Personal profile
Biography
To view a managed list of my publications, please go to Google Scholar.
I gained an Honours degree in agriculture from the University of Nottingham and a PhD from the Department of Plant Science, University of Cambridge, UK. I have engaged in research in a range of organisms but with a focus on crop plant genomics. Following my PhD studies which identified functionally conserved genes between plants and fungi, I worked briefly in the Genetics Department of the University of Cambridge on rice genome structure before joining Long Ashton Research Station, Bristol, UK. During my time in Bristol, I studied tissue specific gene regulation, cereal gene function and bioinformatics. We developed cereal microarrays for both high throughput transposon mutagenesis and gene expression profiling along with computational tools for sequence data analysis and molecular marker discovery.
I joined the Victorian Department of Primary Industries in 2002 to lead a team in Brassica genomics and establish capabilities in bioinformatics. I established a strawberry genomics program and led Australia’s participation in the Multinational Brassica Genome Project. The computational biology group was particularly successful, with established international linkages and capabilities demonstrated through student and staff training as well as numerous peer reviewed publications.
In 2007, I moved to the University of Queensland as an Associate Professor (level D) to support bioinformatics for the Australian Centre for Plant Functional Genomics and establish a research group in applied bioinformatics. In 2011 I was promoted to Professor (level E). During this period, I established a dedicated applied bioinformatics research group and contributed to honours and masters level courses in plant science and bioinformatics. Research during this period led to 69 peer reviewed publications including high impact journals such as Science (4), Nature Genetics, Nature Biotechnology, Nature Communications and Genome Biology (3), funded by more than $10m in competitive research grants. In January 2015 I accepted an ongoing position as Professor in cereal genomics at the University of Western Australia. My current research activities include the characterisation of complex plant genomes, translational genomics and genome informatics, with a focus on wheat, Brassica and chickpea crops. Details of my current research activities and links to publications are available through my group home page: http://www.appliedbioinformatics.com.au/
Previous positions
PhD University of Cambridge 2000
BSc (Hons) University of Nottingham 1989
Recent posts:
2015 - present Professor, University of Western Australia, Crawley, Australia
2011 - 2015 Professor, University of Queensland, Brisbane, Australia
2007 - 2011 Associate Professor, University of Queensland, Brisbane, Australia
2002 - 2007 Plant Biotechnology Centre, Melbourne, Australia.
1997 - 2002 IACR Long Ashton, University of Bristol, UK.
Research expertise keywords
- Genomics: structure, expression and variation
- Bioinformatics
- Crop improvement
- Evolution
- Climate change
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 13 Climate Action
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Accessing crop genetic diversity via pangenomics
MacNish, T. R., Kopalli, V., Zanini, S. F., Snowdon, R. J., Golicz, A. A. & Edwards, D., Apr 2026, In: Theoretical and Applied Genetics. 139, 4, 21 p., 96.Research output: Contribution to journal › Review article › peer-review
Open Access -
Dissection of local haplotype diversity at soybean rust loci reveals resistance-associated and context-dependent variation patterns in diverse germplasm
Mohamedikbal, S., Al-Mamun, H. A., Marsh, J. I., Upadhyaya, S. R., Batley, J. & Edwards, D., Apr 2026, In: TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 139, 4, 22 p., 107.Research output: Contribution to journal › Article › peer-review
Open Access -
Genome-Wide Association Study: A Soybean Example
Mohamedikbal, S., Anderson, R., Fernandez, C. T., Yuan, Y., Al-Mamun, H. A., Golicz, A. A., Edwards, D. & Bayer, P. E., 2026, Legume Genomics: Methods and Protocols. Jain, M. & Garg, R. (eds.). 2 ed. Humana Press Inc., Vol. 2977. p. 97-108 12 p. (Methods in Molecular Biology; vol. 2977).Research output: Chapter in Book/Conference paper › Chapter
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Haplotype applications in genomic selection
MacNish, T. R., Bergmann, T. & Edwards, D., Dec 2026, In: Genome Biology. 27, 1, 18.Research output: Contribution to journal › Review article › peer-review
Open Access -
Legume Pangenome Construction Using an Iterative Mapping and Assembly Approach
MacNish, T. R., Hu, H., Yuan, Y., Bayer, P. E., Tay Fernandez, C. G., Scheben, A., Golicz, A. A. & Edwards, D., 2026, Legume Genomics: Methods and Protocols. Jain, M. & Garg, R. (eds.). 2 ed. Humana Press Inc., Vol. 2977. p. 1-14 14 p. (Methods in Molecular Biology; vol. 2977).Research output: Chapter in Book/Conference paper › Chapter
Datasets
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Pigeon pea pangenome contig assembly, annotation, SNPs, PAV
Zhao, J. (Creator), Bayer, P. (Creator), Ruperao, P. (Creator), Saxena, R. (Creator), Khan, M. A. W. (Creator), Golicz, A. (Creator), Nguyen, H. (Creator), Batley, J. (Creator), Edwards, D. (Creator) & Varshney, R. (Creator), The University of Western Australia, 4 Apr 2019
Dataset
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Supplementary data for manuscript:"High intraspecific diversity of Restorer-of-fertility-like genes in barley"
Melonek, J. (Creator), Zhou, R. (Creator), Bayer, P. (Creator), Edwards, D. (Creator), Stein, N. (Creator) & Small, I. (Creator), The University of Western Australia, 21 Sept 2018
Dataset
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Zostera muelleri seagrass genome data
Lee, J. (Creator) & Edwards, D. B. (Creator), The University of Western Australia, 2016
DOI: 10.4225/23/5ad41a6c77b60, http://appliedbioinformatics.com.au/index.php/Seagrass_Zmu_Genome
Dataset
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Data from: High-throughput genotyping for species identification and diversity assessment in germplasm collections
Mason, A. S. (Creator), Zhang, J. (Creator), Tollenaere, R. (Creator), Vasquez Teuber, P. (Creator), Dalton-Morgan, J. (Creator), Hu, L. (Creator), Yan, G. (Creator), Edwards, D. (Creator), Redden, R. (Creator) & Batley, J. (Creator), DRYAD, 27 Jan 2015
DOI: 10.5061/dryad.c3g5r, https://doi.org/10.5061%2Fdryad.c3g5r and 2 more links, https://zenodo.org/record/5010106, https://zenodo.org/records/5010106 (show fewer)
Dataset
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Jacob_Marsh_Thesis_Supplemental_Material
Marsh, J. (Creator), Edwards, D. (Creator) & Bayer, P. (Creator), The University of Western Australia, 20 Dec 2022
DOI: 10.26182/yvxe-4549
Dataset
File
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Accelerating Genetic Gain: Utilising the B genome diversity in canola
Nelson, M. (Investigator 01), Helliwell, C. (Investigator 02), Cowling, W. (Investigator 03), Chen, S. (Investigator 04), Edwards, D. (Investigator 05), Batley, J. (Investigator 06), Amas, J. (Investigator 07), Bergmann, T. (Investigator 08), McGoram, T. (Investigator 09), Whitford, R. (Investigator 10) & Hayden, M. (Investigator 11)
Grains Research & Development Corporation
1/07/25 → 30/06/29
Project: Research
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ARC Training Centre in Predictive Breeding for Agricultural Futures
Edwards, D. (Investigator 01), Considine, M. (Investigator 02), Taylor, N. (Investigator 03), Millar, H. (Investigator 04) & Batley, J. (Investigator 05)
ARC Australian Research Council
1/04/24 → 31/03/29
Project: Research
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Effective Control of Blackleg of Canola
Batley, J. (Investigator 01), Edwards, D. (Investigator 02), Van De Wouw, A. (Investigator 03) & Idnurm, A. (Investigator 04)
Grains Research & Development Corporation
1/07/23 → 30/06/28
Project: Research
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Investigate genetic strategies to reduce virus spread through aphid vectors
Batley, J. (Investigator 01) & Edwards, D. (Investigator 02)
Grains Research & Development Corporation
1/06/23 → 31/05/27
Project: Research
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GRDC AAGI: Associate Partnership Analytics for the Australian Grains Industry
Bennamoun, M. (Investigator 01), Renton, M. (Investigator 02), Edwards, D. (Investigator 03), Boussaid, F. (Investigator 04) & Fogarty, J. (Investigator 05)
Grains Research & Development Corporation
2/01/23 → 31/05/27
Project: Research