• The University of Western Australia (M084), 35 Stirling Highway,

    6009 Perth

    Australia

  • 6756 Citations
  • 37 h-Index
19982019
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Research Output 1998 2019

2019

Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies

Tulpová, Z., Luo, M. C., Toegelová, H., Visendi, P., Hayashi, S., Vojta, P., Paux, E., Kilian, A., Abrouk, M., Bartoš, J., Hajdúch, M., Batley, J., Edwards, D., Doležel, J. & Šimková, H., 25 Jan 2019, In : New Biotechnology. 48, p. 12-19

Research output: Contribution to journalArticle

Cloning
Bread
Chromosomes
Triticum
Organism Cloning
2018
1 Citations

Agricultural selection and presence-absence variation in spring-type canola germplasm

Mason, A. S., Chauhan, P., Banga, S., Banga, S. S., Salisbury, P., Barbetti, M. J. & Batley, J., 1 Jan 2018, Crop & Pasture Science: 2016 International Brassica Conference. Van de Wouw, A. & Batley, J. (eds.). 1 ed. Australia: CSIRO Publishing, Vol. 69. p. 55-64 10 p. (Crop and Pasture Science).

Research output: Chapter in Book/Conference paperConference paper

Open Access
File
canola
Brassica napus
germplasm
genome
chromosomes

Bias in resistance gene prediction due to repeat masking

Bayer, P. E., Edwards, D. & Batley, J., 1 Oct 2018, In : Nature Plants. 4, 10, p. 762-765 4 p.

Research output: Contribution to journalArticle

prediction
genes
genome
plant breeding
Brassicaceae

Brassica 2016 Phenomics to genomics and everything in between

Van De Wouw, A. & Batley, J., 1 Jan 2018, In : Crop and Pasture Science. 69, 1, p. i

Research output: Contribution to journalEditorial

1 Citations

Genetic and molecular regulation of seed storage proteins (SSPs) to improve protein nutritional value of oilseed rape (Brassica napus L.) seeds

Gacek, K., Bartkowiak-Broda, I. & Batley, J., 2 Jul 2018, In : Frontiers in Plant Science. 9, 890.

Research output: Contribution to journalReview article

Open Access
seed storage proteins
Brassica napus
nutritive value
seeds
oilseed protein
4 Citations

Genome-wide identification and comparative analysis of NBS-LRR resistance genes in Brassica napus

Alamery, S., Tirnaz, S., Bayer, P., Tollenaere, R., Chaloub, B., Edwards, D. & Batley, J., 1 Jan 2018, In : Crop and Pasture Science. 69, S1, p. 79-93 15 p.

Research output: Contribution to journalConference article

Open Access
File
Brassica napus
leucine
binding sites
nucleotides
genome

Genomic comparison of two independent seagrass lineages reveals habitat-driven convergent evolution

Lee, H., Golicz, A. A., Bayer, P. E., Severn-Ellis, A. A., Chan, C. K. K., Batley, J., Kendrick, G. A. & Edwards, D., 27 Jun 2018, In : Journal of Experimental Botany. 69, 15, p. 3689-3702 14 p.

Research output: Contribution to journalArticle

Open Access
convergent evolution
Ecosystem
Zosteraceae
Oceans and Seas
genomics
5 Citations

Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus

Hurgobin, B., Golicz, A. A., Bayer, P. E., Chan, C-K. K., Tirnaz, S., Dolatabadian, A., Schiessl, S. V., Samans, B., Montenegro, J. D., Parkin, I. A. P., Pires, J. C., Chalhoub, B., King, G. J., Snowdon, R., Batley, J. & Edwards, D., 10 Jan 2018, In : Plant Biotechnology Journal. p. 1-10

Research output: Contribution to journalArticle

Open Access
Brassica napus
major genes
Genes
genes
Glucosinolates
2 Citations
Open Access
marker-assisted selection
drought tolerance
single nucleotide polymorphism
chromosome mapping
genome
6 Citations

Investigation of the diversity of effector genes in the banana pathogen, Fusarium oxysporum f. sp. cubense, reveals evidence of horizontal gene transfer

Czislowski, E., Fraser-Smith, S., Zander, M., O'Neill, W. T., Meldrum, R. A., Tran-Nguyen, L. T. T., Batley, J. & Aitken, E. A. B., 1 May 2018, In : Molecular Plant Pathology. 19, 5, p. 1155-1171 17 p.

Research output: Contribution to journalArticle

Fusarium oxysporum f. sp. cubense
Xylem
Horizontal Gene Transfer
Musa
gene transfer
1 Citations

Molecular breeding for resistance to black rot [Xanthomonas campestris pv. campestris (Pammel) Dowson] in Brassicas: recent advances

Singh, S., Dey, S. S., Bhatia, R., Batley, J. & Kumar, R., 1 Oct 2018, In : Euphytica. 214, 10, 196.

Research output: Contribution to journalReview article

DNA Shuffling
Xanthomonas campestris pv. campestris
Xanthomonas campestris
Brassica
Breeding
1 Citations

Revolution in genotyping platforms for crop improvement

Scheben, A., Batley, J. & Edwards, D., 2018, Advances in Biochemical Engineering/Biotechnology. Varshney, R. K., Pandey, M. K. & Chitikineni, A. (eds.). Switzerland: Springer, p. 37-52 16 p. (Advances in Biochemical Engineering/Biotechnology; vol. 164).

Research output: Chapter in Book/Conference paperChapter

Crops
Costs and Cost Analysis
Single Nucleotide Polymorphism
Genome
Nucleotides

RNAi-based management for Fusarium wilt of banana

Fei, S., Constantin, M., Peters, J., Batley, J., Aitken, E. & Mitter, N., 30 Jun 2018, International Symposia on Tropical and Temperate Horticulture - ISTTH2016. Drew, R. (ed.). Australia: International Society for Horticultural Science, p. 717-720 4 p. (Acta Horticulturae; vol. 1205).

Research output: Chapter in Book/Conference paperConference paper

Fusarium wilt
bananas
double-stranded RNA
gene silencing
Plantae
26 Citations

Shifting the limits in wheat research and breeding using a fully annotated reference genome

International Wheat Genome Sequencing Consortium (IWGSC), 17 Aug 2018, In : Science. 361, 6403, eaar7191.

Research output: Contribution to journalArticle

Triticum
Breeding
Genome
Research
Atlases
35 Citations

Speed breeding is a powerful tool to accelerate crop research and breeding

Watson, A., Ghosh, S., Williams, M. J., Cuddy, W. S., Simmonds, J., Rey, M. D., Asyraf Md Hatta, M., Hinchliffe, A., Steed, A., Reynolds, D., Adamski, N. M., Breakspear, A., Korolev, A., Rayner, T., Dixon, L. E., Riaz, A., Martin, W., Ryan, M., Edwards, D., Batley, J. & 15 othersRaman, H., Carter, J., Rogers, C., Domoney, C., Moore, G., Harwood, W., Nicholson, P., Dieters, M. J., Delacy, I. H., Zhou, J., Uauy, C., Boden, S. A., Park, R. F., Wulff, B. B. H. & Hickey, L. T., 1 Jan 2018, In : Nature Plants. 4, 1, p. 23-29 7 p.

Research output: Contribution to journalArticle

breeding
crops
lighting
greenhouses
cost effectiveness

Variation in abundance of predicted resistance genes in the Brassica oleracea pangenome

Bayer, P. E., Golicz, A. A., Tirnaz, S., Chan, C. K. K., Edwards, D. & Batley, J., 31 May 2018, In : Plant Biotechnology Journal.

Research output: Contribution to journalArticle

Open Access
Brassica
Brassica oleracea
Genes
genes
Disease Resistance
2017
6 Citations

An advanced reference genome of Trifolium subterraneum L. reveals genes related to agronomic performance

Kaur, P., Bayer, P. E., Milec, Z., Vrána, J., Yuan, Y., Appels, R., Edwards, D., Batley, J., Nichols, P., Erskine, W. & Doležel, J., 12 Jul 2017, In : Plant Biotechnology Journal. 15, 8, p. 1034-1046 13 p.

Research output: Contribution to journalArticle

Open Access
Trifolium
Trifolium subterraneum
agronomic traits
Medicago
Genome
9 Citations

Assembly and comparison of two closely related Brassica napus genomes

Bayer, P. E., Hurgobin, B., Golicz, A. A., Chan, C-K. K., Yuan, Y., Lee, H., Renton, M., Meng, J., Li, R., Long, Y., Zou, J., Bancroft, I., Chalhoub, B., King, G. J., Batley, J. & Edwards, D., 14 Jun 2017, In : Plant Biotechnology Journal. 15, 12, p. 1-9 9 p.

Research output: Contribution to journalArticle

Open Access
Brassica napus
Genome
genome
Genes
genes
15 Citations

A user guide to the Brassica60K Illumina Infinium™ SNP genotyping array

Mason, A. S., Higgins, E. E., Snowdon, R. J., Batley, J., Stein, A., Werner, C. & Parkin, I. A. P., Apr 2017, In : Theoretical and Applied Genetics. 130, 4, p. 621–633 13 p.

Research output: Contribution to journalReview article

genotyping
Single Nucleotide Polymorphism
Brassica
Brassica napus
loci
3 Citations

Copy number variation and disease resistance in plants

Dolatabadian, A., Patel, D. A., Edwards, D. & Batley, J., Dec 2017, In : Theoretical and Applied Genetics. 130, 12, p. 2479-2490 12 p.

Research output: Contribution to journalArticle

Open Access
File
Disease Resistance
disease resistance
Plant Dispersal
Plant Genome
Plant Diseases
5 Citations

Current status and challenges in identifying disease resistance genes in Brassica napus

Neik, T. X., Barbetti, M. & Batley, J., 6 Nov 2017, In : Frontiers in Plant Science. 8, p. 1-37 1788.

Research output: Contribution to journalArticle

Open Access
File
Brassica napus
disease resistance
pathogens
genes
cole crops
2 Citations

Cytogenetic and molecular characterization of B-genome introgression lines of Brassica napus L.

Dhaliwal, I., Mason, A. S., Banga, S., Bharti, S., Kaur, B., Gurung, A. M., Salisbury, P. A., Batley, J. & Banga, S. S., Jan 2017, In : G3: Genes, Genomes, Genetics. 7, 1, p. 77-86 10 p.

Research output: Contribution to journalArticle

Open Access
Brassica napus
Cytogenetics
Chromosomes
Genome
Single Nucleotide Polymorphism
8 Citations

Genome analysis identified novel candidate genes for ascochyta blight resistance in chickpea using whole genome re-sequencing data

Li, Y., Ruperao, P., Batley, J., Edwards, D., Davidson, J., Hobson, K. & Sutton, T., 17 Mar 2017, In : Frontiers in Plant Science. 8, 359.

Research output: Contribution to journalArticle

Open Access
Ascochyta
blight
single nucleotide polymorphism
genome
phosphotransferases (kinases)
7 Citations

Genome-wide association study of genetic control of seed fatty acid biosynthesis in Brassica napus

Gacek, K., Bayer, P. E., Bartkowiak-Broda, I., Szala, L., Bocianowski, J., Edwards, D. & Batley, J., 20 Jan 2017, In : Frontiers in Plant Science. 7, 2062.

Research output: Contribution to journalArticle

Open Access
Brassica napus
biosynthesis
fatty acids
seeds
stearoyl-CoA desaturase
4 Citations

Genoproteomics-assisted improvement of Andrographis paniculata: toward a promising molecular and conventional breeding platform for autogamous plants affecting the pharmaceutical industry

Valdiani, A., Talei, D., Lattoo, S. K., Ortiz, R., Rasmussen, S. K., Batley, J., Rafii, M. Y., Maziah, M., Sabu, K. K., Abiri, R., Sakuanrungsirikul, S. & Tan, S. G., 3 Jan 2017, In : Critical Reviews in Biotechnology. 37, 6, p. 803-816 14 p.

Research output: Contribution to journalArticle

Andrographis
DNA Shuffling
Drug Industry
Breeding
Clustered Regularly Interspaced Short Palindromic Repeats
21 Citations

Genotyping-by-sequencing approaches to characterize crop genomes: choosing the right tool for the right application

Scheben, A., Batley, J. & Edwards, D., 1 Feb 2017, In : Plant Biotechnology Journal. 15, 2, p. 149-161 13 p.

Research output: Contribution to journalReview article

Open Access
File
genotyping
Genome
Costs and Cost Analysis
genome
crops
12 Citations

Improvements in Genomic Technologies: Application to Crop Genomics

Yuan, Y., Bayer, P. E., Batley, J. & Edwards, D., Jun 2017, In : Trends in Biotechnology. 35, 6, p. 547-558

Research output: Contribution to journalReview article

Genomics
Crops
Genes
Genome
Technology
5 Citations

Neodiversification of homeologous CLAVATA1-like receptor kinase genes in soybean leads to distinct developmental outcomes

Mirzaei, S., Batley, J., El-Mellouki, T., Liu, S., Meksem, K., Ferguson, B. J. & Gresshoff, P. M., 1 Dec 2017, In : Scientific Reports. 7, 1, 8878.

Research output: Contribution to journalArticle

Open Access
Soybeans
Phosphotransferases
Phenotype
Symbiosis
Meristem
7 Citations

RNA-Seq and metabolic flux analysis of Tetraselmis sp. M8 during nitrogen starvation reveals a two-stage lipid accumulation mechanism

Lim, D. K. Y., Schuhmann, H., Thomas-Hall, S. R., Chan, K. C. K., Wass, T. J., Aguilera, F., Adarme-Vega, T. C., Dal'Molin, C. G. O., Thorpe, G. J., Batley, J., Edwards, D. & Schenk, P. M., 1 Nov 2017, In : Bioresource Technology. 244, Part 2, p. 1281-1293 13 p.

Research output: Contribution to journalArticle

RNA
starvation
Lipids
Nitrogen
lipid
1 Citations

Segregation for fertility and meiotic stability in novel Brassica allohexaploids

Mwathi, M. W., Gupta, M., Atri, C., Banga, S. S., Batley, J. & Mason, A. S., 1 Apr 2017, In : Theoretical and Applied Genetics. 130, 4, p. 767-778

Research output: Contribution to journalArticle

Brassica
Fertility
Population
Pollen
varespladib methyl
10 Citations

The loss of vernalization requirement in narrow-leafed lupin is associated with a deletion in the promoter and de-repressed expression of a Flowering Locus T (FT) homologue

Nelson, M. N., Ksiazkiewicz, M., Rychel, S., Besharat, N., Taylor, C. M., Wyrwa, K., Jost, R., Erskine, W., Cowling, W. A., Berger, J. D., Batley, J., Weller, J. L., Naganowska, B. & Wolko, B., 1 Jan 2017, In : New Phytologist. 213, 1, p. 220-232 13 p.

Research output: Contribution to journalArticle

Lupinus
vernalization
promoter regions
flowering
Mutation
24 Citations

The pangenome of hexaploid bread wheat

Montenegro, J. D., Golicz, A. A., Bayer, P. E., Hurgobin, B., Lee, H., Chan, C. K. K., Visendi, P., Lai, K., Doležel, J., Batley, J. & Edwards, D., Jun 2017, In : The Plant Journal. 90, 5, p. 1007-1013

Research output: Contribution to journalArticle

Bread
hexaploidy
Triticum
wheat
Genes
28 Citations

Towards CRISPR/Cas crops - bringing together genomics and genome editing

Scheben, A., Wolter, F., Batley, J., Puchta, H. & Edwards, D., Nov 2017, In : New Phytologist. 216, 3, p. 682-698 17 p.

Research output: Contribution to journalReview article

Open Access
File
2016
38 Citations

A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome

Clarke, W. E., Higgins, E. E., Plieske, J., Wieseke, R., Sidebottom, C., Khedikar, Y., Batley, J., Edwards, D., Meng, J., Li, R., Lawley, C. T., Pauquet, J., Laga, B., Cheung, W., Iniguez-Luy, F., Dyrszka, E., Rae, S., Stich, B., Snowdon, R. J., Sharpe, A. G. & 2 othersGanal, M. W. & Parkin, I. A. P., 2016, In : Theoretical and Applied Genetics. 129, 10, p. 1887-1899

Research output: Contribution to journalArticle

Open Access
Brassica napus
Diploidy
genotyping
single nucleotide polymorphism
Single Nucleotide Polymorphism
4 Citations

An efficient approach to BAC based assembly of complex genomes

Visendi, P., Berkman, P. J., Hayashi, S., Golicz, A. A., Bayer, P., Ruperao, P., Hurgobin, B., Montenegro, J., Chan, K., Staňková, H., Batley, J., Šimková, H., Doležel, J. & Edwards, D., 20 Jan 2016, In : Plant Methods. 12, 1, p. 1

Research output: Contribution to journalArticle

Open Access
Bacterial Artificial Chromosomes
bacterial artificial chromosomes
Genome
genome
sequence analysis
5 Citations

Can genomics assist the phenological adaptation of canola to new and changing environments?

Nelson, M. N., Lilley, J. M., Helliwell, C., Taylor, C. M., Siddique, K. H. M., Chen, S., Raman, H., Batley, J. & Cowling, W. A., 29 Mar 2016, In : Crop and Pasture Science. 67, 3-4, p. 284-297 14 p.

Research output: Contribution to journalReview article

canola
flowering
genomics
Brassica napus
phenology
13 Citations

Centromere Locations in Brassica A and C Genomes Revealed Through Half-Tetrad Analysis

Mason, A. S., Rousseau-Gueutin, M., Morice, J., Bayer, P., Besharat, N., Cousin, A., Pradhan, A., Parkin, I. A., Chevre, A. M., Batley, J. & Nelson, M., Feb 2016, In : Genetics. 202, 2, p. 513-523

Research output: Contribution to journalArticle

Open Access
Centromere
Brassica
Genome
Brassica napus
Chromatids

Genome-wide association analyses provide genomic insights into natural variation in heat tolerance of Brassica rapa

Chen, S., Hayward, A., Witt Hmon, K. P., Dey, S. S., Inturrisi, F. C., Dolatabadian, A., Neik, T. X., Yang, H., Nelson, M., Turner, N., Siddique, K., Cowling, W. & Batley, J., 2016.

Research output: Contribution to conferenceAbstract

10 Citations

Genome-wide association study identifies new loci for resistance to leptosphaeria maculans in canola

Raman, H., Raman, R., Coombes, N., Song, J., Diffey, S., Kilian, A., Lindbeck, K., Barbulescu, D. M., Batley, J., Edwards, D., Salisbury, P. A. & Marcroft, S., 24 Oct 2016, In : Frontiers in Plant Science. 7, OCTOBER, 1513.

Research output: Contribution to journalArticle

Open Access
Plenodomus lingam
canola
loci
Brassica napus
mature plants
7 Citations

Germin-like protein 2 gene promoter from rice is responsive to fungal pathogens in transgenic potato plants

Munir, F., Hayashi, S., Batley, J., Naqvi, S. M. S. & Mahmood, T., 2016, In : Functional & Integrative Genomics. 16, 1, p. 19-27

Research output: Contribution to journalArticle

38 Citations

Global agricultural intensification during climate change: a role for genomics

Abberton, M., Batley, J., Bentley, A., Bryant, J., Cai, H., Cockram, J., Costa De Oliveira, A., Cseke, L. J., Dempewolf, H., De Pace, C., Edwards, D., Gepts, P., Greenland, A., Hall, A. E., Henry, R., Hori, K., Howe, G. T., Hughes, S., Humphreys, M., Lightfoot, D. & 10 othersMarshall, A., Mayes, S., Nguyen, H. T., Ogbonnaya, F. C., Ortiz, R., Paterson, A. H., Tuberosa, R., Valliyodan, B., Varshney, R. & Yano, M., Apr 2016, In : Plant Biotechnology Journal. 14, 4, p. 1095–1098

Research output: Contribution to journalReview article

Open Access
Climate Change
Genomics
Agriculture
Breeding
specialty crops
6 Citations

High-throughput FACS-based mutant screen identifies a gain-of-function allele of the Fusarium graminearum adenylyl cyclase causing deoxynivalenol over-production

Blum, A., Benfield, A. H., Stiller, J., Kazan, K., Batley, J. & Gardiner, D. M., 2016, In : Fungal Genetics and Biology. 90, p. 1-11

Research output: Contribution to journalArticle

Fusarium
Adenylyl Cyclases
Flow Cytometry
Alleles
Triticum
4 Citations

Molecular-cytogenetic characterization of C-genome chromosome substitution lines in Brassica juncea (L.) Czern and Coss.

Gupta, M., Mason, A. S., Batley, J., Bharti, S., Banga, S. & Banga, S. S., Jun 2016, In : Theoretical and Applied Genetics. 129, 6, p. 1153-1166

Research output: Contribution to journalArticle

Chromosomes, Human, 6-12 and X
substitution lines
Mustard Plant
Brassica juncea
cytogenetics

Plant Genomics and Climate Change

Edwards, D. (ed.) & Batley, J. (ed.), 2016, Springer-Verlag London Ltd.

Research output: Book/ReportEdited book/Anthology

Population diversity and genomics of the fungal pathogen of canola Leptosphaeria maculans

Patel, D. A., 2016

Research output: ThesisNon-UWA Thesis

SNP analysis of Macadamia integrifolia chloroplast genomes to determine the genetic structure of wild populations

Ahmad Termizi, A. A., Hardner, C. M., Batley, J., Nock, C. J., Hayashi, S., Montenegro, J. D. & Edwards, D., 2016, Acta Horticulturae. Wirthensohn, M. (ed.). Acta Horticulturae, Vol. 1109. p. 175-180 6 p.

Research output: Chapter in Book/Conference paperConference paper

Macadamia integrifolia
Mirabilis expansa
Macadamia
single nucleotide polymorphism
cultivars
14 Citations
Open Access
File
bioinformatics
climate change
genomics
crops
breeding
3 Citations

The Fdb3 transcription factor of the Fusarium Detoxification of Benzoxazolinone gene cluster is required for MBOA but not BOA degradation in Fusarium pseudograminearum

Kettle, A. J., Carere, J., Batley, J., Manners, J. M., Kazan, K. & Gardiner, D. M., 2016, In : Fungal Genetics and Biology. 88, p. 44-53

Research output: Contribution to journalArticle

Fusarium
Multigene Family
Transcription Factors
Aminophenols
Genes
11 Citations

The genome of a southern hemisphere seagrass species (Zostera muelleri)

Lee, H., Golicz, A. A., Bayer, P. E., Jiao, Y., Tang, H., Paterson, A. H., Sablok, G., Krishnaraj, R. R., Chan, C-K. K., Batley, J., Kendrick, G. A., Larkum, A. W. D., Ralph, P. J. & Edwards, D., Sep 2016, In : Plant Physiology. 172, 1, p. 272-283

Research output: Contribution to journalArticle

Open Access
Zosteraceae
Zostera
Oceans and Seas
Carbon Sequestration
Genome