Subcellular Localisation database for Arabidopsis proteins version 3

Dataset

Description

The subcellular location database for Arabidopsis proteins SUBA3, http://suba.plantenergy.uwa.edu.au) combines manual literature curation of largescale subcellular proteomics, fluorescent protein visualization and protein–protein interaction (PPI) datasets with subcellular targeting calls from 22 prediction programs. Overall, nearly 650 000 new calls of subcellular location for Arabidopsis proteins (TAIR10) are included. To determine as objectively as possible where a particular protein is located, we have developed SUBAcon, a Bayesian approach that incorporates experimental localization and targeting prediction data to best estimate a protein’s location in the cell.
Date made available13 Dec 2016
PublisherThe University of Western Australia
Date of data production1 Jun 2012 - 31 Jul 2016
Geospatial Point-31.982462166545037,115.81880986690521

Keywords

  • subcellular localisation
  • proteomics
  • GFP
  • fusion protein
  • protein-protein interaction
  • fluorescent protein
  • PPI
  • Arabidopsis
  • organelles
  • cellular compartments
  • model plant
  • protein location
  • 060799 Plant Biology not elsewhere classified
  • 060109 Proteomics and Intermolecular Interactions (excl. Medical Proteomics)
  • 060114 Systems Biology
  • 060702 Plant Cell and Molecular Biology
  • 060104 Cell Metabolism

Cite this

Tanz, S. (Creator), Hooper, C. (Creator). (13 Dec 2016): Subcellular Localisation database for Arabidopsis proteins version 3, The University of Western Australia. README(.rtf), 12_12_2016_suba3_src_gfp(.csv), 12_12_2016_suba3_src_msms(.csv), 12_12_2016_suba3_src_ppi(.csv), 12_12_2016_suba3_suba3(.csv), 12_12_2016_suba3(.sql). 10.4225/23/59151525d122a