Research output per year
Research output per year
Description
The subcellular location database for Arabidopsis proteins SUBA3, http://suba.plantenergy.uwa.edu.au) combines manual literature curation of largescale subcellular proteomics, fluorescent protein visualization and protein–protein interaction (PPI) datasets with subcellular targeting calls from 22 prediction programs. Overall, nearly 650 000 new calls of subcellular location for Arabidopsis proteins (TAIR10) are included. To determine as objectively as possible where a particular protein is located, we have developed SUBAcon, a Bayesian approach that incorporates experimental localization and targeting prediction data to best estimate a protein’s location in the cell.
| Date made available | 13 Dec 2016 |
|---|---|
| Publisher | The University of Western Australia |
| Date of data production | 1 Jun 2012 - 31 Jul 2016 |
| Geospatial point | -31.982462166545037,115.81880986690521Show on map |
Keywords
- subcellular localisation
- proteomics
- GFP
- fusion protein
- protein-protein interaction
- fluorescent protein
- PPI
- Arabidopsis
- organelles
- cellular compartments
- model plant
- protein location
Research output
- 4 Article
-
Using the SUBcellular database for Arabidopsis proteins to localize the Deg protease family
Tanz, S., Castleden, I., Hooper, C., Small, I. & Harvey Millar, H., Aug 2014, In: Frontiers in Plant Science. 5, AUG, p. 1-13Research output: Contribution to journal › Article › peer-review
Open Access16 Citations (Scopus) -
SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis
Tanz, S. K., Castleden, I., Hooper, C. M., Vacher, M., Small, I. & Millar, A. H., 1 Jan 2013, In: Nucleic Acids Research. 41, Database issue, p. D1185-91Research output: Contribution to journal › Article › peer-review
Open Access252 Citations (Scopus) -
SUBA: the Arabidopsis subcellular database
Heazlewood, J. L., Verboom, R., Tonti-Filippini, J., Small, I. & Millar, H., 2007, In: Nucleic Acids Research. 35, Supp. 1, p. D213-D218Research output: Contribution to journal › Article › peer-review
Open Access370 Citations (Scopus)
Projects
- 3 Finished
-
Determining Organellar Gene Expression in Distinct Cell Types: a Missing Piece of the Puzzle for the Transfer of C4 Photosynthesis into C3 Plants
Tanz, S. (Investigator 01)
ARC Australian Research Council
1/01/12 → 31/12/14
Project: Research
-
Regulation and Role of Metabolic Networks for Respiration in Plants
Millar, H. (Investigator 01)
ARC Australian Research Council
1/01/11 → 31/03/16
Project: Research
-
Centre in Plant Energy Biology CPEB
Whelan, J. (Investigator 01), Smith, S. (Investigator 02), Badger, M. (Investigator 03), Small, I. (Investigator 04), Millar, H. (Investigator 05), Tyerman, S. (Investigator 06) & Pogson, B. (Investigator 07)
ARC Australian Research Council
1/01/05 → 31/12/13
Project: Research
Datasets
-
The compendium of crop Proteins with Annotated Locations (cropPAL) version 2020
Hooper, C. (Creator), Castleden, I. (Data Manager), Aryamanesh, N. (Data Collector), Black, K. (Contributor), Grasso, S. (Data Collector) & Millar, H. (Creator), The University of Western Australia, Jan 2020
Dataset
File -
Subcellular Localisation database for Arabidopsis proteins version 5
Hooper, C. (Creator), Millar, H. (Funder), Black, K. (Contributor), Castleden, I. (Creator), Aryamanesh, N. (Contributor) & Grasso, S. (Contributor), The University of Western Australia, 31 Aug 2022
DOI: 10.26182/8dht-4017, https://suba.live/
Dataset
File -
Subcellular Localisation database for Arabidopsis proteins version 4
Hooper, C. (Creator) & Castleden, I. (Creator), The University of Western Australia, 26 Oct 2016
Dataset
File