Research output per year
Research output per year
Description
GSM1979147: AtTric1&2 dko seedlings
3 replicates
Seeds were sown on MS media, statified at 4 C for 2-d before being transferred to growth chambers at 22C, following a 16 h photoperiod. Tissue was collected at 2 weeks.
seedling_col0vdko_tair.txt
Sequenced reads were trimmed for adaptor sequence, and filtered for low-quality sequence, then mapped to the tair10 whole genome using bowtie v2.2.0-beta7 and tophat v2.2.0 with the parameters:–b2-sensitive –r 0 –mate-std-dev 100 –g 1 –G .
Transcript abundance was estimated by FPKM (fragment per Kilobase of exon per million fragments mapped) using Cufflinks pipeline (version 2.2.0) and RNAseq data was analysed using Cuffdiff 2.2.0 under default parameters.
Genome_build: tair10
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each sample, as part of Cuffdiff output.
3 replicates
Seeds were sown on MS media, statified at 4 C for 2-d before being transferred to growth chambers at 22C, following a 16 h photoperiod. Tissue was collected at 2 weeks.
seedling_col0vdko_tair.txt
Sequenced reads were trimmed for adaptor sequence, and filtered for low-quality sequence, then mapped to the tair10 whole genome using bowtie v2.2.0-beta7 and tophat v2.2.0 with the parameters:–b2-sensitive –r 0 –mate-std-dev 100 –g 1 –G .
Transcript abundance was estimated by FPKM (fragment per Kilobase of exon per million fragments mapped) using Cufflinks pipeline (version 2.2.0) and RNAseq data was analysed using Cuffdiff 2.2.0 under default parameters.
Genome_build: tair10
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each sample, as part of Cuffdiff output.
| Date made available | 23 Dec 2015 |
|---|---|
| Publisher | Gene Expression Omnibus (NCBI) |
Research output
- 1 Article
-
Plant specific Preprotein and Amino Acid Transporter proteins are required for tRNA import into mitochondria
Murcha, M. W., Kubiszewski-Jakubiak, S., Teixeira, P. F., Gügel, I. L., Kmiec, B., Narsai, R., Ivanova, A., Megel, C., Schock, A., Kraus, S., Berkowitz, O., Glaser, E., Philippar, K., Maréchal-Drouard, L., Soll, J. & Whelan, J., Dec 2016, In: Plant Physiology. 172, 4, p. 2471-2490 20 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile20 Citations (Web of Science)429 Downloads (Pure)
Datasets
-
GSM1979148: WT(Col0) seedlings
Narsai, R. (Creator), Gene Expression Omnibus (NCBI), 23 Dec 2015
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1979148
Dataset
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GSM1979146: AtTric1&2 dko rosette leaves
Narsai, R. (Creator), Gene Expression Omnibus (NCBI), 23 Dec 2015
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1979146
Dataset
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GSE76287: Expression data for WT(Col0) and double mutants for AtTric1 (At3g49560) and AtTric2 (At5g24650) in Arabidopsis
Narsai, R. (Creator), Gene Expression Omnibus (NCBI), 22 Dec 2016
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76287
Dataset