Research Output per year
Personal profile
Biography
In 2015 I finished my PhD at UQ creating a novel genotyping--by-sequencing method called skimGBS. I then moved to UWA to work with the Edwards group on plant breeding using computational methods.
Roles and responsibilities
I'm a postdoctoral researcher in the group of Dave Edwards - I run my own research, help PhD students with their research,
I also run the Hacky Hour, every Friday at the Hackett Hall Cafe at 10am, where we talk code and data and help people with code and data problems: http://twitter.com/hackyhouruwa
I also am a (co-)Head of a EMBL-ABR Node
I also run the Hacky Hour, every Friday at the Hackett Hall Cafe at 10am, where we talk code and data and help people with code and data problems: http://twitter.com/hackyhouruwa
I also am a (co-)Head of a EMBL-ABR Node
Funding overview
UWA Research Collaboration Award, 'Microbe mediated alternative Nitrogen nutrition in Australian seagrasses', $29,950
Industrial relevance
Our group collaborates extensively with international breeding companies such as Bayer CropScience and Intergrain.
Research
Plant genomics, plant pangenomics, computer-assisted breeding programs, Brassica, wheat, legumes, seagrasses
Languages
English
German
French
Japanese
German
French
Japanese
Fingerprint Dive into the research topics where Philipp Bayer is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
- 7 Similar Profiles
Genome
Medicine & Life Sciences
genome
Agriculture & Biology
Genes
Medicine & Life Sciences
genes
Agriculture & Biology
Brassica napus
Medicine & Life Sciences
Lupinus
Agriculture & Biology
Trifolium subterraneum
Agriculture & Biology
Brassica
Medicine & Life Sciences
Network
Recent external collaboration on country level. Dive into details by clicking on the dots.
Research Output 2013 2019
5
Citations
(Scopus)
Adapting legume crops to climate change using genomic approaches
Mousavi-Derazmahalleh, M., Bayer, P. E., Hane, J. K., Babu, V., Nguyen, H. T., Nelson, M. N., Erskine, W., Varshney, R. K., Papa, R. & Edwards, D., 30 Jan 2019, In : Plant Cell and Environment. 42, 1, p. 6-19Research output: Contribution to journal › Review article
Open Access
Climate Change
Fabaceae
legumes
climate change
genomics
Construction and comparison of three reference-quality genome assemblies for soybean
Valliyodan, B., Cannon, S. B., Bayer, P. E., Shu, S., Brown, A. V., Ren, L., Jenkins, J., Chung, C. Y-L., Chan, T-F., Daum, C. G., Plott, C., Hastie, A., Baruch, K., Barry, K. W., Huang, W., Patil, G., Varshney, R. K., Hu, H., Batley, J., Yuan, Y. & 10 others, 21 Aug 2019, In : The Plant Journal. 39 p.Research output: Contribution to journal › Article
Glycine soja
genome assembly
Soybeans
Genome
soybeans
CropSNPdb: a database of SNP array data for Brassica crops and hexaploid bread wheat
Scheben, A., Verpaalen, B., Lawley, C. T., Chan, C-K. K., Bayer, P. E., Batley, J. & Edwards, D., Apr 2019, In : Plant Journal. 98, 1, p. 142-152 11 p.Research output: Contribution to journal › Article
Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia
Schneider, M. V., Griffin, P. C., Tyagi, S., Flannery, M., Dayalan, S., Gladman, S., Watson-Haigh, N., Bayer, P. E., Charleston, M., Cooke, I., Cook, R., Edwards, R. J., Edwards, D., Gorse, D., McConville, M., Powell, D., Wilkins, M. R. & Lonie, A., Mar 2019, In : Briefings in Bioinformatics. 20, 2, p. 384-389 6 p.Research output: Contribution to journal › Article
Open Access
Biological Science Disciplines
Bioinformatics
Computational Biology
Research Personnel
Research
Genetic diversity linked to haplotype variation in the world core collection of Trifolium subterraneum for boron toxicity tolerance provides valuable markers for pasture breeding
Tahghighi, H., Erskine, W., Bennett, R., Bayer, P., Pazos Navarro, M. & Kaur, P., 30 Aug 2019, In : Frontiers in Plant Science. 10, p. 1-19 20 p., 1043.Research output: Contribution to journal › Article
Open Access
Trifolium subterraneum
boron
haplotypes
pastures
toxicity
Datasets
Pigeon pea pangenome contig assembly, annotation, SNPs, PAV
Zhao, J. (Creator), Bayer, P. (Creator), Ruperao, P. (Creator), Saxena, R. (Creator), Khan, M. A. W. (Creator), Golicz, A. (Creator), Nguyen, H. (Creator), Batley, J. (Creator), Edwards, D. (Creator), Varshney, R. (Creator), The University of Western Australia, 4 Apr 2019
Dataset
File
Supplementary data for manuscript:"High intraspecific diversity of Restorer-of-fertility-like genes in barley"
Melonek, J. (Creator), Zhou, R. (Creator), Bayer, P. (Creator), Edwards, D. (Creator), Stein, N. (Creator), Small, I. (Creator), The University of Western Australia, 21 Sep 2018
Dataset
File
Repbase repeats and R-gene domains contained therein
Bayer, P. (Creator), Zenodo, 13 Feb 2018
DOI: 10.5281/zenodo.1172258, https://zenodo.org/record/1172258#.WoPMOWf187w
Dataset
Assembly and comparison of two closely related Brassica napus genomes
Bayer, P. (Creator), Hurgobin, B. (Creator), Golicz, A. A. (Creator), Chan, C. K. (Creator), Yuan, Y. (Creator), Lee, H. (Creator), Renton, M. (Creator), Meng, J. (Creator), Li, R. (Creator), Long, Y. (Creator), Zou, J. (Creator), Bancroft, I. (Creator), Chalhoub, B. (Creator), King, G. J. (Creator), Batley, J. (Creator), Edwards, D. (Creator), Zenodo, 17 Mar 2017
DOI: 10.5281/zenodo.400371 , https://zenodo.org/record/400371#.WoOpY2f187w
Dataset
philippbayer/orthomclToVenn 1.0
Bayer, P. (Creator), Zenodo, 9 Aug 2017
DOI: 10.5281/zenodo.840579, https://zenodo.org/record/840579#.WoO-jGf187w
Dataset
Projects 2018 2018
- 1 Finished
Microbe mediated alternative Nitrogen nutrition in Australian seagrasses
Bayer, P., Fraser, M., Bougoure, J. & Golicz, A.
University of Western Australia
1/01/18 → 31/12/18
Project: Research