Research Output per year
Personal profile
Biography
In 2015 I finished my PhD at UQ creating a novel genotyping--by-sequencing method called skimGBS. I then moved to UWA to work with the Edwards group on plant breeding using computational methods.
Roles and responsibilities
I'm a postdoctoral researcher in the group of Dave Edwards - I run my own research, help PhD students with their research,
I also run the Hacky Hour, every Friday at the Hackett Hall Cafe at 10am, where we talk code and data and help people with code and data problems: http://twitter.com/hackyhouruwa
I also am a (co-)Head of a EMBL-ABR Node
I also run the Hacky Hour, every Friday at the Hackett Hall Cafe at 10am, where we talk code and data and help people with code and data problems: http://twitter.com/hackyhouruwa
I also am a (co-)Head of a EMBL-ABR Node
Funding overview
UWA Research Collaboration Award, 'Microbe mediated alternative Nitrogen nutrition in Australian seagrasses', $29,950
Industrial relevance
Our group collaborates extensively with international breeding companies such as Bayer CropScience and Intergrain.
Research
Plant genomics, plant pangenomics, computer-assisted breeding programs, Brassica, wheat, legumes, seagrasses
Languages
English
German
French
Japanese
German
French
Japanese
Fingerprint Fingerprint is based on mining the text of the person's scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.
- 9 Similar Profiles
Genome
Medicine & Life Sciences
genome
Agriculture & Biology
Genes
Medicine & Life Sciences
Brassica napus
Medicine & Life Sciences
genes
Agriculture & Biology
Lupinus
Agriculture & Biology
Brassica
Medicine & Life Sciences
Fabaceae
Medicine & Life Sciences
Network
Recent external collaboration on country level. Dive into details by clicking on the dots.
Research Output 2013 2019
3
Citations
(Scopus)
Adapting legume crops to climate change using genomic approaches
Mousavi-Derazmahalleh, M., Bayer, P. E., Hane, J. K., Babu, V., Nguyen, H. T., Nelson, M. N., Erskine, W., Varshney, R. K., Papa, R. & Edwards, D., 30 Jan 2019, In : Plant Cell and Environment. 42, 1, p. 6-19Research output: Contribution to journal › Review article
Open Access
Climate Change
Fabaceae
legumes
climate change
genomics
CropSNPdb: a database of SNP array data for Brassica crops and hexaploid bread wheat
Scheben, A., Verpaalen, B., Lawley, C. T., Chan, C-K. K., Bayer, P. E., Batley, J. & Edwards, D., Apr 2019, In : Plant Journal. 98, 1, p. 142-152 11 p.Research output: Contribution to journal › Article
Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia
Schneider, M. V., Griffin, P. C., Tyagi, S., Flannery, M., Dayalan, S., Gladman, S., Watson-Haigh, N., Bayer, P. E., Charleston, M., Cooke, I., Cook, R., Edwards, R. J., Edwards, D., Gorse, D., McConville, M., Powell, D., Wilkins, M. R. & Lonie, A., Mar 2019, In : Briefings in Bioinformatics. 20, 2, p. 384-389 6 p.Research output: Contribution to journal › Article
Open Access
Biological Science Disciplines
Bioinformatics
Computational Biology
Research Personnel
Research
5
Citations
(Scopus)
INDEL variation in the regulatory region of the major flowering time gene LanFTc1 is associated with vernalization response and flowering time in narrow-leafed lupin (Lupinus angustifolius L.)
Taylor, C. M., Kamphuis, L. G., Zhang, W., Garg, G., Berger, J. D., Mousavi-Derazmahalleh, M., Bayer, P. E., Edwards, D., Singh, K. B., Cowling, W. A. & Nelson, M. N., 20 Jan 2019, In : Plant Cell and Environment. 42, 1, p. 174-187Research output: Contribution to journal › Article
Open Access
Lupinus
Lupinus angustifolius
vernalization
Nucleic Acid Regulatory Sequences
flowering
Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics
Mousavi-Derazmahalleh, M., Chang, S., Thomas, G., Derbyshire, M., Bayer, P. E., Edwards, D., Nelson, M. N., Erskine, W., Lopez-Ruiz, F. J., Clements, J. & Hane, J. K., 17 May 2019, In : BMC Genomics. 20, 11 p., 385.Research output: Contribution to journal › Article
Datasets
Pigeon pea pangenome contig assembly, annotation, SNPs, PAV
Zhao, J. (Creator), Bayer, P. (Creator), Ruperao, P. (Creator), Saxena, R. (Creator), Khan, M. A. W. (Creator), Golicz, A. (Creator), Nguyen, H. (Creator), Batley, J. (Creator), Edwards, D. (Creator), Varshney, R. (Creator), The University of Western Australia, 4 Apr 2019
Dataset
File
Supplementary data for manuscript:"High intraspecific diversity of Restorer-of-fertility-like genes in barley"
Melonek, J. (Creator), Zhou, R. (Creator), Bayer, P. (Creator), Edwards, D. (Creator), Stein, N. (Creator), Small, I. (Creator), The University of Western Australia, 21 Sep 2018
Dataset
File
Assembly and comparison of two closely related Brassica napus genomes
Bayer, P. (Creator), Hurgobin, B. (Creator), Golicz, A. A. (Creator), Chan, C. K. (Creator), Yuan, Y. (Creator), Lee, H. (Creator), Renton, M. (Creator), Meng, J. (Creator), Li, R. (Creator), Long, Y. (Creator), Zou, J. (Creator), Bancroft, I. (Creator), Chalhoub, B. (Creator), King, G. J. (Creator), Batley, J. (Creator), Edwards, D. (Creator), Zenodo, 17 Mar 2017
DOI: 10.5281/zenodo.400371 , https://zenodo.org/record/400371#.WoOpY2f187w
Dataset
Clover v3 assembly
Dudchenko, O. (Creator), Pham, M. (Creator), Lui, C. (Creator), Bayer, P. (Creator), Erskine, W. (Creator), Aiden, E. L. (Creator), Zenodo, 7 Dec 2017
DOI: 10.5281/zenodo.1095215 , https://zenodo.org/record/1095215#.WoOodmf187w
Dataset
Clover v2.0 reference assembly and annotation
Kaur, P. (Creator), Bayer, P. (Creator), Milec, Z. (Creator), Vrána, J. (Creator), Yuan, Y. (Creator), Appels, R. (Creator), Edwards, D. (Creator), Batley, J. (Creator), Nichols, P. (Creator), Erskine, W. (Creator), Doležel, J. (Creator), Zenodo, 27 Oct 2016
DOI: 10.5281/zenodo.161479 , https://zenodo.org/record/161479#.WoOXsmf187x
Dataset
Projects 2018 2018
- 1 Finished
Microbe mediated alternative Nitrogen nutrition in Australian seagrasses
Bayer, P., Fraser, M., Bougoure, J. & Golicz, A.
University of Western Australia
1/01/18 → 31/12/18
Project: Research