Charlie Bond

Dr, BSc PhD Manc., FRSC

  • The University of Western Australia (M310), 35 Stirling Highway, Room 4.32, Bayliss Building, Perth campus

    6009 Crawley

    Australia

  • 3668 Citations
  • 33 h-Index
1993 …2020
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Research Output 1993 2018

2018

Crystal structure of a SFPQ/PSPC1 heterodimer provides insights into preferential heterodimerization of human DBHS family proteins

Huang, J., Casas Garcia, G. P., Perugini, M. A., Fox, A. H., Bond, C. S. & Lee, M. 27 Apr 2018 In : The Journal of Biological Chemistry. 293, 17, p. 6593-6602 10 p.

Research output: Contribution to journalArticle

Protein Splicing
Drosophila
Dimerization
Crystal structure
Dimers

Functional Domains of NEAT1 Architectural lncRNA Induce Paraspeckle Assembly through Phase Separation

Yamazaki, T., Souquere, S., Chujo, T., Kobelke, S., Chong, Y. S., Fox, A. H., Bond, C. S., Nakagawa, S., Pierron, G. & Hirose, T. 21 Jun 2018 In : Molecular Cell. 701, 6, p. 1038-1053.e7

Research output: Contribution to journalArticle

Long Noncoding RNA
Clustered Regularly Interspaced Short Palindromic Repeats
RNA
RNA Isoforms
Untranslated RNA
3 Citations

Paraspeckles: Where Long Noncoding RNA Meets Phase Separation

Fox, A. H., Nakagawa, S., Hirose, T. & Bond, C. S. Feb 2018 In : Trends in Biochemical Sciences. 43, 2, p. 124-135 12 p.

Research output: Contribution to journalReview article

Long Noncoding RNA
Phase separation
RNA
Proteins
Gene expression
2 Citations

Structural basis of ribosomal peptide macrocyclization in plants

Haywood, J., Schmidberger, J. W., James, A. M., Nonis, S. G., Sukhoverkov, K. V., Elias, M., Bond, C. S. & Mylne, J. S. 31 Jan 2018 In : eLife. 7, e32955

Research output: Contribution to journalArticle

Open Access
asparaginylendopeptidase
Cyclic Peptides
Helianthus
Peptides
Plant Structures

Structure of Aspergillus fumigatus Cytosolic Thiolase: Trapped Tetrahedral Reaction Intermediates and Activation by Monovalent Cations

Marshall, A. C., Bond, C. S. & Bruning, J. B. 2 Mar 2018 In : ACS Catalysis. 8, 3, p. 1973-1989 17 p.

Research output: Contribution to journalArticle

Monovalent Cations
Reaction intermediates
Aspergillus
Acetyl Coenzyme A
Positive ions
2017
1 Citations

Evidence for ancient origins of bowman-birk inhibitors from Selaginella moellendorffii

James, A. M., Jayasena, A. S., Zhang, J., Berkowitz, O., Secco, D., Knott, G. J., Whelan, J., Bond, C. S. & Mylne, J. S. 1 Mar 2017 In : The Plant Cell. 29, 3, p. 461-473 13 p.

Research output: Contribution to journalArticle

Open Access
File
Selaginellaceae
Bowman-Birk inhibitor
Selaginella
Fabaceae
Angiosperms

Evolutionary insights into two plant protein families: Bowman-Birk inhibitors and asparaginyl endopeptidases

James, A. M. 2017 (Unpublished)

Research output: ThesisDoctoral Thesis

File
inhibitor
enzyme
seed
protein
thesis
8 Citations

Non-nuclear Pool of Splicing Factor SFPQ Regulates Axonal Transcripts Required for Normal Motor Development

Thomas-Jinu, S. , Gordon, P. M. , Fielding, T. , Taylor, R. , Smith, B. N. , Snowden, V. , Blanc, E. , Vance, C. , Topp, S. , Wong, C. H. , Bielen, H. , Williams, K. L. , McCann, E. P. , Nicholson, G. A. , Pan-Vazquez, A. , Fox, A. H. , Bond, C. S. , Talbot, W. S. , Blair, I. P. , Shaw, C. E. & 1 others Houart, C. 19 Apr 2017 In : Neuron. 94, 2, p. 322-336.e5

Research output: Contribution to journalArticle

Open Access
File
Axons
Zebrafish
Exome
Motor Neurons
Nuclear Proteins

The biological function, targeting specificity and redesign of PPR RNA editing factors

Sun, Y. 2017 (Unpublished)

Research output: ThesisDoctoral Thesis

File
RNA editing
functional diversity
chloroplasts
2 Citations

Whaddaya Know: A Guide to Uncertainty and Subjectivity in Structural Biology

Mackay, J. P., Landsberg, M. J., Whitten, A. E. & Bond, C. S. 1 Feb 2017 In : TRENDS IN BIOCHEMICAL SCIENCES. 42, 2, p. 155-167 13 p.

Research output: Contribution to journalReview article

Uncertainty
Databases
Small Angle Scattering
X ray crystallography
X Ray Crystallography
2016
2 Citations

A crystallographic study of human NONO (p54nrb): overcoming pathological problems with purification, data collection and noncrystallographic symmetry

Knott, G., Panjikar, S., Thorn, A., Fox, A., Conte, M. R., Lee, M. & Bond, C. Jun 2016 In : Acta Crystallographica Section D-Structural Biology. 72, 6, p. 761-769

Research output: Contribution to journalArticle

File
X-Rays
Protein Splicing
Family Relations
Crystallization
Molecular Structure
8 Citations

Determinants of affinity and specificity in RNA-binding proteins

Helder, S., Blythe, A., Bond, C. & Mackay, J. P. 2016 In : Current Opinion in Structural Biology. 38, p. 83-91

Research output: Contribution to journalArticle

RNA-Binding Proteins
RNA
Avalanches
Long Noncoding RNA
Ribonucleoproteins
45 Citations

Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants

Cheng, S., Gutmann, B., Zhong, X., Ye, Y., Fisher, M., Bai, F., Castleden, I., Song, Y., Song, B., Huang, J., Liu, X., Xu, X., Lim, B. L., Bond, C., Yiu, S. M. & Small, I. 12 Feb 2016 In : The Plant Journal. 85, 4, p. 532-547

Research output: Contribution to journalArticle

Open Access
File
Embryophyta
RNA Editing
RNA editing
embryophytes
RNA
24 Citations

Structural, super-resolution microscopy analysis of paraspeckle nuclear body organization

West, J. A., Mito, M., Kurosaka, S., Takumi, T., Tanegashima, C., Chujo, T., Yanaka, K., Kingston, R. E., Hirose, T., Bond, C., Fox, A. & Nakagawa, S. 26 Sep 2016 In : Journal of Cell Biology. 214, 7, p. 817-830

Research output: Contribution to journalArticle

Long Noncoding RNA
Physiological Phenomena
RNA Sequence Analysis
RNA-Binding Proteins
Corpus Luteum
25 Citations

The DBHS proteins SFPQ, NONO and PSPC1: A multipurpose molecular scaffold

Knott, G., Bond, C. & Fox, A. 19 May 2016 In : Nucleic Acids Research. 44, 9, p. 3989-4004

Research output: Contribution to journalArticle

Open Access
Protein Splicing
Drosophila
Nucleic Acids
Proteins
RNA Transport
15 Citations

The ins and outs of lncRNA structure: How, why and what comes next?

Blythe, A., Fox, A. & Bond, C. Jan 2016 In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1859, 1, p. 46-58 13 p.

Research output: Contribution to journalReview article

Open Access
File
Long Noncoding RNA
Molecular biology
Structural analysis
Molecular Biology
RNA
2015

Biochemistry in Western Australia

Newsholme, P., Hartmann, P., Tuckey, R. & Bond, C. 2015 In : Biochemist. 37, 6, p. 32-34

Research output: Contribution to journalArticle

5 Citations

Caenorhabditis elegans NONO-1: Insights into DBHS protein structure, architecture, and function

Knott, G., Lee, M., Passon, D., Fox, A. & Bond, C. Dec 2015 In : Protein Science. 24, 12, p. 2033-2043

Research output: Contribution to journalArticle

Open Access
55 Citations

Convergent evolution of strigolactone perception enabled host detection in parasitic plants

Conn, C. E., Bythell-Douglas, R., Neumann, D., Yoshida, S., Whittington, B., Westwood, J. H., Shirasu, K., Bond, C., Dyer, K. A. & Nelson, D. C. 2015 In : Science. 349, 6247, p. 540-543

Research output: Contribution to journalArticle

Germination
Arabidopsis
Orobanchaceae
Parasites
Angiosperms
4 Citations

Electrostatic complementarity in pseudoreceptor modeling based on drug molecule crystal structures: The case of loxistatin acid (E64c)

Shi, M., Sobolev, A., Schirmeister, T., Engels, B., Schmidt, T. C., Luger, P., Mebs, S., Dittrich, B., Chen, Y., Bąk, J., Jayatilaka, D., Bond, C., Turner, M., Stewart, S., Spackman, M. & Grabowsky, S. 1 Mar 2015 In : New Journal of Chemistry. 39, 3, p. 1628-1633 6 p.

Research output: Contribution to journalArticle

Open Access
File
Electrostatics
Crystal structure
Cysteine Proteinase Inhibitors
Molecules
Acids
23 Citations

Predictable alteration of sequence recognition by RNA editing factors from arabidopsis

Kindgren, P., Yap, A., Bond, C. & Small, I. 3 Feb 2015 In : The Plant Cell. 27, 2, p. 403-416

Research output: Contribution to journalArticle

Open Access
RNA Editing
RNA editing
Arabidopsis
Nucleotides
nucleotides
58 Citations

Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles

Hennig, S., Kong, G., Mannen, T., Sadowska, A., Kobelke, S., Blythe, A., Knott, G. J., Swaminatha Iyer, K., Ho, D., Newcombe, E. A., Hosoki, K., Goshima, N., Kawaguchi, T., Hatters, D., Trinkle-Mulcahy, L., Hirose, T., Bond, C. & Fox, A. 17 Aug 2015 In : The Journal of Cell Biology. 210, 4, p. 529-539

Research output: Contribution to journalArticle

Open Access
Prions
Phase Transition
RNA-Binding Protein FUS
Long Noncoding RNA
RNA Recognition Motif Proteins
6 Citations

The crystal structure of a homodimeric Pseudomonas glyoxalase I enzyme reveals asymmetric metallation commensurate with half-of-sites activity

Bythell-Douglas, R., Suttisansanee, U., Flematti, G., Challenor, M., Lee, M., Panjikar, S. K., Honek, J. F. & Bond, C. 2015 In : Chemistry - A European Journal. 21, 2, p. 541-544

Research output: Contribution to journalArticle

Lactoylglutathione Lyase
Crystal structure
Metals
Enzymes
Ions
14 Citations

The design and structural characterization of a synthetic pentatricopeptide repeat protein

Gully, B., Shah, K., Lee, M., Shearston, K., Smith, N., Sadowska, A., Blythe, A., Bernath-Levin, K., Stanley, W., Small, I. & Bond, C. Feb 2015 In : ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY. 71, 2, p. 196-208

Research output: Contribution to journalArticle

Open Access
File
Proteins
RNA-Binding Proteins
Consensus Sequence
RNA
RNA Editing
27 Citations

The solution structure of the pentatricopeptide repeat protein PPR10 upon binding atpH RNA

Gully, B., Cowieson, N., Stanley, W., Shearston, K., Small, I., Barkan, A. & Bond, C. 18 Feb 2015 In : Nucleic Acids Research. 43, 3, p. 1918-1926

Research output: Contribution to journalArticle

Open Access
RNA
Proteins
Amino Acid Motifs
Synchrotrons
RNA-Binding Proteins
31 Citations

The structure of human SFPQ reveals a coiled-coil mediated polymer essential for functional aggregation in gene regulation

Lee, M., Sadowska, A., Bekere, I., Ho, D., Gully, B., Lu, Y., Swaminatha Iyer, K., Trewhella, J., Fox, A. & Bond, C. 20 Apr 2015 In : Nucleic Acids Research. 43, 7, p. 3826-3840

Research output: Contribution to journalArticle

Open Access
Nucleic Acids
Polymers
Long Noncoding RNA
Tumor Suppressor Proteins
Glutamine
2014

Crystallography To Infinity and Beyond

Bond, C. 2014 In : Australian Science Teachers' Journal. 60, 3, p. 12-14

Research output: Contribution to journalReview article

2 Citations

Crystal 'unengineering': Reducing the crystallisability of sulfolobus solfataricus hjc

Middleton, C. L., Parker, J. L., Knott, G., White, M. F. & Bond, C. 2014 In : Australian Journal of Chemistry. 67, 12, p. 1818-1823

Research output: Contribution to journalArticle

Mutagenesis
Crystals
Crystallization
Proteins
Crystal structure
16 Citations

Operation of the Australian Store.Synchrotron for macromolecular crystallography

Meyer, G. R., Aragão, D., Mudie, N. J., Caradoc-Davies, T. T., Mcgowan, S., Bertling, P. J., Groenewegen, D., Quenette, S. M., Bond, C., Buckle, A. M. & Androulakis, S. G. Oct 2014 In : Acta Crystallographica Section D: Structural Biology. 70, 10, p. 2510-2519 10 p.

Research output: Contribution to journalArticle

Open Access
Crystallography
Synchrotrons
Workflow
Biological Science Disciplines
Neutrons
44 Citations

The cytidine deaminase signature HxE(x)nCxxC of DYW1 binds zinc and is necessary for RNA editing of ndhD-1

Boussardon, C., Avon, A., Kindgren, P., Bond, C., Challenor, M., Lurin, C. & Small, I. 2014 In : New Phytologist. 203, 4, p. 1090-1095

Research output: Contribution to journalArticle

Open Access
Cytidine Deaminase
RNA Editing
RNA editing
Zinc
zinc

Therapeutic crystals

Bond, C. 2014 In : Australian Science Teachers' Journal. 60, 4, p. 14-16

Research output: Contribution to journalReview article

Try it out: Building Crystals

Bond, C., Bond, W. R. & Bond, A. A. 2014 In : Australian Science Teachers' Journal. 60(2), 2, p. 14-15

Research output: Contribution to journalReview article

2013
7 Citations

Invariom refinement of a new monoclinic solvate of thiostrepton at 0.64 Å resolution

Pröpper, K., Holstein, J. J., Hübschle, C. B., Bond, C. & Dittrich, B. 2013 In : Acta Crystallographica Section D: Structural Biology. 69, p. 1530-1539

Research output: Contribution to journalArticle

29 Citations

The Structure of the Karrikin-Insensitive Protein (KAI2) in Arabidopsis thaliana

Bythell-Douglas, R., Waters, M., Scaffidi, A., Flematti, G., Smith, S. & Bond, C. 18 Jan 2013 In : PLoS One. 8, 1, p. 1-8

Research output: Contribution to journalArticle

Open Access
Hydrolases
hydrolases
Arabidopsis
Arabidopsis thaliana
Petunia
2012
212 Citations

A Combinatorial Amino Acid Code for RNA Recognition by Pentatricopeptide Repeat Proteins

Barkan, A., Rojas, M., Fujii, S., Yap, A., Chong, Y. S., Bond, C. & Small, I. 16 Aug 2012 In : PLoS Genetics. 8, 8, p. 1-8

Research output: Contribution to journalArticle

Open Access
RNA
amino acid
Amino Acids
amino acids
protein
6 Citations

Colloidal graphenes as heterogeneous additives to enhance protein crystal yield

Gully, B., Zou, J., Cadby, G., Passon, D., Swaminatha Iyer, K. & Bond, C. 16 Jul 2012 In : NANOSCALE. 17, p. 5321-5324

Research output: Contribution to journalArticle

Graphite
Proteins
Graphene
Crystals
Nucleation
44 Citations

Exploring the molecular mechanism of karrikins and strigolactones

Scaffidi, A., Waters, M., Bond, C., Dixon, K., Smith, S., Ghisalberti, E. & Flematti, G. 2012 In : Bioorganic & medicinal chemistry letters. 22, 11, p. 3743-3746

Research output: Contribution to journalArticle

Plant Growth Regulators
Crowns
Hydrolysis
butenolide
25 Citations

Quantitative Variation in Effector Activity of ToxA Isoforms from Stagonospora nodorum and Pyrenophora tritici-repentis

Tan, K. C., Ferguson-Hunt, M., Rybak, K., Waters, O. D. C., Stanley, W., Bond, C., Stukenbrock, E. H., Friesen, T. L., Faris, J. D., Mcdonald, B. A. & Oliver, R. P. Apr 2012 In : Molecular Plant-Microbe Interactions. 25, 4, p. 515-522

Research output: Contribution to journalArticle

Open Access
Pyrenophora tritici-repentis
Leptosphaeria nodorum
Protein Isoforms
sporulation
wheat
4 Citations

Sodium ion association via bridging water molecules for different charged p-phosphonated calix[4]arene bilayers

Ling, I., Swaminatha Iyer, K., Bond, C., Sobolev, A., Alias, Y. & Raston, C. 12 Nov 2012 In : CrystEngComm. 14, 24, p. 8541–8546

Research output: Contribution to journalArticle

Calixarenes
Carbonates
Sodium
sodium
Association reactions
4 Citations

Solar irradiation of the seed germination stimulant karrikinolide produces two novel head-to-head cage dimers

Scaffidi, A., Waters, M., Skelton, B., Bond, C., Sobolev, A., Bythell-Douglas, R., Mckinley, A., Dixon, K., Ghisalberti, E., Smith, S. & Flematti, G. 28 May 2012 In : Organic & Biomolecular Chemistry. 10, 20, p. 4069-4073

Research output: Contribution to journalArticle

stimulants
germination
Germination
Dimers
Seed
65 Citations

Structure of the heterodimer of human NONO and paraspeckle protein component 1 and analysis of its role in subnuclear body formation

Passon, D., Lee, M., Rackham, O., Stanley, W., Sadowska, A., Filipovska, A., Fox, A. & Bond, C. 27 Mar 2012 In : NATIONAL ACADEMY OF SCIENCES. PROCEEDINGS. 109, 13, p. 4846-4850

Research output: Contribution to journalArticle

Open Access
Drosophila
Protein Splicing
Long Noncoding RNA
Biological Phenomena
Drosophila Proteins
2011
11 Citations
Open Access
File
Crystallography
Crystallization
Computational Biology
Solubility
Carrier Proteins
9 Citations

Crystallization of a paraspeckle protein PSPC1-NONO heterodimer

Passon, D., Lee, M., Fox, A. & Bond, C. 9 Nov 2011 In : ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS. 67, 10, p. 1231-1234

Research output: Contribution to journalArticle

Open Access
Crystallization
Drosophila
Protein Splicing
RNA
crystallization

Evolution of pentatricopeptide repeat gene family in angio-sperms

Fujii, S., Bond, C. S., Shikanai, T. & Small, I. D. Dec 2011 In : Genes and Genetic Systems. 86, 6, p. 411-411 1 p.

Research output: Contribution to journalAbstract/Meeting Abstract

114 Citations
2 Citations

Solvent and hydrogen confinement in molecular capsules-Hirshfeld surface and molecular simulation analysis

Martin, A., Boulos, R., Swaminathan Iyer, K., Sobolev, A., Bond, C., Atwood, J. L., Dalgarno, S. J. & Raston, C. 2011 In : Chemical Communications. 47, p. 9882-9884

Research output: Contribution to journalArticle

Capsules
Hydrogen
Molecules
Surface analysis
Chloroform
6 Citations

The Peroxisomal Targeting Signal 1 in sterol carrier protein 2 is autonomous and essential for receptor recognition

Williams, C. P., Schueller, N., Thompson, C. A., Van Den Berg, M., Van Haren, S. D., Erdmann, R., Bond, C., Distel, B., Schliebs, W., Wilmanns, M. & Stanley, W. 2011 In : BMC Biochemistry. 12, p. 8pp

Research output: Contribution to journalArticle

Open Access
Binding Sites
Proteins
Assays
Two-Hybrid System Techniques
Protein Transport
2010
7 Citations

Revised electrostatics from invariom refinement of the 18-residue peptaibol antibiotic trichotoxin A50E

Dittrich, B., Bond, C., Kalinowski, R., Spackman, M. & Jayatilaka, D. 2010 In : CrystEngComm. 12, p. 2419-2423

Research output: Contribution to journalArticle

2009
253 Citations

ALINE: a WYSIWYG protein-sequence alignment editor for publication-quality alignments

Bond, C. & Schuttelkopf, A. W. May 2009 In : Acta Crystallographica Section D: Structural Biology. 65, 5, p. 510-512

Research output: Contribution to journalArticle

Open Access
File
Sequence Alignment
Publications
Proteins
Computational Biology
Biochemistry
15 Citations

Catalytically-inactive β-amylase BAM4 required for starch breakdown in Arabidopsis leaves is a starch-binding-protein

Li, K., Francisco, P., Zhou, W., Edner, C., Steup, M., Ritte, G., Bond, C. & Smith, S. 2009 In : Archives of Biochemistry and Biophysics. 489, 1/2, p. 92-98

Research output: Contribution to journalArticle

beta-Amylase
Arabidopsis
Starch
Glucans
Carrier Proteins