Description
SUBA (http://suba.live/) is the central resource for Arabidopsis protein subcellular location data. Proteins have specific functions and locations within the plant cell. They generate or are themselves products important for plant growth and response. Protein subcellular location and the proximity relationship of proteins are important clues to function within the metabolic household. Subcellular location can be determined by fluorescent protein tagging or mass spectrometry detection in subcellular purifications and by prediction using protein sequence features. SUBA provides a subcellular data query platform, protein sequence BLAST alignment, a high confidence subcellular locations reference standards and analytic tools.
| Date made available | 31 Aug 2022 |
|---|---|
| Publisher | The University of Western Australia |
| Temporal coverage | 1 Jan 1999 - 30 Jun 2020 |
| Date of data production | 19 Aug 2022 |
Keywords
- Arabidopsis
- data analysis centre
- compartments
- subcellular location,
- proteomics
- fluorescent proteins
- GFP
- protein location,
- protein-protein interaction
- PPI
- organelles
Research output
- 4 Article
-
SUBA4: The interactive data analysis centre for Arabidopsis subcellular protein locations
Hooper, C. M., Castleden, I. R., Tanz, S. K., Aryamanesh, N. & Millar, A. H., 4 Jan 2017, In: Nucleic Acids Research. 45, D1, p. D1064-D1074Research output: Contribution to journal › Article › peer-review
Open Access349 Link opens in a new tab Citations (Scopus) -
SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome
Hooper, C., Tanz, S., Castleden, I., Vacher, M., Small, I. & Millar, H., 1 Dec 2014, In: Bioinformatics. 30, 23, p. 3356-3364Research output: Contribution to journal › Article › peer-review
147 Link opens in a new tab Citations (Scopus) -
SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis
Tanz, S. K., Castleden, I., Hooper, C. M., Vacher, M., Small, I. & Millar, A. H., 1 Jan 2013, In: Nucleic Acids Research. 41, Database issue, p. D1185-91Research output: Contribution to journal › Article › peer-review
Open Access253 Link opens in a new tab Citations (Scopus)
Datasets
-
Subcellular Localisation database for Arabidopsis proteins version 4
Hooper, C. (Creator) & Castleden, I. (Creator), The University of Western Australia, 26 Oct 2016
Dataset
File -
Subcellular Localisation database for Arabidopsis proteins version 3
Tanz, S. (Creator) & Hooper, C. (Creator), The University of Western Australia, 13 Dec 2016
DOI: 10.4225/23/59151525d122a, http://suba.plantenergy.uwa.edu.au
Dataset
File
Cite this
- DataSetCite