Research output per year
Research output per year
- 1 - 50 out of 70 results
Search results
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2023
Slice Transformer and Self-supervised Learning for 6DoF Localization in 3D Point Cloud Maps
Ibrahim, M., Akhtar, N., Anwar, S., Wise, M. & Mian, A., 2023, Proceedings - ICRA 2023: IEEE International Conference on Robotics and Automation. IEEE, Institute of Electrical and Electronics Engineers, p. 11763-11770 8 p. (Proceedings - IEEE International Conference on Robotics and Automation; vol. 2023-May).Research output: Chapter in Book/Conference paper › Conference paper › peer-review
Open Access -
Travel-associated lineages and unique endemic antimicrobial-susceptible lineages of Neisseria gonorrhoeae predominate in Western Australia
Al Suwayyid, B. A., Haese, E. C., Mowlaboccus, S., Pearson, J. C., Whiley, D. M., Armstrong, P. K., Giele, C. M., Mak, D. B., Bastian, L., Wise, M. J., Coombs, G. W. & Kahler, C. M., 29 Mar 2023, In: Microbial Genomics. 9, 3, 14 p., 000969.Research output: Contribution to journal › Article › peer-review
Open Access -
What does not kill you makes you stronger: Interactions between environmental stresses and microbial virulence
Wang, L., Zhan, L. J. & Wise, M. J., 9 Jan 2023, In: Frontiers in Microbiology. 13, 3 p., 1127058.Research output: Contribution to journal › Editorial › peer-review
Open Access -
2022
Deep learning models for RNA secondary structure prediction (probably) do not generalise across families
Szikszai, M., Wise, M. J., Datta, A., Ward, M. & Mathews, D., 15 Aug 2022, In: Bioinformatics. 38, 16, p. 3892-3899 8 p.Research output: Contribution to journal › Article › peer-review
Open Access26 Citations (Scopus) -
From Rags to Enriched: Metagenomic Insights into Ammonia-oxidizing Archaea Following Ammonia Enrichment of a Denuded Oligotrophic Soil Ecosystem
Vuong, P., Moreira-Grez, B., Wise, M. J., Whiteley, A. S., Kumaresan, D. & Kaur, P., Jul 2022, In: Environmental Microbiology. 24, 7, p. 3097-3110 14 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)84 Downloads (Pure) -
Small investments with big returns: environmental genomic bioprospecting of microbial life
Vuong, P., Wise, M. J., Whiteley, A. S. & Kaur, P., 2022, In: Critical Reviews in Microbiology. 48, 5, p. 641-655 15 p.Research output: Contribution to journal › Review article › peer-review
7 Citations (Scopus) -
Ten simple rules for investigating (meta)genomic data from environmental ecosystems
Vuong, P., Wise, M. J., Whiteley, A. S. & Kaur, P., 1 Dec 2022, In: PLoS Computational Biology. 18, 12, p. e1010675 e1010675.Research output: Contribution to journal › Editorial › peer-review
Open Access2 Citations (Scopus) -
2021
Absence of BapA type III effector protein affects Burkholderia pseudomallei intracellular lifecycle in human host cells
Choh, L. C., Ong, G. H., Chua, E. G., Vellasamy, K. M., Mariappan, V., Khan, A. M., Wise, M. J., Wong, K. T. & Vadivelu, J., Sept 2021, In: Process Biochemistry. 108, p. 48-59 12 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
Annotation Tool and Urban Dataset for 3D Point Cloud Semantic Segmentation
Ibrahim, M., Akhtar, N., Wise, M. & Mian, A., 2021, In: IEEE Access. 9, p. 35984-35996 13 p., 9363898.Research output: Contribution to journal › Article › peer-review
Open Access13 Citations (Scopus) -
A re-testing range is recommended for 13C- and 14C-urea breath tests for Helicobacter pylori infection in China
Wang, X., Zhang, S., Chua, E. G., He, Y., Li, X., Liu, A., Chen, H., Wise, M. J., Marshall, B. J., Sun, D., Li, X. & Tay, C. Y., Dec 2021, In: Gut Pathogens. 13, 1, 38.Research output: Contribution to journal › Article › peer-review
Open Access10 Citations (Web of Science) -
Developing Bioprospecting Strategies for Bioplastics Through the Large-Scale Mining of Microbial Genomes
Vuong, P., Lim, D. J., Murphy, D. V., Wise, M. J., Whiteley, A. S. & Kaur, P., 12 Jul 2021, In: Frontiers in Microbiology. 12, 697309.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
Helicobacteriology update
Tay, A., Wise, M. J. & Marshall, B. J., Jun 2021, In: Microbiology Australia. 42, 2, p. 92-95 4 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
High Definition LiDAR mapping of Perth CBD
Ibrahim, M., Akhtar, N., Jalwana, M. A. A. K., Wise, M. & Mian, A., 2021, DICTA 2021 - 2021 International Conference on Digital Image Computing: Techniques and Applications. Zhou, J., Salvado, O., Sohel, F., Borges, P. V. K. & Wang, S. (eds.). IEEE, Institute of Electrical and Electronics Engineers, (DICTA 2021 - 2021 International Conference on Digital Image Computing: Techniques and Applications).Research output: Chapter in Book/Conference paper › Conference paper › peer-review
9 Citations (Scopus) -
Modelling evolutionary pathways for commensalism and hypervirulence in neisseria meningitidis
Mullally, C. A., Mikucki, A., Wise, M. J. & Kahler, C. M., 2021, In: Microbial Genomics. 7, 10, 000662.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
Temporal Microbial Community Dynamics Within a Unique Acid Saline Lake
Ghori, H., Wise, M. J. & Whiteley, A., 24 Jun 2021, In: Frontiers in Microbiology. 12, 649594.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Web of Science) -
2020
A novel taxon selection method, aimed at minimizing recombination, clarifies the discovery of a new sub-population of Helicobacter pylori from Australia
Lamichhane, B., Wise, M. J., Chua, E. G., Marshall, B. J. & Tay, C. Y., 1 Feb 2020, In: Evolutionary Applications. 13, 2, p. 278-289 12 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Citations (Scopus) -
Meningococcal Disease-Associated Prophage-Like Elements Are Present in Neisseria gonorrhoeae and Some Commensal Neisseria Species
Al Suwayyid, B. A., Rankine-Wilson, L., Speers, D. J., Wise, M. J., Coombs, G. W. & Kahler, C. M., 8 Feb 2020, In: Genome Biology and Evolution. 12, 2, p. 3938-3950 13 p.Research output: Contribution to journal › Article › peer-review
Open Access12 Citations (Scopus) -
Mutations of Helicobacter pylori RdxA are mainly related to the phylogenetic origin of the strain and not to metronidazole resistance
Zhang, S., Wang, X., Wise, M. J., He, Y., Chen, H., Liu, A., Huang, H., Young, S., Tay, C. Y., Marshall, B. J., Li, X. & Chua, E. G., 1 Nov 2020, In: The Journal of antimicrobial chemotherapy. 75, 11, p. 3152-3155 4 p.Research output: Contribution to journal › Article › peer-review
14 Citations (Scopus) -
Recent progress in the structure of glycogen serving as a durable energy reserve in bacteria
Wang, L., Wang, M., Wise, M. J., Liu, Q., Yang, T., Zhu, Z., Li, C., Tan, X., Tang, D. & Wang, W., 1 Jan 2020, In: World Journal of Microbiology and Biotechnology. 36, 1, 14.Research output: Contribution to journal › Review article › peer-review
21 Citations (Scopus) -
2019
A Longitudinal, Population-Level, Big-Data Study of Helicobacter pylori-Related Disease across Western Australia
Wise, M. J., Lamichhane, B. & Webberley, K. M., Nov 2019, In: Journal of Clinical Medicine. 8, 11, 10 p., 1821.Research output: Contribution to journal › Article › peer-review
Open Access9 Citations (Scopus) -
Analysis of core protein clusters identifies candidate variable sites conferring metronidazole resistance in Helicobacter pylori
Chua, E. G., Debowski, A., Webberley, K., Peters, F., Lamichhane, B., Loke, M. F., Vadivelu, J., Tay, C. Y., Marshall, B. & Wise, M. J., 1 Feb 2019, In: Gastroenterology Report. 7, 1, p. 42-49 8 p., goy048.Research output: Contribution to journal › Article › peer-review
Open Access18 Citations (Scopus) -
An updated view on bacterial glycogen structure
Wang, L. & Wise, M. J., 8 Nov 2019, In: Microbiology Australia. 40, 4, p. 195-199 5 p.Research output: Contribution to journal › Review article › peer-review
Open Access8 Citations (Scopus) -
Bioinformatics Analysis of Metabolism Pathways of Archaeal Energy Reserves
Wang, L., Liu, Q., Wu, X., Huang, Y., Wise, M. J., Liu, Z., Wang, W., Hu, J. & Wang, C., 1 Dec 2019, In: Scientific Reports. 9, 1, 1034.Research output: Contribution to journal › Article › peer-review
Open Access33 Citations (Scopus) -
Determining parameters for non-linear models of multi-loop free energy change
Ward-Graham, M., Sun, H., Datta, A., Wise, M. J. & Mathews, D., 1 Nov 2019, In: Bioinformatics. 35, 21, p. 4298-4306 9 p.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
Gastric Helicobacter pylori infection perturbs human oral microbiota
Chua, E. G., Chong, J. Y., Lamichhane, B., Webberley, K. M., Marshall, B. J., Wise, M. J. & Tay, C. Y., 28 Jan 2019, In: PEERJ. 2019, 1, 14 p., e6336.Research output: Contribution to journal › Article › peer-review
Open Access11 Citations (Scopus) -
Molecular Structure of Glycogen in Escherichia coli
Wang, L., Liu, Q., Tan, X., Wang, Z., Wang, M., Wise, M. J., Li, C., Ma, C., Li, E., Deng, B., Du, Y., Tang, D. & Gilbert, R. G., 8 Jul 2019, In: Biomacromolecules. 20, 7, p. 2821-2829 9 p.Research output: Contribution to journal › Article › peer-review
Open Access38 Citations (Scopus) -
RNA Stable Isotope Probing (RNA-SIP)
Ghori, N. U. H., Moreira-Grez, B., Vuong, P., Waite, I., Morald, T., Wise, M. & Whiteley, A. S., 1 Jan 2019, Stable Isotope Probing : Methods and Protocols. Dumont, M. G. & Hernández García, M. (eds.). USA: Humana Press Inc., p. 31-44 14 p. (Methods in Molecular Biology; vol. 2046).Research output: Chapter in Book/Conference paper › Chapter › peer-review
3 Citations (Scopus) -
Seasonal Dynamics of Eukaryotic and Prokaryotic Diversity in an Acid Saline Lake
Ghori, N-U-H., Wise, M. J. & Whiteley, A., 2019.Research output: Contribution to conference › Poster
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Structural, biomechanical and hemodynamic assessment of the bladder wall in healthy subjects
Volikova, A. I., Marshall, B. J., Yin, J. M. A., Goodwin, R., Ee-Pan Chow, P. & Wise, M. J., 1 Jan 2019, In: Research and Reports in Urology. 11, p. 233-245 13 p.Research output: Contribution to journal › Article › peer-review
Open Access17 Citations (Scopus) -
Structure and Evolution of Glycogen Branching Enzyme N-Termini From Bacteria
Wang, L., Liu, Q., Hu, J., Asenso, J., Wise, M. J., Wu, X., Ma, C., Chen, X., Yang, J. & Tang, D., 14 Jan 2019, In: Frontiers in Microbiology. 10, JAN, 12 p., 3354.Research output: Contribution to journal › Article › peer-review
Open Access28 Citations (Web of Science) -
Systematic analysis of metabolic pathway distributions of bacterial energy reserves
Wang, L., Yang, J., Huang, Y., Liu, Q., Xu, Y., Piao, X. & Wise, M. J., 1 Aug 2019, In: G3: Genes, Genomes, Genetics. 9, 8, p. 2489-2496 8 p.Research output: Contribution to journal › Article › peer-review
Open Access10 Citations (Web of Science) -
The complete genome and methylome of Helicobacter pylori hpNEAfrica strain HP14039
Lamichhane, B., Chua, E-G., Wise, M. J., Laming, C., Marshall, B. J. & Tay, C-Y., 20 Feb 2019, In: Gut Pathogens. 11, 1, p. 7 8 p., 284.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
Uncovering the microbial interactome: The social life of extremophiles
Ghori, N-U-H., Wise, M. J. & Whiteley, A., 2019.Research output: Contribution to conference › Conference presentation/ephemera
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2018
A Faster Algorithm for Maximum Induced Matchings on Circle Graphs
Ward-Graham, M. H., Gozzard, A., Wise, M. J. & Datta, A., Aug 2018, In: Journal of Graph Algorithms and Applications. 22, 2, p. 389-396 8 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Distribution patterns of polyphosphate metabolism pathway and its relationships with bacterial durability and virulence
Wang, L., Yan, J., Wise, M. J., Liu, Q., Asenso, J., Huang, Y., Dai, S., Liu, Z., Du, Y. & Tang, D., 24 Apr 2018, In: Frontiers in Microbiology. 9, APR, 782.Research output: Contribution to journal › Article › peer-review
Open Access36 Citations (Scopus) -
Genomic epidemiology and population structure of Neisseria gonorrhoeae from remote highly endemic Western Australian populations
Al Suwayyid, B. A., Coombs, G. W., Speers, D. J., Pearson, J., Wise, M. J. & Kahler, C. M., 27 Feb 2018, In: BMC Genomics. 19, 1, 165.Research output: Contribution to journal › Article › peer-review
Open Access18 Citations (Scopus) -
Optimized M9 minimal salts medium for enhanced growth rate and glycogen accumulation of Escherichia coli DH5α
Wang, L., Liu, Q., Du, Y., Tang, D. & Wise, M. J., 1 Sept 2018, In: Microbiology and Biotechnology Letters. 46, 3, p. 194-200 7 p.Research output: Contribution to journal › Article › peer-review
7 Citations (Scopus) -
2017
Advanced multi-loop algorithms for RNA secondary structure prediction reveal that the simplest model is best
Ward, M., Datta, A., Wise, M. & Matthews, D., 21 Aug 2017, In: Nucleic Acids Research. 45, 14, p. 8541-8550 10 p.Research output: Contribution to journal › Article › peer-review
Open Access17 Citations (Scopus) -
Human milk composition and function in the infant
Geddes, D., Kakulas, F., Wise, M. & Hartmann, P., 1 Jan 2017, Fetal and Neonatal Physiology . Polin, R. A., Abman, S. H., Rowitch, D. H., Benitz, W. E. & Fox, W. W. (eds.). 5th ed. Philadelphia: Elsevier, Vol. 1. p. 273-280.e3 8 p.Research output: Chapter in Book/Conference paper › Chapter › peer-review
7 Citations (Scopus) -
Quantum changes in Helicobacter pylori gene expression accompany host-adaptation
Chua, E-G., Wise, M. J., Khosravi, Y., Seow, S-W., Amoyo, A. A., Pettersson, S., Peters, F., Tay, C-Y., Perkins, T. T., Loke, M-F., Marshall, B. J. & Vadivelu, J., Feb 2017, In: DNA Research. 24, 1, p. 37-49 13 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Citations (Scopus) -
The Sit-and-Wait Hypothesis in Bacterial Pathogens: A Theoretical Study of Durability and Virulence
Wang, L., Liu, Z., Dai, S., Yan, J. & Wise, M. J., 3 Nov 2017, In: Frontiers in Microbiology. 8, NOV, p. 1-14 14 p., 2167.Research output: Contribution to journal › Article › peer-review
Open Access16 Citations (Scopus) -
2016
dCITE: Measuring necessary cladistic information can help you reduce polytomy artefacts in trees
Wise, M. J., 1 Nov 2016, In: PLoS One. 11, 11, e0166991.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
2015
Consistent gene expression profiles in MexTAg transgenic mouse and wild type mouse asbestos-induced mesothelioma
Robinson, C., Dick, I., Wise, M., Holloway, A., Diyagama, D., Robinson, B., Creaney, J. & Lake, R., 18 Dec 2015, In: BMC Cancer. 15, 14 p., 983.Research output: Contribution to journal › Article › peer-review
Open AccessFile12 Citations (Scopus)242 Downloads (Pure) -
Influence of in situ progressive N-terminal is still controversial truncation of glycogen branching enzyme in Escherichia coli DH5α on glycogen structure, accumulation, and bacterial viability
Wang, L., Regina, A., Butardo, V. M., Kosar-Hashemi, B., Larroque, O., Kahler, C. & Wise, M., 2015, In: BMC Microbiology. 15, 96, p. 1-14Research output: Contribution to journal › Article › peer-review
Open Access16 Citations (Scopus) -
Novel Moraxella catarrhalis prophages display hyperconserved non-structural genes despite their genomic diversity
Ariff, A., Wise, M., Kahler, C., Tay, A. C. Y., Peters, F., Perkins, T. & Chang, B., 24 Oct 2015, In: BMC Genomics. 16, 1, p. 1-19 19 p., 860.Research output: Contribution to journal › Article › peer-review
Open Access11 Citations (Scopus) -
2014
Comparative analysis of the full genome of the Helicobacter pylori isolate, Sahul64, identifies genes of high divergence
Lu, W., Wise, M., Tay, A. C. Y., Windsor, H., Marshall, B., Peacock, C. & Perkins, T., 2014, In: Journal of Bacteriology. 196, 5, p. 1073-1083Research output: Contribution to journal › Article › peer-review
Open Access27 Citations (Scopus) -
2013
Anhydrobiosis: The curious case of the bdelloid rotifer
Boschetti, C., Crisp, A., Micklem, G., Wise, M. & Tunnacliffe, A., 2013, In: Cryobiology and Cryotechnology. 59, 1, p. 29-34 6 p.Research output: Contribution to journal › Article › peer-review
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A Preliminary Study on the Effects of Barnstars on Wikipedia Editing
Lim, K. H., Datta, A. & Wise, M., 2013, The 9th International Symposium on Wikis and Open Collaboration. New York, USA: Association for Computing Machinery (ACM), Vol. N/A. p. 2ppResearch output: Chapter in Book/Conference paper › Conference paper
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Mean Protein Evolutionary Distance: A Method for Comparative Protein Evolution and Its Application
Wise, M., 2013, In: PLoS One. 8, 4, p. 10ppResearch output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
2012
Coexpression of nuclear receptors and histone methylation modifying genes in the testis: Implications for endocrine disruptor modes of action
Anderson, A. M., Carter, K., Anderson, D. & Wise, M., 2012, In: PLoS One. 7, 4, p. 11ppResearch output: Contribution to journal › Article › peer-review
Open Access22 Citations (Scopus)