• The University of Western Australia (M092), 35 Stirling Highway,

    6009 Perth

    Australia

  • 1026 Citations
  • 12 h-Index
20132019
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Personal profile

Biography

In 2015 I finished my PhD at UQ creating a novel genotyping--by-sequencing method called skimGBS. I then moved to UWA to work with the Edwards group on plant breeding using computational methods.

Roles and responsibilities

I'm a postdoctoral researcher in the group of Dave Edwards - I run my own research, help PhD students with their research,

I also run the Hacky Hour, every Friday at the Hackett Hall Cafe at 10am, where we talk code and data and help people with code and data problems: http://twitter.com/hackyhouruwa

I also am a (co-)Head of a EMBL-ABR Node

Funding overview

UWA Research Collaboration Award, 'Microbe mediated alternative Nitrogen nutrition in Australian seagrasses', $29,950

Industrial relevance

Our group collaborates extensively with international breeding companies such as Bayer CropScience and Intergrain.

Research

Plant genomics, plant pangenomics, computer-assisted breeding programs, Brassica, wheat, legumes, seagrasses

Languages

English
German
French
Japanese

Fingerprint Fingerprint is based on mining the text of the person's scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

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Network Recent external collaboration on country level. Dive into details by clicking on the dots.

Research Output 2013 2019

3 Citations (Scopus)

Adapting legume crops to climate change using genomic approaches

Mousavi-Derazmahalleh, M., Bayer, P. E., Hane, J. K., Babu, V., Nguyen, H. T., Nelson, M. N., Erskine, W., Varshney, R. K., Papa, R. & Edwards, D., 30 Jan 2019, In : Plant Cell and Environment. 42, 1, p. 6-19

Research output: Contribution to journalReview article

Open Access
Climate Change
Fabaceae
legumes
climate change
genomics

CropSNPdb: a database of SNP array data for Brassica crops and hexaploid bread wheat

Scheben, A., Verpaalen, B., Lawley, C. T., Chan, C-K. K., Bayer, P. E., Batley, J. & Edwards, D., Apr 2019, In : Plant Journal. 98, 1, p. 142-152 11 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia

Schneider, M. V., Griffin, P. C., Tyagi, S., Flannery, M., Dayalan, S., Gladman, S., Watson-Haigh, N., Bayer, P. E., Charleston, M., Cooke, I., Cook, R., Edwards, R. J., Edwards, D., Gorse, D., McConville, M., Powell, D., Wilkins, M. R. & Lonie, A., Mar 2019, In : Briefings in Bioinformatics. 20, 2, p. 384-389 6 p.

Research output: Contribution to journalArticle

Open Access
Biological Science Disciplines
Bioinformatics
Computational Biology
Research Personnel
Research
5 Citations (Scopus)
Open Access
Lupinus
Lupinus angustifolius
vernalization
Nucleic Acid Regulatory Sequences
flowering
1 Citation (Scopus)

Variation in abundance of predicted resistance genes in the Brassica oleracea pangenome

Bayer, P. E., Golicz, A. A., Tirnaz, S., Chan, C. K. K., Edwards, D. & Batley, J., Apr 2019, In : Plant Biotechnology Journal. p. 789-800 12 p.

Research output: Contribution to journalArticle

Open Access
Brassica
Brassica oleracea
Genes
genes
Disease Resistance

Datasets

Pigeon pea pangenome contig assembly, annotation, SNPs, PAV

Zhao, J. (Creator), Bayer, P. (Creator), Ruperao, P. (Creator), Saxena, R. (Creator), Khan, M. A. W. (Creator), Golicz, A. (Creator), Nguyen, H. (Creator), Batley, J. (Creator), Edwards, D. (Creator), Varshney, R. (Creator), The University of Western Australia, 4 Apr 2019

Dataset

File

Supplementary data for manuscript:"High intraspecific diversity of Restorer-of-fertility-like genes in barley"

Melonek, J. (Creator), Zhou, R. (Creator), Bayer, P. (Creator), Edwards, D. (Creator), Stein, N. (Creator), Small, I. (Creator), The University of Western Australia, 21 Sep 2018

Dataset

File

Clover v2.0 reference assembly and annotation

Kaur, P. (Creator), Bayer, P. (Creator), Milec, Z. (Creator), Vrána, J. (Creator), Yuan, Y. (Creator), Appels, R. (Creator), Edwards, D. (Creator), Batley, J. (Creator), Nichols, P. (Creator), Erskine, W. (Creator), Doležel, J. (Creator), Zenodo, 27 Oct 2016

Dataset

Projects 2018 2018