3D genomics across the tree of life reveals condensin II as a determinant of architecture type

  • Claire Hoencamp (Creator)
  • Olga Dudchenko (Baylor College of Medicine) (Creator)
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  • Nils Stein (Leibniz Institute of Plant Genetics and Crop Plant Research) (Creator)
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  • Erez Lieberman Aiden (Baylor College of Medicine) (Creator)
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Dataset

Description

GAMinG script (python) and sequence file (.dat) to prepare files to run molecular dynamics in GROMACS (see ndb.rice.edu for more info regarding how to run the simulations). Two .hic maps and two sample trajectory files for high and low lengthwise compaction (binary format, see ndb.rice.edu for the conversion of .cndb to other formats) corresponding to fig 4 in the main text. There are also two aggregate chromosome analysis (ACA) hic maps corresponding to lower (CAPH2) and higher (WT) compaction.
Date made available4 Mar 2021
PublisherZenodo

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