Personal profile
Biography
Pankaj Singh is a microbial ecologist who focuses on Plant-microbe interaction and the role of plant microbiome in plant sustenance and stress tolerance. He is currently working as a Postdoctoral research associate as a part of the Soil Science Challenge at the School of Agriculture and Environment. Pankaj has done his PhD from Hawkesbury Institute for the Environment, Western Sydney University after securing a Postgraduate Research Scholarship from Western Sydney University for his PhD. His thesis entitled “Drivers of microbiome assembly in plants” focused on distinct factors involved in governing plant microbiome assembly, especially endophytes across different native and exotic Australian flora ranging from grasses to trees. Pankaj has additionally honed his research skills in plant science and bioinformatics at a premier institute in India, where he designed and conducted experiments, analyzed data, and presented results in a conference and a presentation series.
Research
Pankaj is a microbial ecologist and computational biologist driven by his passion for plant-microbe interactions. His research skills and interest have been focused on the perspective of the three-way interaction between plants, soil, and microbes deciphered using multi-omics approaches such as metagenomics, transcriptomics, and multivariate statistics. Pankaj has a demonstrated interest in plant and soil microbiomes, particularly understanding the ecological process that governs microbiome assembly and how new knowledge can be leveraged to improve ecosystem functions and sustainability.
Teaching overview
Biotechnology in the Natural Environment (ENVT5001)
Science in Practice (SCIE5005)
Community engagement
Pankaj has conducted more than 15 workshops across his career. During his tenure at UWA he has been involved heavily in training higher degree research students in form of workshops. He has coducted 2 workshops for HDR students UWA-School of Agriculture and Environment
- Introductory workshop on data analysis and visualization using R (May 2024)
- Introductory workshop on bioinformatics and microbiome analysis (July 2024)
Education/Academic qualification
Doctor of Philosphy, Drivers and mechanisms of microbiome assembly in plants, Western Sydney University
Oct 2019 → May 2024
External positions
Casual Research Assistant, Western Sydney University
Apr 2023 → Sept 2023
Senior Research Assistant, Bose Institute (Kolkata)
Nov 2016 → Sept 2019
Training in charge & Founder member, The Biome
Jul 2015 → Oct 2016
Guest lecturer, Sikkim Manipal University Distance Education Centre
Apr 2015 → Oct 2016
Project Assistant, Presidency University, Kolkata
Dec 2013 → Jun 2015
Industry keywords
- Agriculture and Food
- Biotechnology
- Bioinformatics
- Environmental
Research expertise keywords
- Bioinformatics
- Microbial ecology/environmental microbiology
- Molecular biology
- Plant-Microbe Interactions
- Transcriptomics
- Soil biology/biochemistry
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 4 Quality Education
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SDG 13 Climate Action
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SDG 15 Life on Land
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Collaborations and top research areas from the last five years
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Integrating soil microbial communities into fundamental ecology, conservation, and restoration: examples from Australia: Ecological Society of Australia (ESA) and Society of Conservation Biology Oceania (SCBO) joint Conference, Wollongong, Australia, 28 November-2 December 2022
Birnbaum, C., Dearnaley, J., Egidi, E., Frew, A., Hopkins, A., Powell, J., Aguilar-Trigueros, C., Liddicoat, C., Albornoz, F., Heuck, M. K., Dadzie, F. A., Florence, L., Singh, P., Mansfield, T., Rajapaksha, K., Stewart, J., Rallo, P., Peddle, S. D. & Chiarenza, G., Feb 2024, In: The New Phytologist. 241, 3, p. 974-981 8 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Link opens in a new tab Citations (Scopus) -
Host selection has a stronger impact on leaf microbiome assembly compared to land‐management practices
Singh, P. K., Egidi, E., Macdonald, C. & Singh, B., Jun 2023, In: Journal of Sustainable Agriculture and Environment. 2, 2, p. 99-111 13 p.Research output: Contribution to journal › Article › peer-review
Open Access7 Link opens in a new tab Citations (Scopus) -
Complex molecular mechanisms underlying MYMIV-resistance in Vigna mungo revealed by comparative transcriptome profiling
Kundu, A., Singh, P., Dey, A., Ganguli, S. & Pal, A., 1 Dec 2019, In: Scientific Reports. 9, 1, 8858.Research output: Contribution to journal › Article › peer-review
Open Access43 Link opens in a new tab Citations (Scopus) -
Co-application of struvite with phosphorus-solubilising bacteria enhances soil microbial activity and bioavailable phosphorus in alkaline soil
Zhang, Z., Gurung, S. K., Sharma, M., O'Connor, J., Singh, P. K., Waite, I., Mickan, B. S., Bolan, N., Abbott, L. K. & Jenkins, S. N., 15 Jan 2026, In: Journal of Environmental Management. 398, 128408.Research output: Contribution to journal › Article › peer-review
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Leaf microbiome assembly is linked to plant phylogeny
Singh, P. K., Martins, C. S. C., Jayaramaiah, R. H., Egidi, E., Macdonald, C., Wang, J., Xiong, C., Batista, B., Qui, G., Reich, P. B., Delgado-Baquerizo, M. & Singh, B. K., Mar 2026, In: Plant and Soil. 520, 2, p. 1177-1192 16 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Link opens in a new tab Citation (Scopus)