Subcellular Localisation database for Arabidopsis proteins version 5

  • Conny Hooper (Creator)
  • Harvey Millar (Funder)
  • Kylie Black (Contributor)
  • Ian Castleden (Creator)
  • Nader Aryamanesh (Contributor)
  • Sally Grasso (Contributor)

Dataset

Description

SUBA (http://suba.live/) is the central resource for Arabidopsis protein subcellular location data. Proteins have specific functions and locations within the plant cell. They generate or are themselves products important for plant growth and response. Protein subcellular location and the proximity relationship of proteins are important clues to function within the metabolic household. Subcellular location can be determined by fluorescent protein tagging or mass spectrometry detection in subcellular purifications and by prediction using protein sequence features. SUBA provides a subcellular data query platform, protein sequence BLAST alignment, a high confidence subcellular locations reference standards and analytic tools.
Date made available31 Aug 2022
PublisherThe University of Western Australia
Temporal coverage1 Jan 1999 - 30 Jun 2020
Date of data production19 Aug 2022

Keywords

  • Arabidopsis
  • data analysis centre
  • compartments
  • subcellular location,
  • proteomics
  • fluorescent proteins
  • GFP
  • protein location,
  • protein-protein interaction
  • PPI
  • organelles

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