Dave Edwards

Professor

  • The University of Western Australia (M084), 35 Stirling Highway,

    6009 Crawley

    Australia

  • 4555 Citations
  • 27 h-Index
20052018

Research Output 2005 2018

2018

Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea

Kaashyap, M., Ford, R., Kudapa, H., Jain, M., Edwards, D., Varshney, R. & Mantri, N. 1 Dec 2018 In : Scientific Reports. 8, 1, 4855

Research output: Contribution to journalArticle

Open Access
Cicer
Salinity
Morphogenesis
Cell Wall
Salts

Exploring the genetic and adaptive diversity of a pan-Mediterranean crop wild relative: narrow-leafed lupin

Mousavi-Derazmahalleh, M., Bayer, P. E., Nevado, B., Hurgobin, B., Filatov, D., Kilian, A., Kamphuis, L. G., Singh, K. B., Berger, J. D., Hane, J. K., Edwards, D., Erskine, W. & Nelson, M. N. Apr 2018 In : Theoretical and Applied Genetics. 131, 4, p. 887–901 15 p.

Research output: Contribution to journalArticle

Open Access
Mediterranean Region
Lupinus
wild relatives
Climate Change
Genome-Wide Association Study
1 Citations

Genome-wide identification and comparative analysis of NBS-LRR resistance genes in Brassica napus

Alamery, S., Tirnaz, S., Bayer, P., Tollenaere, R., Chaloub, B., Edwards, D. & Batley, J. 1 Jan 2018 In : Crop and Pasture Science. 69, 1, p. 79-93 15 p.

Research output: Contribution to journalArticle

Brassica napus
leucine
binding sites
nucleotides
genome

Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus

Hurgobin, B., Golicz, A. A., Bayer, P. E., Chan, C-K. K., Tirnaz, S., Dolatabadian, A., Schiessl, S. V., Samans, B., Montenegro, J. D., Parkin, I. A. P., Pires, J. C., Chalhoub, B., King, G. J., Snowdon, R., Batley, J. & Edwards, D. 10 Jan 2018 In : Plant Biotechnology Journal. p. 1-10

Research output: Contribution to journalArticle

Open Access
Brassica napus
major genes
Genes
genes
Glucosinolates
Open Access
marker-assisted selection
drought tolerance
single nucleotide polymorphism
chromosome mapping
genome

Single-cell genomic analysis in plants

Yuan, Y., Lee, H. T., Hu, H., Scheben, A. & Edwards, D. 22 Jan 2018 In : Genes. 9, 1, 50

Research output: Contribution to journalReview article

Open Access
Single-Cell Analysis
Plant Cells
Genomics
Cell Separation
Cell Lineage
8 Citations

Speed breeding is a powerful tool to accelerate crop research and breeding

Watson, A. , Ghosh, S. , Williams, M. J. , Cuddy, W. S. , Simmonds, J. , Rey, M. D. , Asyraf Md Hatta, M. , Hinchliffe, A. , Steed, A. , Reynolds, D. , Adamski, N. M. , Breakspear, A. , Korolev, A. , Rayner, T. , Dixon, L. E. , Riaz, A. , Martin, W. , Ryan, M. , Edwards, D. , Batley, J. & 15 others Raman, H., Carter, J., Rogers, C., Domoney, C., Moore, G., Harwood, W., Nicholson, P., Dieters, M. J., Delacy, I. H., Zhou, J., Uauy, C., Boden, S. A., Park, R. F., Wulff, B. B. H. & Hickey, L. T. 1 Jan 2018 In : Nature Plants. 4, 1, p. 23-29 7 p.

Research output: Contribution to journalArticle

breeding
crops
lighting
greenhouses
cost effectiveness
2017
17 Citations

A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant–microbe interactions and legume evolution

Hane, J. K. , Ming, Y. , Kamphuis, L. G. , Nelson, M. N. , Garg, G. , Atkins, C. A. , Bayer, P. E. , Bravo, A. , Bringans, S. D. , Cannon, S. , Edwards, D. , Foley, R. , Gao, L. L. , Harrison, M. J. , Huang, W. , Hurgobin, B. , Li, S. , Liu, C. W. , McGrath, A. , Morahan, G. & 4 others Murray, J., Weller, J. L., Jian, J. & Singh, K. B. 1 Mar 2017 In : Plant Biotechnology Journal. 15, 3, p. 318-330 13 p.

Research output: Contribution to journalArticle

Open Access
Lupinus
Lupinus angustifolius
health foods
Fabaceae
legumes
4 Citations

An advanced reference genome of Trifolium subterraneum L. reveals genes related to agronomic performance

Kaur, P., Bayer, P. E., Milec, Z., Vrána, J., Yuan, Y., Appels, R., Edwards, D., Batley, J., Nichols, P., Erskine, W. & Doležel, J. 12 Jul 2017 In : Plant Biotechnology Journal. 15, 8, p. 1034-1046 13 p.

Research output: Contribution to journalArticle

Open Access
Trifolium
Trifolium subterraneum
agronomic traits
Medicago
Genome
4 Citations

Assembly and comparison of two closely related Brassica napus genomes

Bayer, P. E., Hurgobin, B., Golicz, A. A., Chan, C-K. K., Yuan, Y., Lee, H., Renton, M., Meng, J., Li, R., Long, Y., Zou, J., Bancroft, I., Chalhoub, B., King, G. J., Batley, J. & Edwards, D. 14 Jun 2017 In : Plant Biotechnology Journal. 15, 12, p. 1-9 9 p.

Research output: Contribution to journalArticle

Open Access
Brassica napus
Genome
genome
Genes
genes
1 Citations

Assessing and Exploiting Functional Diversity in Germplasm Pools to Enhance Abiotic Stress Adaptation and Yield in Cereals and Food Legumes

Dwivedi, S. L., Scheben, A., Edwards, D., Spillane, C. & Ortiz, R. 29 Aug 2017 In : Frontiers in Plant Science. 8, 30 p., 1461

Research output: Contribution to journalReview article

Open Access

BioNanoAnalyst: A visualisation tool to assess genome assembly quality using BioNano data

Yuan, Y., Bayer, P. E., Scheben, A., Chan, C. K. K. & Edwards, D. 30 Jun 2017 In : BMC Bioinformatics. 18, 1, 9 p., 323

Research output: Contribution to journalArticle

Open Access
Genome
Visualization
Genes
Software
DNA Sequencing
1 Citations

Climate Clever Clovers: New Paradigm to Reduce the Environmental Footprint of Ruminants by Breeding Low Methanogenic Forages Utilizing Haplotype Variation

Kaur, P., Appels, R., Bayer, P. E., Keeble-Gagnere, G., Wang, J., Hirakawa, H., Shirasawa, K., Vercoe, P., Stefanova, K., Durmic, Z., Nichols, P., Revell, C., Isobe, S. N., Edwards, D. & Erskine, W. 5 Sep 2017 In : Frontiers in Plant Science. 8, 10 p., 1463

Research output: Contribution to journalArticle

Open Access

Copy number variation and disease resistance in plants

Dolatabadian, A., Patel, D. A., Edwards, D. & Batley, J. Dec 2017 In : Theoretical and Applied Genetics. 130, 12, p. 2479-2490 12 p.

Research output: Contribution to journalArticle

Open Access
File
Disease Resistance
disease resistance
Plant Dispersal
Plant Genome
Plant Diseases

Databases for wheat genomics and crop improvement

Yuan, Y., Scheben, A., Chan, C. K. K. & Edwards, D. 1 Jan 2017 Wheat Biotechnology : Methods and Protocols. Bhalla, P. L. & Singh, M. B. (eds.). United States: Humana Press, p. 277-291 15 p. (Methods in Molecular Biology; vol. 1679)

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Genomics
Triticum
Databases
Research Personnel
Genome

Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia

Schneider, M. V., Griffin, P. C., Tyagi, S., Flannery, M., Dayalan, S., Gladman, S., Watson-Haigh, N., Bayer, P. E., Charleston , M., Cooke, I., Cook, R., Edwards, R. J., Edwards, D., Gorse, D., McConville, M., Powell, D., Wilkins , M. R. & Lonie, . A. 30 Jun 2017 In : Briefings in Bioinformatics. p. 1-6 6 p.

Research output: Contribution to journalArticle

Open Access
Biological Science Disciplines
Bioinformatics
Computational Biology
Research Personnel
Research
4 Citations

Genome analysis identified novel candidate genes for ascochyta blight resistance in chickpea using whole genome re-sequencing data

Li, Y., Ruperao, P., Batley, J., Edwards, D., Davidson, J., Hobson, K. & Sutton, T. 17 Mar 2017 In : Frontiers in Plant Science. 8, 359

Research output: Contribution to journalArticle

Open Access
Ascochyta
blight
single nucleotide polymorphism
genome
phosphotransferases (kinases)
5 Citations

Genome editors take on crops: Genome editors take on crops Genome editing technologies may help to enhance global food security

Scheben, A. & Edwards, D. 17 Mar 2017 In : Science. 355, 6330, p. 1122-1123 2 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Food Supply
Genome
Technology
Climate Change
2 Citations

Genome-wide association study of genetic control of seed fatty acid biosynthesis in Brassica napus

Gacek, K., Bayer, P. E., Bartkowiak-Broda, I., Szala, L., Bocianowski, J., Edwards, D. & Batley, J. 20 Jan 2017 In : Frontiers in Plant Science. 7, 2062

Research output: Contribution to journalArticle

Open Access
Brassica napus
biosynthesis
fatty acids
seeds
stearoyl-CoA desaturase
17 Citations

Genotyping-by-sequencing approaches to characterize crop genomes: choosing the right tool for the right application

Scheben, A., Batley, J. & Edwards, D. 1 Feb 2017 In : Plant Biotechnology Journal. 15, 2, p. 149-161 13 p.

Research output: Contribution to journalReview article

Open Access
File
genotyping
Genome
Costs and Cost Analysis
genome
crops
7 Citations

Improvements in Genomic Technologies: Application to Crop Genomics

Yuan, Y., Bayer, P. E., Batley, J. & Edwards, D. Jun 2017 In : TRENDS IN BIOTECHNOLOGY. 35, 6, p. 547-558

Research output: Contribution to journalReview article

Genomics
Crops
Genes
Genome
Technology
3 Citations

RNA-Seq and metabolic flux analysis of Tetraselmis sp. M8 during nitrogen starvation reveals a two-stage lipid accumulation mechanism

Lim, D. K. Y., Schuhmann, H., Thomas-Hall, S. R., Chan, K. C. K., Wass, T. J., Aguilera, F., Adarme-Vega, T. C., Dal'Molin, C. G. O., Thorpe, G. J., Batley, J., Edwards, D. & Schenk, P. M. 1 Nov 2017 In : Bioresource Technology. 244, Part 2, p. 1281-1293 13 p.

Research output: Contribution to journalArticle

RNA
starvation
Lipids
Nitrogen
lipid

runBNG: a software package for BioNano genomic analysis on the command line

Yuan, Y., Bayer, P. E., Lee, H-T. & Edwards, D. 1 Oct 2017 In : Bioinformatics. 33, 19, p. 3107-3109 3 p.

Research output: Contribution to journalArticle

2 Citations

SNP discovery using a pangenome: Has the single reference approach become obsolete?

Hurgobin, B. & Edwards, D. 1 Mar 2017 In : Biology. 6, 1, 21

Research output: Contribution to journalReview article

Open Access
Polymorphism
single nucleotide polymorphism
Single Nucleotide Polymorphism
Nucleotides
Genes
15 Citations

The pangenome of hexaploid bread wheat

Montenegro, J. D., Golicz, A. A., Bayer, P. E., Hurgobin, B., Lee, H., Chan, C. K. K., Visendi, P., Lai, K., Doležel, J., Batley, J. & Edwards, D. 2017 (Accepted/In press) In : The Plant Journal.

Research output: Contribution to journalArticle

Bread
hexaploidy
Triticum
wheat
Genes
8 Citations

Towards CRISPR/Cas crops - bringing together genomics and genome editing

Scheben, A., Wolter, F., Batley, J., Puchta, H. & Edwards, D. Nov 2017 In : New Phytologist. 216, 3, p. 682-698 17 p.

Research output: Contribution to journalReview article

2016
1 Citations

Advances in genomics for adapting crops to climate change

Scheben, A., Yuan, Y. & Edwards, D. 1 Oct 2016 In : Current Plant Biology. 6, p. 2-10 9 p.

Research output: Contribution to journalReview article

Open Access
Climate Change
Genomics
Climate change
Crops
Breeding
28 Citations

A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome

Clarke, W. E. , Higgins, E. E. , Plieske, J. , Wieseke, R. , Sidebottom, C. , Khedikar, Y. , Batley, J. , Edwards, D. , Meng, J. , Li, R. , Lawley, C. T. , Pauquet, J. , Laga, B. , Cheung, W. , Iniguez-Luy, F. , Dyrszka, E. , Rae, S. , Stich, B. , Snowdon, R. J. , Sharpe, A. G. & 2 others Ganal, M. W. & Parkin, I. A. P. 2016 In : Theoretical and Applied Genetics. 129, 10, p. 1887-1899

Research output: Contribution to journalArticle

Open Access
Brassica napus
Diploidy
genotyping
single nucleotide polymorphism
Single Nucleotide Polymorphism
7 Citations

Analytical and decision support tools for genomics-assisted breeding

Varshney, R., Singh, V. K., Hickey, J. M., Xun, X., Marshall, D. F., Wang, J., Edwards, D. & Ribaut, J. Apr 2016 In : Trends in Plant Science. 21, 4, p. 354-363

Research output: Contribution to journalReview article

Open Access
genomics
phenotype
breeding
haplotypes
crops
2 Citations

An efficient approach to BAC based assembly of complex genomes

Visendi, P., Berkman, P. J., Hayashi, S., Golicz, A. A., Bayer, P., Ruperao, P., Hurgobin, B., Montenegro, J., Chan, K., Staňková, H., Batley, J., Šimková, H., Doležel, J. & Edwards, D. 20 Jan 2016 In : Plant Methods. 12, 1, p. 1

Research output: Contribution to journalArticle

Open Access
Bacterial Artificial Chromosomes
bacterial artificial chromosomes
Genome
genome
sequence analysis
1 Citations

Chloroplast genomics: Expanding resources for an evolutionary conserved miniature molecule with enigmatic applications

Sablok, G., Mudunuri, S. B., Edwards, D. & Ralph, P. J. 1 Nov 2016 In : Current Plant Biology. 7-8, p. 34-38 5 p.

Research output: Contribution to journalArticle

Open Access
organelle genome
Chloroplasts
Genomics
chloroplasts
Genes
2 Citations

Development and Validation of Thinopyrum elongatum–Expressed Molecular Markers Specific for the Long Arm of Chromosome 7E

Gou, L., Hattori, J., Fedak, G., Balcerzak, M., Sharpe, A., Visendi, P., Edwards, D., Tinker, N., Wei, Y., Chen, G. & Ouellet, T. Jan 2016 In : Crop Science. 56, 1, p. 354-364

Research output: Contribution to journalArticle

Open Access
File
Thinopyrum elongatum
chromosomes
genetic markers
wheat
RNA
7 Citations

Genome-wide association study identifies new loci for resistance to leptosphaeria maculans in canola

Raman, H., Raman, R., Coombes, N., Song, J., Diffey, S., Kilian, A., Lindbeck, K., Barbulescu, D. M., Batley, J., Edwards, D., Salisbury, P. A. & Marcroft, S. 24 Oct 2016 In : Frontiers in Plant Science. 7, OCTOBER, 1513

Research output: Contribution to journalArticle

Open Access
Plenodomus lingam
canola
loci
Brassica napus
mature plants
26 Citations

Global agricultural intensification during climate change: a role for genomics

Abberton, M. , Batley, J. , Bentley, A. , Bryant, J. , Cai, H. , Cockram, J. , Costa De Oliveira, A. , Cseke, L. J. , Dempewolf, H. , De Pace, C. , Edwards, D. , Gepts, P. , Greenland, A. , Hall, A. E. , Henry, R. , Hori, K. , Howe, G. T. , Hughes, S. , Humphreys, M. , Lightfoot, D. & 10 others Marshall, A., Mayes, S., Nguyen, H. T., Ogbonnaya, F. C., Ortiz, R., Paterson, A. H., Tuberosa, R., Valliyodan, B., Varshney, R. & Yano, M. Apr 2016 In : Plant Biotechnology Journal. 14, 4, p. 1095–1098

Research output: Contribution to journalReview article

Open Access
Climate Change
Genomics
Agriculture
Breeding
specialty crops

Plant Bioinformatics: Methods and Protocols (2nd edition)

Edwards, D. 2016 2 ed. Springer. 363 p. (Methods in Molecular Biology; vol. 1374)

Research output: Book/ReportEdited book/Anthology

Plant Genomics and Climate Change

Edwards, D. (ed.) & Batley, J. (ed.) 2016 Springer-Verlag London Ltd.

Research output: Book/ReportEdited book/Anthology

7 Citations
Open Access
File
bioinformatics
climate change
genomics
crops
breeding
6 Citations

The emergence of molecular profiling and omics techniques in seagrass biology; furthering our understanding of seagrasses

Davey, P. A., Pernice, M., Sablok, G., Larkum, A., Lee, H. T., Golicz, A., Edwards, D., Dolferus, R. & Ralph, P. 2016 In : Functional and Integrative Genomics. 16, 5, p. 465-480 16 p.

Research output: Contribution to journalReview article

Climate Change
Research
Technology
Berlin
Publications
7 Citations

The genome of a southern hemisphere seagrass species (Zostera muelleri)

Lee, H., Golicz, A. A., Bayer, P. E., Jiao, Y., Tang, H., Paterson, A. H., Sablok, G., Krishnaraj, R. R., Chan, C-K. K., Batley, J., Kendrick, G. A., Larkum, A. W. D., Ralph, P. J. & Edwards, D. Sep 2016 In : Plant Physiology. 172, 1, p. 272-283

Research output: Contribution to journalArticle

Open Access
Zosteraceae
Zostera
Oceans and Seas
Carbon Sequestration
Genome
2 Citations

The impact of genomics technology on adapting plants to climate change

Edwards, D. 2016 Plant Genomics and Climate Change. Edwards, D. & Batley, J. (eds.). New York: Springer-Verlag London Ltd., p. 173-178 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Climate Change
Genomics
genomics
crop improvement
climate change

The More the Merrier? Investigating Copy Number Variation in Brassica Disease Resistance

Batley, J., Dolatabadian, A., Yang, H., Severn-Ellis, A., Alamery, S., Tollenaere, R., Bayer, P., Hurgobin, B., Golicz, A. A. & Edwards, D. 2016

Research output: Contribution to conferencePoster

17 Citations

The pangenome of an agronomically important crop plant Brassica oleracea

Golicz, A. A., Bayer, P. E., Barker, G. C., Edger, P. P., Kim, H. R., Martinez, P. A., Chan, C. K. K., Severn-Ellis, A., McCombie, W. R., Parkin, I. A. P., Paterson, A. H., Pires, J. C., Sharpe, A. G., Tang, H., Teakle, G. R., Town, C. D., Batley, J. & Edwards, D. 11 Nov 2016 In : Nature Communications. 7, 13390

Research output: Contribution to journalArticle

Open Access
Brassica
crops
genes
Crops
Genes
18 Citations

Towards plant pangenomics

Golicz, A. A., Batley, J. & Edwards, D. 2016 In : Plant Biotechnology Journal. 14, 4, p. 1099–1105

Research output: Contribution to journalReview article

2015
2 Citations
Open Access
46 Citations

Application of genomics-assisted breeding for generation of climate resilient crops: Progress and prospects

Kole, C. , Muthamilarasan, M. , Henry, R. , Edwards, D. , Sharma, R. , Abberton, M. , Batley, J. , Bentley, A. , Blakeney, M. , Bryant, J. , Cai, H. , Cakir, M. , Cseke, L. J. , Cockram, J. , De Oliveira, A. C. , De Pace, C. , Dempewolf, H. , Ellison, S. , Gepts, P. , Greenland, A. & 20 others Hall, A., Hori, K., Hughes, S., Humphreys, M. W., Iorizzo, M., Ismail, A. M., Marshall, A., Mayes, S., Nguyen, H. T., Ogbonnaya, F. C., Ortiz, R., Paterson, A. H., Simon, P. W., Tohme, J., Tuberosa, R., Valliyodan, B., Varshney, R. K., Wullschleger, S. D., Yano, M. & Prasad, M. 11 Aug 2015 In : Frontiers in Plant Science. 6, AUG, p. Article 563

Research output: Contribution to journalArticle

Open Access
climate
genomics
breeding
climate change
crops
4 Citations

Bioinformatics: Identification of Markers from Next-Generation Sequence Data

Ruperao, P. & Edwards, D. 2015 Plant Genotyping. Batley, J. (ed.). 1 ed. United States: Springer, p. 29 - 47

Research output: Chapter in Book/Report/Conference proceedingChapter

26 Citations

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes

Stankova, H., Hastie, A. R., Chan, S., Vrana, J., Tulpova, Z., Kubalakova, M., Visendi, P., Hayashi, S., Luo, M., Batley, J., Edwards, D., Dolezel, J. & Simkova, H. 2015 In : Plant Biotechnology Journal. 2015, p. 1-9

Research output: Contribution to journalArticle

Open Access

Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene

Staňková, H., Valárik, M., Lapitan, N. L. V., Berkman, P. J., Batley, J., Edwards, D., Luo, M. C., Tulpová, Z., Kubaláková, M., Stein, N., Doležel, J. & Šimková, H. 2015 In : Theoretical and Applied Genetics. 128, 7, p. 1373-1383

Research output: Contribution to journalArticle

Diuraphis noxia
Aphids
Genomics
Triticum
genomics