• The University of Western Australia (M316), 35 Stirling Highway, Room 4.73, Bayliss Building, Perth campus

    6009 Perth

    Australia

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Research Output 2001 2019

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Article
2019
2 Citations (Scopus)

Evolutionary Model of Plastidial RNA Editing in Angiosperms Presumed from Genome-Wide Analysis of Amborella trichopoda

Ishibashi, K., Small, I. & Shikanai, T., 1 Oct 2019, In : Plant & Cell Physiology. 60, 10, p. 2141-2151 11 p.

Research output: Contribution to journalArticle

Amborella trichopoda
RNA Editing
RNA editing
Angiosperms
Angiospermae
4 Citations (Scopus)
81 Downloads (Pure)

Genome-scale transfer of mitochondrial DNA from legume hosts to the holoparasite Lophophytum mirabile (Balanophoraceae)

Virginia Sanchez-Puerta, M., Edera, A., Gandini, C. L., Williams, A. V., Howell, K. A., Nevill, P. G. & Small, I., Mar 2019, In : Molecular Phylogenetics and Evolution. 132, p. 243-250 8 p.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)

Plastome-wide rearrangements and gene losses in carnivorous droseraceae

Nevill, P. G., Howell, K. A., Cross, A. T., Williams, A. V., Zhong, X., Tonti-Filippini, J., Boykin, L. M., Dixon, K. W. & Small, I., 1 Jan 2019, In : Genome Biology and Evolution. 11, 2, p. 472-485 14 p.

Research output: Contribution to journalArticle

Open Access
Droseraceae
Gene Rearrangement
Carnivory
Drosera
Plastid Genomes
1 Citation (Scopus)

Recent range expansion in Australian hummock grasses (Triodia) inferred using genotyping-by-sequencing

Anderson, B. M., Thiele, K. R., Grierson, P. F., Krauss, S. L., Nevill, P. G., Small, I. D., Zhong, X. & Barrett, M. D., Apr 2019, In : AOB Plants. 11, 2, 14 p., 017.

Research output: Contribution to journalArticle

Open Access
1 Downloads (Pure)
Amaranthaceae
plastid
Aerva
phylogeny
genome
Open Access
Hybrid Vigor
Metabolic Network
Biomass
Metabolic Networks and Pathways
Genome

The coordinated action of PPR4 and EMB2654 on each intron half mediates trans-splicing of rps12 transcripts in plant chloroplasts

Lee, K., Park, S. J., Colas des Francs-Small, C., Whitby, M., Small, I. & Kang, H., 23 Aug 2019, In : Plant Journal.

Research output: Contribution to journalArticle

Trans-Splicing
trans-splicing
Chloroplasts
Introns
introns
2 Citations (Scopus)

The E domain of CRR2 participates in sequence-specific recognition of RNA in plastids

Ruwe, H., Gutmann, B., Schmitz-Linneweber, C., Small, I. & Kindgren, P., Apr 2019, In : New Phytologist. 222, 1, p. 218-229 12 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Towards a plant model for enigmatic U-to-C RNA editing: the organelle genomes, transcriptomes, editomes and candidate RNA editing factors in the hornwort Anthoceros agrestis

Gerke, P., Szovenyi, P., Neubauer, A., Lenz, H., Gutmann, B., McDowell, R., Small, I., Schallenberg-Ruedinger, M. & Knoop, V., 14 Dec 2019, In : New Phytologist. 19 p.

Research output: Contribution to journalArticle

Open Access
2018
6 Citations (Scopus)

Complete chloroplast genome sequences of four meliaceae species and comparative analyses

Mader, M., Pakull, B., Blanc-Jolivet, C., Paulini-Drewes, M., Bouda, Z. H. N., Degen, B., Small, I. & Kersten, B., 1 Mar 2018, In : International Journal of Molecular Sciences. 19, 3, 19.

Research output: Contribution to journalArticle

Open Access
Meliaceae
Chloroplast Genome
chloroplasts
genome
genes
5 Citations (Scopus)

Editing of chloroplast rps14 by PPR editing factor EMB2261 is essential for Arabidopsis development

Sun, Y. K., Gutmann, B., Yap, A., Kindgren, P. & Small, I., 20 Jun 2018, In : Frontiers in Plant Science. 9, 841.

Research output: Contribution to journalArticle

Open Access
RNA editing
plastids
embryogenesis
chloroplasts
Arabidopsis
6 Citations (Scopus)

Establishment of photosynthesis through chloroplast development is controlled by two distinct regulatory phases

Dubreuil, C., Jin, X., Barajas-López, J. D. D., Hewitt, T. C., Tanz, S. K., Dobrenel, T., Schröder, W. P., Hanson, J., Pesquet, E., Grönlund, A., Small, I. & Strand, Å., 1 Feb 2018, In : Plant Physiology. 176, 2, p. 1199-1214 16 p.

Research output: Contribution to journalArticle

Open Access
Photosynthesis
Chloroplasts
chloroplasts
photosynthesis
Arabidopsis
51 Citations (Scopus)

Fern genomes elucidate land plant evolution and cyanobacterial symbioses

Li, F. W., Brouwer, P., Carretero-Paulet, L., Cheng, S., de Vries, J., Delaux, P. M., Eily, A., Koppers, N., Kuo, L. Y., Li, Z., Simenc, M., Small, I., Wafula, E., Angarita, S., Barker, M. S., Bräutigam, A., DePamphilis, C., Gould, S., Hosmani, P. S., Huang, Y. M. & 22 othersHuettel, B., Kato, Y., Liu, X., Maere, S., McDowell, R., Mueller, L. A., Nierop, K. G. J., Rensing, S. A., Robison, T., Rothfels, C. J., Sigel, E. M., Song, Y., Timilsena, P. R., van de Peer, Y., Wang, H., Wilhelmsson, P. K. I., Wolf, P. G., Xu, X., Der, J. P., Schluepmann, H., Wong, G. K. S. & Pryer, K. M., 2 Jul 2018, In : Nature Plants. 4, 7, p. 460-472 13 p.

Research output: Contribution to journalArticle

Open Access
Azolla
embryophytes
ferns and fern allies
symbiosis
genome
4 Citations (Scopus)
179 Downloads (Pure)

High intraspecific diversity of Restorer-of-fertility-like genes in barley

Melonek, J., Zhou, R., Bayer, P. E., Edwards, D., Stein, N. & Small, I., 1 Oct 2018, In : The Plant Journal.

Research output: Contribution to journalArticle

Open Access
File
Hordeum
Fertility
barley
Genes
genes
388 Citations (Scopus)

Shifting the limits in wheat research and breeding using a fully annotated reference genome

International Wheat Genome Sequencing Consortium (IWGSC), 17 Aug 2018, In : Science. 361, 6403, eaar7191.

Research output: Contribution to journalArticle

Open Access
Triticum
Breeding
Genome
Research
Atlases
7 Citations (Scopus)

Targeted cleavage of nad6 mRNA induced by a modified pentatricopeptide repeat protein in plant mitochondria

Colas des Francs-Small, C., Vincis Pereira Sanglard, L. M. & Small, I., 11 Oct 2018, In : Communications Biology . 7 p., 166.

Research output: Contribution to journalArticle

Open Access
Plant Proteins
Mitochondrial Genes
Mitochondria
RNA-Binding Proteins
Messenger RNA
2017
1 Citation (Scopus)
130 Downloads (Pure)

In Arabidopsis thaliana distinct alleles encoding mitochondrial RNA PROCESSING FACTOR 4 support the generation of additional 5′ termini of ccmB transcripts

Stoll, K., Jonietz, C., Schleicher, S., des Francs-Small, C. C., Small, I. & Binder, S., Apr 2017, In : Plant Molecular Biology. 93, 6, p. 659-668

Research output: Contribution to journalArticle

Open Access
File
Arabidopsis
Ecotype
Arabidopsis thaliana
Alleles
RNA
14 Citations (Scopus)

In silico identification of candidate genes for fertility restoration in cytoplasmic male sterile perennial ryegrass (Lolium perenne L.)

Sykes, T., Yates, S., Nagy, I., Asp, T., Small, I. & Studer, B., 1 Feb 2017, In : Genome Biology and Evolution. 9, 2, p. 351-362 12 p.

Research output: Contribution to journalArticle

Open Access
Lolium
Genetic Association Studies
Lolium perenne
Computer Simulation
Fertility
20 Citations (Scopus)
NADH Dehydrogenase
NADH dehydrogenase
Arabidopsis
Arabidopsis thaliana
Seeds
23 Citations (Scopus)

The nuclear and organellar tRNA-derived RNA fragment population in Arabidopsis thaliana is highly dynamic

Cognat, V., Morelle, G., Megel, C., Lalande, S., Molinier, J., Vincent, T., Small, I., Duchene, A-M. & Marechal-Drouard, L., 7 Apr 2017, In : Nucleic Acids Research. 45, 6, p. 3460-3472 13 p.

Research output: Contribution to journalArticle

Open Access
12 Citations (Scopus)

The pentatricopeptide repeat protein EMB2654 is essential for trans-splicing of a chloroplast small ribosomal subunit transcript

Aryamanesh, N., Ruwe, H., Sanglard, L. V. P., Eshraghi, L., Bussell, J. D., Howell, K. A., Small, I. & des Francs-Small, C. C., 1 Feb 2017, In : Plant Physiology. 173, 2, p. 1164-1176 13 p.

Research output: Contribution to journalArticle

Open Access
Trans-Splicing
trans-splicing
Small Ribosome Subunits
Chloroplasts
Plastids
39 Citations (Scopus)

What can we do with 1000 plastid genomes?

Tonti-Filippini, J., Nevill, P. G., Dixon, K. & Small, I., May 2017, In : The Plant Journal. 90, 4, p. 808-818

Research output: Contribution to journalArticle

Plastid Genomes
Genome
genome
rights of way
Plastids
2016
16 Citations (Scopus)

Evolutionary plasticity of restorer-of-fertility-like proteins in rice.

Melonek, J. A., Stone, J. D. & Small, I., 24 Oct 2016, In : Scientific Reports. 6, 35152.

Research output: Contribution to journalArticle

Open Access
Fertility
Proteins
Male Infertility
Genes
Brachypodium
29 Citations (Scopus)
136 Downloads (Pure)

Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia

Williams, A. V., Miller, J. T., Small, I., Nevill, P. G. & Boykin, L. M., Mar 2016, In : Molecular Phylogenetics and Evolution. 96, p. 1-8

Research output: Contribution to journalArticle

Open Access
File
Chloroplast Genome
Acacia
chloroplast
genome
Genome
18 Citations (Scopus)
297 Downloads (Pure)

Mitochondrial Defects Confer Tolerance against Cellulose Deficiency

Hu, Z., Vanderhaeghen, R., Cools, T., Wang, Y., De Clercq, I., Leroux, O., Nguyen, L., Belt, K., Millar, A. H., Audenaert, D., Hilson, P., Small, I., Mouille, G., Vernhettes, S., Van Breusegem, F., Whelan, J., Höfte, H. & De Veylder, L., Sep 2016, In : The Plant Cell. 28, 9, p. 2276-2290 15 p.

Research output: Contribution to journalArticle

Open Access
File
Cellulose
Cell Wall
cellulose
cell walls
cellulose synthase
95 Citations (Scopus)
439 Downloads (Pure)

Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants

Cheng, S., Gutmann, B., Zhong, X., Ye, Y., Fisher, M., Bai, F., Castleden, I., Song, Y., Song, B., Huang, J., Liu, X., Xu, X., Lim, B. L., Bond, C., Yiu, S. M. & Small, I., 12 Feb 2016, In : The Plant Journal. 85, 4, p. 532-547

Research output: Contribution to journalArticle

Open Access
File
Embryophyta
RNA Editing
RNA editing
embryophytes
RNA
30 Citations (Scopus)

SOT1, a pentatricopeptide repeat protein with a small MutS-related domain, is required for correct processing of plastid 23S-4.5S rRNA precursors in Arabidopsis thaliana.

Wu, W., Liu, S., Ruwe, H., Zhang, D., Melonek, J., Zhu, Y., Hu, X., Gusewski, S., Yin, P., Small, I. D., Howell, K. & Huang, J., Mar 2016, In : Plant Journal. 85, 5, p. 607-621 15 p.

Research output: Contribution to journalArticle

Thylakoids
Plastids
RNA Precursors
Arabidopsis
thylakoids
2015
40 Citations (Scopus)
211 Downloads (Pure)

AEF1/MPR25 is implicated in RNA editing of plastid atpF and mitochondrial nad5, and also promotes atpF splicing in Arabidopsis and rice

Yap, A., Kindgren, P., Colas Des Francs-Small, C., Kazama, T., Tanz, S., Toriyama, K. & Small, I., 24 Feb 2015, In : The Plant Journal. 81, 5, p. 661-669 9 p.

Research output: Contribution to journalArticle

Open Access
File
RNA Editing
RNA editing
Plastids
Arabidopsis
plastids
38 Citations (Scopus)

Predictable alteration of sequence recognition by RNA editing factors from arabidopsis

Kindgren, P., Yap, A., Bond, C. & Small, I., 3 Feb 2015, In : The Plant Cell. 27, 2, p. 403-416

Research output: Contribution to journalArticle

Open Access
RNA Editing
RNA editing
Arabidopsis
Nucleotides
nucleotides
30 Citations (Scopus)

Surveillance and cleavage of eukaryotic tRNAs

Megel, C., Morelle, G., Lalande, S., Duchêne, A. M., Small, I. & Maréchal-Drouard, L., 15 Jan 2015, In : International Journal of Molecular Sciences. 16, 1, p. 1873-1893 21 p.

Research output: Contribution to journalArticle

Open Access
ribonucleic acids
surveillance
Transfer RNA
cleavage
fragments
29 Citations (Scopus)
279 Downloads (Pure)

The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene

Williams, A. V., Boykin, L., Howell, K., Nevill, P. & Small, I., 8 May 2015, In : PLoS One. 10, 5, 19 p., e0125768.

Research output: Contribution to journalArticle

Open Access
File
Chloroplast Genome
Acacia
Genes
Fabaceae
Mimosoideae
20 Citations (Scopus)
365 Downloads (Pure)

The design and structural characterization of a synthetic pentatricopeptide repeat protein

Gully, B., Shah, K., Lee, M., Shearston, K., Smith, N., Sadowska, A., Blythe, A., Bernath-Levin, K., Stanley, W., Small, I. & Bond, C., Feb 2015, In : ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY. 71, 2, p. 196-208

Research output: Contribution to journalArticle

Open Access
File
Proteins
RNA-Binding Proteins
Consensus Sequence
RNA
RNA Editing
35 Citations (Scopus)

The solution structure of the pentatricopeptide repeat protein PPR10 upon binding atpH RNA

Gully, B., Cowieson, N., Stanley, W., Shearston, K., Small, I., Barkan, A. & Bond, C., 18 Feb 2015, In : Nucleic Acids Research. 43, 3, p. 1918-1926

Research output: Contribution to journalArticle

Open Access
RNA
Proteins
Amino Acid Motifs
Synchrotrons
RNA-Binding Proteins
2014
41 Citations (Scopus)

NMAT4, A maturase factor required for nad1 pre-mRNA processing and maturation, is essential for holocomplex I biogenesis in Arabidopsis mitochondria

Cohen, S., Zmudjak, M., Colas Des Francs-Small, C., Malik, S., Shaya, F., Keren, I., Belausov, E., Many, Y., Brown, G. G., Small, I. & Ostersetzer-Biran, O., Apr 2014, In : The Plant Journal. 78, 2, p. 253-268

Research output: Contribution to journalArticle

Open Access
RNA Precursors
Arabidopsis
Introns
introns
Mitochondria
32 Citations (Scopus)

Quantitative analysis of motifs contributing to the interaction between PLS-subfamily members and their target RNA sequences in plastid RNA editing

Okuda, K., Shoki, H., Arai, M., Shikanai, T., Small, I. & Nakamura, T., Dec 2014, In : The Plant Journal. 80, 5, p. 870-882

Research output: Contribution to journalArticle

Open Access
RNA Editing
RNA editing
Plastids
plastids
quantitative analysis
65 Citations (Scopus)

Small kernel 1 encodes a pentatricopeptide repeat protein required for mitochondrial nad7 transcript editing and seed development in maize (Zea mays) and rice (Oryza sativa)

Li, X., Zhang, Y., Hou, M., Sun, F., Shen, Y., Xiu, Z., Wang, X., Chen, Z., Sun, S., Small, I. & Tan, B., Sep 2014, In : Plant Journal. 79, 5, p. 797-809

Research output: Contribution to journalArticle

Open Access
Mitochondrial Proteins
NADH dehydrogenase (ubiquinone)
seed development
Endosperm
Zea mays
88 Citations (Scopus)

SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome

Hooper, C., Tanz, S., Castleden, I., Vacher, M., Small, I. & Millar, H., 1 Dec 2014, In : Bioinformatics. 30, 23, p. 3356-3364

Research output: Contribution to journalArticle

Arabidopsis
Proteome
Green Fluorescent Proteins
Proteins
Protein
59 Citations (Scopus)

The cytidine deaminase signature HxE(x)nCxxC of DYW1 binds zinc and is necessary for RNA editing of ndhD-1

Boussardon, C., Avon, A., Kindgren, P., Bond, C., Challenor, M., Lurin, C. & Small, I., 2014, In : New Phytologist. 203, 4, p. 1090-1095

Research output: Contribution to journalArticle

Open Access
Cytidine Deaminase
RNA Editing
RNA editing
Zinc
zinc
36 Citations (Scopus)
Open Access
NADH dehydrogenase (ubiquinone)
Arabidopsis
Organelles
Introns
organelles
39 Citations (Scopus)

The potential for manipulating RNA with pentatricopeptide repeat proteins

Yagi, Y., Nakamura, T. & Small, I., 28 May 2014, In : The Plant Journal. 78, 5, p. 772-782 11 p.

Research output: Contribution to journalArticle

Open Access
RNA
RNA-Binding Proteins
RNA-binding proteins
Proteins
proteins
14 Citations (Scopus)
Open Access
plastids
proteinases
Arabidopsis
prediction
genes
2013
28 Citations (Scopus)
53 Downloads (Pure)

A DYW-protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype

Schallenberg-Rudinger, M., Kindgren, P., Zehrmann, A., Small, I. & Knoop, V., Nov 2013, In : The Plant Journal. 76, 3, p. 420–432

Research output: Contribution to journalArticle

Open Access
File
Bryopsida
Physcomitrella
RNA Editing
RNA editing
Bryophyta
82 Citations (Scopus)

A reevaluation of dual-targeting of proteins to mitochondria and chloroplasts

Carrie, C. & Small, I., Feb 2013, In : BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH. 1833, 2, p. 253-259

Research output: Contribution to journalArticle

Open Access
Protein Transport
Chloroplasts
Mitochondria
Proteins
Organelles
56 Citations (Scopus)

Is agriculture driving the diversification of the Bemisia tabaci species complex (Hemiptera: Sternorrhyncha: Aleyrodidae)? Dating, diversification and biogeographic evidence revealed

Boykin, L. M., Bell, C. D., Evans, G., Small, I. & De Barro, P. J., 18 Oct 2013, In : BMC Evolutionary Biology. 13, 228, 10 p.

Research output: Contribution to journalArticle

Open Access
Sternorrhyncha
Bemisia tabaci
species complex
Aleyrodidae
Hemiptera
49 Citations (Scopus)

mCSF1, a nucleus-encoded CRM protein required for the processing of many mitochondrial introns, is involved in the biogenesis of respiratory complexes I and IV in Arabidopsis

Zmudjak, M., Colas Des Francs-Small, C., Keren, I., Shaya, F., Belausov, E., Small, I. & Ostersetzer-Biran, O., Jul 2013, In : New Phytologist. 199, 2, p. 379–394

Research output: Contribution to journalArticle

Electron Transport Complex I
Arabidopsis
Introns
introns
proteins
204 Citations (Scopus)

SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis

Tanz, S. K., Castleden, I., Hooper, C. M., Vacher, M., Small, I. & Millar, A. H., 1 Jan 2013, In : Nucleic Acids Research. 41, Database issue, p. D1185-91

Research output: Contribution to journalArticle

Open Access
Arabidopsis Proteins
Databases
Proteins
Cell Compartmentation
Bayes Theorem
42 Citations (Scopus)

The E domains of pentatricopeptide repeat proteins from different organelles are not functionally equivalent fo RNA editing

Chateigner-Boutin, A-L., Colas Des Francs-Small, C., Fujii, S., Okuda, K., Tanz, S. & Small, I., 2013, In : The Plant Journal. 74, p. 935–945

Research output: Contribution to journalArticle

RNA Editing
RNA editing
Organelles
organelles
Chloroplasts
2012
272 Citations (Scopus)

A Combinatorial Amino Acid Code for RNA Recognition by Pentatricopeptide Repeat Proteins

Barkan, A., Rojas, M., Fujii, S., Yap, A., Chong, Y. S., Bond, C. & Small, I., 16 Aug 2012, In : PLoS Genetics. 8, 8, p. 1-8

Research output: Contribution to journalArticle

Open Access
RNA
amino acid
Amino Acids
amino acids
protein
51 Citations (Scopus)

A PORR domain protein required for rpl2 and ccmFc intron splicing and for the biogenesis of c-type cytochromes in Arabidopsis mitochondria

Colas Des Francs-Small, C., Kroeger, T., Zmudjak, M., Ostersetzer-Biran, O., Rahimi, N., Small, I. & Barkan, A., 2012, In : The Plant Journal. 69, 6, p. 996-1005

Research output: Contribution to journalArticle

59 Citations (Scopus)

Arabidopsis Chloroplast RNA Binding Proteins Cp31A and CP29A Associate with Large Transcript Pools and Confer Cold Stress Tolerance by Influencing Multiple Chloroplast RNA Processing Steps

Kupsch, C., Ruwe, H., Gusewski, S., Tillich, M., Small, I. & Schmitz-Linneweber, C., 2012, In : Plant Cell. 24, p. 4266-4280

Research output: Contribution to journalArticle