The compendium of crop Proteins with Annotated Locations (cropPAL) version 2020

  • Cornelia Hooper (Creator)
  • Ian Castleden (Data Manager)
  • Nader Aryamanesh (Precision Medicine Theme, South Australian Health and Medical Research Institute, University of Adelaide) (Data Collector)
  • Kylie Black (Contributor)
  • Sally Grasso (Data Collector)
  • Harvey Millar (Creator)

Dataset

Description

The compendium of crop Proteins with Annotated Locations (cropPAL) is a comprehensive collection of subcellular location annotation for crop proteins. Crops included are banana (musa acuminata), barley (hordeum vulgare), canola (brassica napus), field mustard (brassica rapa), maize (zea mays), potato (solanum tuberosum), rice (oryza sativa), sorghum (sorghum bicolor), soybean (glycine max), tomato (solanum lycopersicum), wheat (triticum aestivum) and wine grape (vitis vinifera). The location annotations are derived from published experimental localization studies and precompiled bioinformatic predictions. A protein-protein interaction list was compiled using homology linking of experimental Arabidopsis protein-protein interactions. A user-friendly search interface is provided on the http://crop-pal.org/ web server that allows filtering for species, location, methods, study parameters as well as allows to blast sequences to find localisations for the closest crop match.
Date made availableJan 2020
PublisherThe University of Western Australia
Temporal coverage1989 - 2019
Date of data productionAug 2020

Keywords

  • crop
  • subcellular location
  • proteomics
  • barley
  • hordeum vulgare
  • banana
  • musa acuminata
  • wheat
  • triticum aestivum
  • corn
  • maize
  • zea mays
  • rice
  • oryza sativa
  • GFP
  • protein location
  • fusion protein
  • fluorescent protein
  • brassica napus
  • canola
  • brassica rapa
  • field mustard
  • potato
  • solanum tuberosum
  • sorghum
  • sorghum bicolor
  • soybean
  • glycine max
  • tomato
  • solanum lycopersicum
  • grape
  • vitis vinifera
  • systems biology
  • molecular breeding
  • subcellulomes
  • organelles
  • compartment
  • plant cell
  • agriculture
  • metabolic modelling

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