The compendium of crop Proteins with Annotated Locations (cropPAL) version 2

  • Cornelia Hooper (Creator)
  • Harvey Millar (Creator)
  • Ian Castleden (Creator)
  • Nader Aryamanesh (Contributor)
  • Richard Jacoby (Data Collector)
  • Sally Grasso (Data Collector)

Dataset

Description

The compendium of crop Proteins with Annotated Locations (cropPAL) is a comprehensive collection of subcellular location annotation for crop proteins. Crops included are banana (musa acuminata), barley (hordeum vulgare), canola (brassica napus), maize (zea mays), potato (solanum tuberosum), rice (oryza sativa), sorghum (sorghum bicolor), soybean (glycine max), tomato (solanum lycopersicum), wheat (triticum aestivum) and wine grape (vitis vinifera). The location annotations are derived from published experimental localization studies and precompiled bioinformatic predictions. A protein-protein interaction list was compiled using homology linking of experimental Arabidopsis protein-protein interactions. A user-friendly search interface is provided on the http://crop-pal.org/ web server that allows filtering for species, location, methods, study parameters as well as allows to blast sequences to find localisations for the closest crop match.
Date made available1 Jun 2017
PublisherThe University of Western Australia
Temporal coverage1989 - 2017
Date of data productionOct 2016 - Oct 2017
Geographical coverageworldwide

Keywords

  • crop
  • subcellular location
  • proteomics
  • barley
  • banana
  • wheat
  • corn
  • maize
  • rice
  • GFP
  • protein location
  • fusion proteins
  • fluorescent protein
  • triticum aestivum
  • musa acuminata
  • hordeum vulgare
  • brassica napus
  • canola
  • zea mays
  • potato
  • solanum tuberosum
  • oryza sativa
  • sorghum
  • sorghum bicolor
  • soybean
  • glycine max
  • tomato
  • solanum lycopersicum
  • grape
  • vitis vinifera
  • 060702 Plant Cell and Molecular Biology
  • 060799 Plant Biology not elsewhere classified
  • 080403 Data Structures
  • 080704 Information Retrieval and Web Search

Cite this

Hooper, C. (Creator), Millar, A. (Creator), Castleden, I. (Creator), Aryamanesh, N. (Contributor), Jacoby, R. (Data Collector), Grasso, S. (Data Collector)(1 Jun 2017). The compendium of crop Proteins with Annotated Locations (cropPAL) version 2. The University of Western Australia. cropPAL2_inferredPPI_20171025(.csv), cropPAL2_localisations_20171025(.csv), cropPAL2_main_predictors_20171025(.csv), cropPAL2_inferredPPI_20171025(.sql), cropPAL2_localisations_20171025(.sql), cropPAL2_main_predictors_20171025(.sql). 10.26182/5b3ded60b7d2e