Description
SUBA (http://suba.live/) is the central resource for Arabidopsis protein subcellular location data. Proteins have specific functions and locations within the plant cell. They generate or are themselves products important for plant growth and response. Protein subcellular location and the proximity relationship of proteins are important clues to function within the metabolic household. Subcellular location can be determined by fluorescent protein tagging or mass spectrometry detection in subcellular purifications and by prediction using protein sequence features. SUBA provides a subcellular data query platform, protein sequence BLAST alignment, a high confidence subcellular locations reference standards and analytic tools.
| Date made available | 26 Oct 2016 |
|---|---|
| Publisher | The University of Western Australia |
| Date of data production | 1 Jun 2016 - 31 Oct 2016 |
| Geographical coverage | ARC Centre of Excellence in Plant Energy Biology |
Keywords
- Arabidopsis
- subcellular location
- proteomics
- fluorescent proteins
- GFP
- protein location
- protein-protein interaction
- PPI
- organelles
- compartments
- 060114 Systems Biology
- 060702 Plant Cell and Molecular Biology
- 060104 Cell Metabolism
- 060109 Proteomics and Intermolecular Interactions (excl. Medical Proteomics)
- 060799 Plant Biology not elsewhere classified
Cite this
Hooper, C. (Creator), Castleden, I. (Creator). (26 Oct 2016): Subcellular Localisation database for Arabidopsis proteins version 4, The University of Western Australia. Location_catgories(.csv), 24_10_2016_tool_ppi(.csv), Proximity_relationship_key(.csv), 24_10_2016_gfp(.csv), SUBA4_summary(.csv), 24_10_2016_msms(.csv), 24_10_2016_ppi(.csv). 10.4225/23/581055ddcb1ce