Researcher Profile

Professor Timo Lassmann

Timo Lassmann
Timo Lassmann
  1. 2018
  2. A phenotype centric benchmark of variant prioritisation tools

    Anderson, D. & Lassmann, T. 1 Dec 2018 In : npj Genomic Medicine. 3, 1, 5

    Research output: Contribution to journalArticle

  3. Discovery of Transcription Factors Novel to Mouse Cerebellar Granule Cell Development Through Laser-Capture Microdissection

    Zhang, P. G. Y., Yeung, J., Gupta, I., Ramirez, M., Ha, T., Swanson, D. J., Nagao-Sato, S., Itoh, M., Kawaji, H., Lassmann, T., Daub, C. O., Arner, E., de Hoon, M., the FANTOM consortium, Carninci, P., Forrest, A. R. R., Hayashizaki, Y. & Goldowitz, D. 6 Jan 2018 In : Cerebellum. p. 1-18 18 p.

    Research output: Contribution to journalArticle

  4. 2017
  5. Data Descriptor: Monitoring transcription initiation activities in rat and dog

    Lizio, M., Mukarram, A. K., Ohno, M., Watanabe, S., Itoh, M., Hasegawa, A., Lassmann, T., Severin, J., Harshbarger, J., Abugessaisa, I., Kasukawa, T., Hon, C. C., Carninci, P., Hayashizaki, Y., Forrest, A. R. R. & Kawaji, H. 28 Nov 2017 In : Scientific Data. 4, 170173

    Research output: Contribution to journalArticle

  6. Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

    Francescatto, M., Lizio, M., Philippens, I., Bontrop, R., Sakai, M., Watanabe, S., Itoh, M., Hasegawa, A., Lassmann, T., Severin, J., Harshbarger, J., Abugessaisa, I., Kasukawa, T., Carninci, P., Hayashizaki, Y., Forrest, A. R. R., Kawaji, H., Rizzu, P. & Heutink, P. 31 Oct 2017 In : Scientific Data. 4, 170163

    Research output: Contribution to journalArticle

  7. Linking FANTOM5 CAGE peaks to annotations with CAGEscan

    Bertin, N., Mendez, M., Hasegawa, A., Lizio, M., Abugessaisa, I., Severin, J., Sakai-Ohno, M., Lassmann, T., Kasukawa, T., Kawaji, H., Hayashizaki, Y., Forrest, A. R. R., Carninci, P. & Plessy, C. 3 Oct 2017 In : Scientific Data. 4, 8 p., 170147

    Research output: Contribution to journalArticle

  8. Integrative CAGE and DNA methylation profiling identify epigenetically regulated genes in NSCLC

    Horie, M., Kaczkowski, B., Ohshima, M., Matsuzaki, H., Noguchi, S., Mikami, Y., Lizio, M., Itoh, M., Kawaji, H., Lassmann, T., Carninci, P., Hayashizaki, Y., Forrest, A. R. R., Takai, D., Yamaguchi, Y., Micke, P., Saito, A. & Nagase, T. 1 Oct 2017 In : Molecular Cancer Research. 15, 10, p. 1354-1365 12 p.

    Research output: Contribution to journalArticle

  9. Transcriptome Analysis Uncovers a Growth-Promoting Activity of Orosomucoid-1 on Hepatocytes

    Qin, X. Y. , Hara, M. , Arner, E. , Kawaguchi, Y. , Inoue, I. , Tatsukawa, H. , Furutani, Y. , Nagatsuma, K. , Matsuura, T. , Wei, F. , Kikuchi, J. , Sone, H. , Daub, C. , Kawaji, H. , Lassmann, T. , Itoh, M. , Suzuki, H. , Carninci, P. , Hayashizaki, Y. , Kokudo, N. & 3 others Forrest, A. R. R., Kojima, S. & the FANTOM consortium 1 Oct 2017 In : EBioMedicine. 24, p. 257-266 10 p.

    Research output: Contribution to journalArticle

  10. An integrated expression atlas of miRNAs and their promoters in human and mouse

    de Rie, D. , Abugessaisa, I. , Alam, T. , Arner, E. , Arner, P. , Ashoor, H. , Astrom, G. , Babina, M. , Bertin, N. , Burroughs, A. M. , Carlisle, A. J. , Daub, C. O. , Detmar, M. , Deviatiiarov, R. , Fort, A. , Gebhard, C. , Goldowitz, D. , Guhl, S. , Ha, T. J. , Harshbarger, J. & 50 others Hasegawa, A., Hashimoto, K., Herlyn, M., Heutink, P., Hitchens, K. J., Hon, C. C., Huang, E., Ishizu, Y., Kai, C., Kasukawa, T., Klinken, P., Lassmann, T., Lecellier, C-H., Lee, W., Lizio, M., Makeev, V., Mathelier, A., Medvedeva, Y. A., Mejhert, N., Mungall, C. J., Noma, S., Ohshima, M., Okada-Hatakeyama, M., Persson, H., Rizzu, P., Roudnicky, F., Saetrom, P., Sato, H., Severin, J., Shin, J. W., Swoboda, R. K., Tarui, H., Toyoda, H., Vitting-Seerup, K., Winteringham, L., Yamaguchi, Y., Yasuzawa, K., Yoneda, M., Yumoto, N., Zabierowski, S., Zhang, P. G., Wells, C. A., Summers, K. M., Kawaji, H., Sandelin, A., Rehli, M., Hayashizaki, Y., Carninci, P., Forrest, A. R. R. & de Hoon, M. J. L. Sep 2017 In : Nature Biotechnology. 35, 9, p. 872–878

    Research output: Contribution to journalArticle

  11. Systematic analysis of transcription start sites in avian development

    Lizio, M., Deviatiiarov, R., Nagai, H., Galan, L., Arner, E., Itoh, M., Lassmann, T., Kasukawa, T., Hasegawa, A., Ros, M. A., Hayashizaki, Y., Carninci, P., Forrest, A. R. R., Kawaji, H., Gusev, O. & Sheng, G. Sep 2017 In : PLoS Biology. 15, 9, 23 p., 2002887

    Research output: Contribution to journalArticle

  12. FANTOM5 CAGE profiles of human and mouse samples

    Noguchi, S. , Arakawa, T. , Fukuda, S. , Furuno, M. , Hasegawa, A. , Hori, F. , Ishikawa-Kato, S. , Kaida, K. , Kaiho, A. , Kanamori-Katayama, M. , Kawashima, T. , Kojima, M. , Kubosaki, A. , Manabe, R. I. , Murata, M. , Nagao-Sato, S. , Nakazato, K. , Ninomiya, N. , Nishiyori-Sueki, H. , Noma, S. & 158 others Saijyo, E., Saka, A., Sakai, M., Simon, C., Suzuki, N., Tagami, M., Watanabe, S., Yoshida, S., Arner, P., Axton, R. A., Babina, M., Kenneth Baillie, J., Barnett, T. C., Beckhouse, A. G., Blumenthal, A., Bodega, B., Bonetti, A., Briggs, J., Brombacher, F., Carlisle, A. J., Clevers, H. C., Davis, C. A., Detmar, M., Dohi, T., Edge, B. A. S., Edinger, M., Ehrlund, A., Ekwall, K., Endoh, M., Enomoto, H., Eslami, A., Fagiolini, M., Fairbairn, L., Farach-Carson, M. C., Faulkner, G. J., Ferrai, C., Fisher, M. E., Forrester, L. M., Fujita, R., Furusawa, J. I., Geijtenbeek, T. B., Gingeras, T., Goldowitz, D., Guhl, S., Guler, R., Gustincich, S., Ha, T. J., Hamaguchi, M., Hara, M., Hasegawa, Y., Herlyn, M., Heutink, P., Hitchens, K. J., Hume, D. A., Ikawa, T., Ishizu, Y., Kai, C., Kawamoto, H., Kawamura, Y. I., Kempfle, J. S., Kenna, T. J., Kere, J., Khachigian, L. M., Kitamura, T., Klein, S., Peter Klinken, S., Knox, A. J., Kojima, S., Koseki, H., Koyasu, S., Lee, W., Lennartsson, A., MacKay-Sim, A., Mejhert, N., Mizuno, Y., Morikawa, H., Morimoto, M., Moro, K., Morris, K. J., Motohashi, H., Mummery, C. L., Nakachi, Y., Nakahara, F., Nakamura, T., Nakamura, Y., Nozaki, T., Ogishima, S., Ohkura, N., Ohno, H., Ohshima, M., Okada-Hatakeyama, M., Okazaki, Y., Orlando, V., Ovchinnikov, D. A., Passier, R., Patrikakis, M., Pombo, A., Pradhan-Bhatt, S., Qin, X. Y., Rehli, M., Rizzu, P., Roy, S., Sajantila, A., Sakaguchi, S., Sato, H., Satoh, H., Savvi, S., Saxena, A., Schmidl, C., Schneider, C., Schulze-Tanzil, G. G., Schwegmann, A., Sheng, G., Shin, J. W., Sugiyama, D., Sugiyama, T., Summers, K. M., Takahashi, N., Takai, J., Tanaka, H., Tatsukawa, H., Tomoiu, A., Toyoda, H., Wetering, M., Berg, L. M. V. D., Verardo, R., Vijayan, D. I., Wells, C. A., Winteringham, L. N., Wolvetang, E., Yamaguchi, Y., Yamamoto, M., Yanagi-Mizuochi, C., Yoneda, M., Yonekura, Y., Zhang, P. G., Zucchelli, S., Abugessaisa, I., Arner, E., Harshbarger, J., Kondo, A., Lassmann, T., Lizio, M., Sahin, S., Sengstag, T., Severin, J., Shimoji, H., Suzuki, M., Suzuki, H., Kawai, J., Kondo, N., Itoh, M., Daub, C. O., Kasukawa, T., Kawaji, H., Carninci, P., Forrest, A. R. R. & Hayashizaki, Y. 29 Aug 2017 In : Scientific Data. 4, 170112

    Research output: Contribution to journalArticle

  13. An atlas of human long non-coding RNAs with accurate 5′ ends

    Hon, C. C. , Ramilowski, J. A. , Harshbarger, J. , Bertin, N. , Rackham, O. J. L. , Gough, J. , Denisenko, E. , Schmeier, S. , Poulsen, T. M. , Severin, J. , Lizio, M. , Kawaji, H. , Kasukawa, T. , Itoh, M. , Burroughs, A. M. , Noma, S. , Djebali, S. , Alam, T. , Medvedeva, Y. A. , Testa, A. C. & 19 others Lipovich, L., Yip, C. W., Abugessaisa, I., Mendez, M., Hasegawa, A., Tang, D., Lassmann, T., Heutink, P., Babina, M., Wells, C. A., Kojima, S., Nakamura, Y., Suzuki, H., Daub, C. O., De Hoon, M. J. L., Arner, E., Hayashizaki, Y., Carninci, P. & Forrest, A. R. R. 9 Mar 2017 In : Nature. 543, 7644, p. 199-204 6 p.

    Research output: Contribution to journalArticle

  14. Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease

    Baillie, J. K., Arner, E., Daub, C. O., De Hoon, M. J. L., Itoh, M., Kawaji, H., Lassmann, T., Carninci, P., Forrest, A. R. R., Hayashizaki, Y., Consortium, F., Faulkner, G. J., Wells, C. A., Rehli, M., Pavli, P., Summers, K. M. & Hume, D. A. 6 Mar 2017 In : PLoS Genetics. 13, 3, 36 p., 1006641

    Research output: Contribution to journalArticle

  15. Systematic chemical and molecular profiling of MLL-rearranged infant acute lymphoblastic leukemia reveals efficacy of romidepsin

    Cruickshank, M. N., Ford, J., Cheung, L. C., Heng, J., Singh, S., Wells, J., Failes, T. W., Arndt, G. M., Smithers, N., Prinjha, R. K., Anderson, D., Carter, K. W., Gout, A. M., Lassmann, T., O'Reilly, J., Cole, C. H., Kotecha, R. S. & Kees, U. R. 1 Jan 2017 In : Leukemia. 31, 1, p. 40-50 11 p.

    Research output: Contribution to journalArticle

  16. Transcriptional Dynamics During Human Adipogenesis and Its Link to Adipose Morphology and Distribution

    Ehrlund, A., Mejhert, N., Bjork, C., Andersson, R., Kulyte, A., Astrom, G., Itoh, M., Kawaji, H., Lassmann, T., Daub, C. O., Carninci, P., Forrest, A. R. R., Hayashizaki, Y., Sandelin, A., Ingelsson, E., FANTOM Consortium, Ryden, M., Laurencikiene, J., Arner, P. & Arner, E. Jan 2017 In : Diabetes. 66, 1, p. 218-230 13 p.

    Research output: Contribution to journalArticle

  17. 2016
  18. YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses

    Chen, C. Y., Shi, W., Balaton, B. P., Matthews, A. M., Li, Y., Arenillas, D. J., Mathelier, A., Itoh, M., Kawaji, H., Lassmann, T., Hayashizaki, Y., Carninci, P., Forrest, A. R. R., Brown, C. J. & Wasserman, W. W. 18 Nov 2016 In : Scientific Reports. 6, 37324

    Research output: Contribution to journalArticle

  19. Recurrent transcriptome alterations across multiple cancer types

    Kaczkowski, B., Tanaka, Y., Kawaji, H., Sandelin, A., Andersson, R., Itot, M., Lassmann, T., Hayashizaki, Y., Carninci, P., Forrest, A. R. R. & FANTOM5 Consortium Jul 2016 In : Cancer Research. 76, 3 p.

    Research output: Contribution to journalAbstract/Meeting Abstract

  20. CAGEd-oPOSSUM: Motif enrichment analysis from CAGE-derived TSSs

    Arenillas, D. J., Forrest, A., Kawaji, H., Lassmann, T., Wasserman, W. W. & Mathelier, A. 2016 In : Bioinformatics. 32, 18, p. 2858-2860

    Research output: Contribution to journalArticle

  21. DeepCAGE transcriptomics identify HOXD10 as a transcription factor regulating lymphatic endothelial responses to VEGF-C

    Klein, S., Dieterich, L. C., Mathelier, A., Chong, C., Sliwa-Primorac, A., Hong, Y. K., Shin, J. W., Lizio, M., Itoh, M., Kawaji, H., Lassmann, T., Daub, C. O., Arner, E., Carninci, P., Hayashizaki, Y., Forrest, A., Wasserman, W. W. & Detmar, M. 2016 In : Journal of Cell Science. 129, 13, p. 2573-2585

    Research output: Contribution to journalArticle

  22. Functional annotation of the vlinc class of non-coding RNAs using systems biology approach

    Laurent, G. S., Vyatkin, Y., Antonets, D., Ri, M., Qi, Y., Saik, O., Shtokalo, D., De Hoon, M. J. L., Kawaji, H., Itoh, M., Lassmann, T., Arner, E., Forrest, A. R. R., Nicolas, E., Mccaffrey, T. A., Carninci, P., Hayashizaki, Y., Wahlestedt, C. & Kapranov, P. 2016 In : Nucleic Acids Research. 44, 7, p. 3233-3252

    Research output: Contribution to journalArticle

  23. 1

    On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase

    lenasescu, H., Li, K., Andersson, R., Vitezic, M., Rennie, S., Chen, Y., Vitting-Seerup, K., Lagoni, E., Boyd, M., Bornholdt, J., Kawaji, H., Lassmann, T., The FANTOM Consortium, Forrest, A. & Carninci, P. 2016 In : Database-The Journal of Biological Databases and Curation. p. 1-10 10 p., baw144

    Research output: Contribution to journalArticle

  24. The rare and undiagnosed diseases diagnostic service - application of massively parallel sequencing in a state-wide clinical service

    Baynam, G. , Pachter, N. , McKenzie, F. , Townshend, S. , Slee, J. , Kiraly-Borri, C. , Vasudevan, A. , Hawkins, A. , Broley, S. , Schofield, L. , Verhoef, H. , Walker, C. E. E. , Molster, C. , Blackwell, J. M. , Jamieson, S. , Tang, D. , Lassmann, T. , Mina, K. , Beilby, J. , Davis, M. & 5 others Laing, N., Murphy, L., Weeramanthri, T., Dawkins, H. & Goldblatt, J. 2016 In : Orphanet Journal of Rare Diseases. 11, 7 p., 77

    Research output: Contribution to journalArticle

  25. Transcriptome analysis of recurrently deregulated genes across multiple cancers identifies new pan-cancer biomarkers

    Kaczkowski, B., Tanaka, Y., Kawaji, H., Sandelin, A., Andersson, R., Itoh, M., Lassmann, T., Hayashizaki, Y., Carninci, P. & Forrest, A. 2016 In : Cancer Research. 76, 2, p. 216-226

    Research output: Contribution to journalArticle

  26. 2015
  27. Application of gene expression trajectories initiated from ErbB receptor activation highlights the dynamics of divergent promoter usage

    Carbajo, D., Magi, S., Itoh, M., Kawaji, H., Lassmann, T., Arner, E., Forrest, A., Carninci, P., Hayashizaki, Y., Daub, C. O., Okada-Hatakeyama, M. & Mar, J. C. 2015 In : PLoS One. 10, 12, p. 1-22

    Research output: Contribution to journalArticle

  28. DeepCAGE Transcriptomics Reveal an Important Role of the Transcription Factor MAFB in the Lymphatic Endothelium

    Dieterich, L. C., Klein, S., Mathelier, A., Sliwa-Primorac, A., Ma, Q., Hong, Y. K., Shin, J. W., Hamada, M., Lizio, M., Itoh, M., Kawaji, H., Lassmann, T., Daub, C. O., Arner, E., Carninci, P., Hayashizaki, Y., Forrest, A. R. R., Wasserman, W. W. & Detmar, M. 2015 In : Cell Reports. 13, 7, p. 1493-1504

    Research output: Contribution to journalArticle

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ID: 3425274

Most frequent journals
  • Scientific Data

    ISSNs: 2052-4463

    Nature Publishing Group, United Kingdom

    Scopus rating (2017): SJR 3.026 SNIP 2.291

    Indexed in DOAJ

    Journal: ERA2018

  • Nature Genetics

    ISSNs: 1061-4036, 1546-1718

    Nature Publishing Group

    Scopus rating (2017): SJR 22.243 SNIP 5.867

    Journal: ERA2018

  • Scientific Reports

    ISSNs: 2045-2322

    Nature Publishing Group - Macmillan Publishers

    Scopus rating (2017): SJR 1.533 SNIP 1.245

    Indexed in DOAJ

    Journal: ERA2018

  • Cancer Research

    ISSNs: 0008-5472, 0099-7013, 1538-7445

    American Association for Cancer Research (AACR)

    Scopus rating (2017): SJR 4.26 SNIP 1.692

    Journal: ERA2018

  • Genome Biology

    ISSNs: 1474-7596, 1474-760X, 1465-6906

    BioMed Central

    Scopus rating (2017): SJR 12.74 SNIP 3.126

    Indexed in DOAJ

    Journal: ERA2018

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