Edwards, D. & Batley, J., Aug 2020, In: Molecular Breeding. 40, 8, 78.Research output: Contribution to journal › Article › peer-review
4 Citations (Scopus) -
Induced methylation in plants as a crop improvement tool: Progress and perspectives
Mercé, C., Bayer, P. E., Fernandez, C. T., Batley, J. & Edwards, D., Oct 2020, In: Agronomy. 10, 10, 1484.Research output: Contribution to journal › Review article › peer-review
Open Access6 Citations (Scopus) -
Legume pangenome construction using an iterative mapping and assembly approach
Hu, H., Yuan, Y., Bayer, P. E., Fernandez, C. T., Scheben, A., Golicz, A. A. & Edwards, D., 1 Jan 2020, Legume Genomics: Methods and Protocols. Jain, M. & Garg, R. (eds.). New York: Humana Press, Vol. 2107. p. 35-47 13 p. (Methods in Molecular Biology; vol. 2107).Research output: Chapter in Book/Conference paper › Chapter › peer-review
2 Citations (Scopus) -
Machine learning in agriculture: from silos to marketplaces
Bayer, P. E. & Edwards, D., 2 Dec 2020, (E-pub ahead of print) In: Plant Biotechnology Journal.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
Method for Genome-Wide Association Study: A Soybean Example
Anderson, R., Fernandez, C. T., Yuan, Y., Golicz, A. A., Edwards, D. & Bayer, P. E., 2020, Methods in Molecular Biology . Humana, New York, NY, Vol. 2107. p. 147-158 12 p. (Methods in molecular biology (Clifton, N.J.)).Research output: Chapter in Book/Conference paper › Chapter › peer-review
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Pangenomics Comes of Age: From Bacteria to Plant and Animal Applications
Golicz, A. A., Bayer, P. E., Bhalla, P. L., Batley, J. & Edwards, D., Feb 2020, In: Trends in Genetics. 36, 2, p. 132-145 14 p.Research output: Contribution to journal › Review article › peer-review
Open AccessFile35 Citations (Scopus)204 Downloads (Pure) -
Plant pan-genomes are the new reference
Bayer, P. E., Golicz, A. A., Scheben, A., Batley, J. & Edwards, D., 1 Aug 2020, In: Nature Plants. 6, 8, p. 914-920Research output: Contribution to journal › Review article › peer-review
Open AccessFile76 Citations (Scopus)308 Downloads (Pure) -
Plant pangenomics: approaches, applications and advancements
Danilevicz, M. F., Tay Fernandez, C. G., Marsh, J. I., Bayer, P. E. & Edwards, D., Apr 2020, In: Current Opinion in Plant Biology. 54, p. 18-25 8 p.Research output: Contribution to journal › Review article › peer-review
Open AccessFile31 Citations (Scopus)2 Downloads (Pure) -
Resistance gene analogs in the Brassicaceae: Identification, characterization, distribution, and evolution
Tirnaz, S., Bayer, P., Inturrisi, F., Zhang, F., Yang, H., Dolatabadian, A., Neik, T. X., Severn-Ellis, A., Patel, D., Ibrahim, M. I., Pradhan, A., Edwards, D. & Batley, J., Oct 2020, In: Plant Physiology. 184, 2, p. 909–922 14 p.Research output: Contribution to journal › Article › peer-review
Open Access11 Citations (Scopus) -
Trait associations in the pangenome of pigeon pea (Cajanus cajan)
Zhao, J., Bayer, P. E., Ruperao, P., Saxena, R. K., Khan, A. W., Golicz, A. A., Nguyen, H. T., Batley, J., Edwards, D. & Varshney, R. K., 5 Feb 2020, In: Plant Biotechnology Journal.Research output: Contribution to journal › Article › peer-review
Open Access22 Citations (Scopus) -
2019
Adapting legume crops to climate change using genomic approaches
Mousavi-Derazmahalleh, M., Bayer, P. E., Hane, J. K., Babu, V., Nguyen, H. T., Nelson, M. N., Erskine, W., Varshney, R. K., Papa, R. & Edwards, D., 30 Jan 2019, In: Plant Cell and Environment. 42, 1, p. 6-19Research output: Contribution to journal › Review article › peer-review
Open Access27 Citations (Scopus) -
A reference genome for pea provides insight into legume genome evolution
Kreplak, J., Madoui, M. A., Cápal, P., Novák, P., Labadie, K., Aubert, G., Bayer, P. E., Gali, K. K., Syme, R. A., Main, D., Klein, A., Bérard, A., Vrbová, I., Fournier, C., d’Agata, L., Belser, C., Berrabah, W., Toegelová, H., Milec, Z., Vrána, J. & 25 others, , 2 Sep 2019, In: Nature Genetics. 51, 9, p. 1411-1422 12 p.Research output: Contribution to journal › Article › peer-review
Open Access117 Citations (Scopus) -
Construction and comparison of three reference-quality genome assemblies for soybean
Valliyodan, B., Cannon, S. B., Bayer, P. E., Shu, S., Brown, A. V., Ren, L., Jenkins, J., Chung, C. Y-L., Chan, T-F., Daum, C. G., Plott, C., Hastie, A., Baruch, K., Barry, K. W., Huang, W., Patil, G., Varshney, R. K., Hu, H., Batley, J., Yuan, Y. & 10 others, , Dec 2019, In: The Plant Journal. 100, 5, p. 1066-1082 39 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile23 Citations (Scopus)51 Downloads (Pure) -
CropSNPdb: a database of SNP array data for Brassica crops and hexaploid bread wheat
Scheben, A., Verpaalen, B., Lawley, C. T., Chan, C-K. K., Bayer, P. E., Batley, J. & Edwards, D., Apr 2019, In: Plant Journal. 98, 1, p. 142-152 11 p.Research output: Contribution to journal › Article › peer-review
Open Access12 Citations (Scopus) -
Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia
Schneider, M. V., Griffin, P. C., Tyagi, S., Flannery, M., Dayalan, S., Gladman, S., Watson-Haigh, N., Bayer, P. E., Charleston, M., Cooke, I., Cook, R., Edwards, R. J., Edwards, D., Gorse, D., McConville, M., Powell, D., Wilkins, M. R. & Lonie, A., Mar 2019, In: Briefings in Bioinformatics. 20, 2, p. 384-389 6 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
Genetic diversity linked to haplotype variation in the world core collection of Trifolium subterraneum for boron toxicity tolerance provides valuable markers for pasture breeding
Tahghighi, H., Erskine, W., Bennett, R., Bayer, P., Pazos Navarro, M. & Kaur, P., 30 Aug 2019, In: Frontiers in Plant Science. 10, p. 1-19 20 p., 1043.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus)19 Downloads (Pure) -
Genome‐Wide Association Studies in Plants
Anderson, R., Edwards, D., Batley, J. & Bayer, P., 15 Feb 2019, eLS. John Wiley & Sons, p. 1-7 7 p.Research output: Chapter in Book/Conference paper › Chapter › peer-review
File118 Downloads (Pure) -
INDEL variation in the regulatory region of the major flowering time gene LanFTc1 is associated with vernalization response and flowering time in narrow-leafed lupin (Lupinus angustifolius L.)
Taylor, C. M., Kamphuis, L. G., Zhang, W., Garg, G., Berger, J. D., Mousavi-Derazmahalleh, M., Bayer, P. E., Edwards, D., Singh, K. B., Cowling, W. A. & Nelson, M. N., 20 Jan 2019, In: Plant Cell and Environment. 42, 1, p. 174-187Research output: Contribution to journal › Article › peer-review
Open Access25 Citations (Scopus) -
Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics
Mousavi-Derazmahalleh, M., Chang, S., Thomas, G., Derbyshire, M., Bayer, P. E., Edwards, D., Nelson, M. N., Erskine, W., Lopez-Ruiz, F. J., Clements, J. & Hane, J. K., 17 May 2019, In: BMC Genomics. 20, 11 p., 385.Research output: Contribution to journal › Article › peer-review
Open Access6 Citations (Scopus) -
Variation in abundance of predicted resistance genes in the Brassica oleracea pangenome
Bayer, P. E., Golicz, A. A., Tirnaz, S., Chan, C. K. K., Edwards, D. & Batley, J., Apr 2019, In: Plant Biotechnology Journal. 17, 4, p. 789-800 12 p.Research output: Contribution to journal › Article › peer-review
Open Access45 Citations (Scopus) -
2018
Bias in resistance gene prediction due to repeat masking
Bayer, P. E., Edwards, D. & Batley, J., 1 Oct 2018, In: Nature Plants. 4, 10, p. 762-765 4 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile25 Citations (Scopus)35 Downloads (Pure) -
Exploring the genetic and adaptive diversity of a pan-Mediterranean crop wild relative: narrow-leafed lupin
Mousavi-Derazmahalleh, M., Bayer, P. E., Nevado, B., Hurgobin, B., Filatov, D., Kilian, A., Kamphuis, L. G., Singh, K. B., Berger, J. D., Hane, J. K., Edwards, D., Erskine, W. & Nelson, M. N., Apr 2018, In: Theoretical and Applied Genetics. 131, 4, p. 887–901 15 p.Research output: Contribution to journal › Article › peer-review
Open Access23 Citations (Scopus) -
Genome-wide identification and comparative analysis of NBS-LRR resistance genes in Brassica napus
Alamery, S., Tirnaz, S., Bayer, P., Tollenaere, R., Chaloub, B., Edwards, D. & Batley, J., 1 Jan 2018, In: Crop and Pasture Science. 69, S1, p. 79-93 15 p.Research output: Contribution to journal › Conference article › peer-review
Open AccessFile33 Citations (Scopus)214 Downloads (Pure) -
Genomic comparison of two independent seagrass lineages reveals habitat-driven convergent evolution
Lee, H., Golicz, A. A., Bayer, P. E., Severn-Ellis, A. A., Chan, C. K. K., Batley, J., Kendrick, G. A. & Edwards, D., 27 Jun 2018, In: Journal of Experimental Botany. 69, 15, p. 3689-3702 14 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Citations (Scopus) -
High intraspecific diversity of Restorer-of-fertility-like genes in barley
Melonek, J., Zhou, R., Bayer, P. E., Edwards, D., Stein, N. & Small, I., 1 Oct 2018, In: The Plant Journal.Research output: Contribution to journal › Article › peer-review
Open Access15 Citations (Scopus)111 Downloads (Pure) -
Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus
Hurgobin, B., Golicz, A. A., Bayer, P. E., Chan, C-K. K., Tirnaz, S., Dolatabadian, A., Schiessl, S. V., Samans, B., Montenegro, J. D., Parkin, I. A. P., Pires, J. C., Chalhoub, B., King, G. J., Snowdon, R., Batley, J. & Edwards, D., 10 Jan 2018, In: Plant Biotechnology Journal. 16, 7, p. 1265-1274Research output: Contribution to journal › Article › peer-review
Open Access96 Citations (Scopus)